BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0020.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_421391.1| ABC-type branched-chain amino acid transport sy... 234 1e-59 ref|ZP_00053197.1| COG4177: ABC-type branched-chain amino acid t... 233 3e-59 ref|YP_003450607.1| branched-chain amino acid transport system p... 223 4e-56 ref|ZP_00053654.1| COG4177: ABC-type branched-chain amino acid t... 211 1e-52 ref|YP_421822.1| ABC-type branched-chain amino acid transport sy... 204 1e-50 >ref|YP_421391.1| ABC-type branched-chain amino acid transport system [Magnetospirillum magneticum AMB-1] dbj|BAE50832.1| ABC-type branched-chain amino acid transport system [Magnetospirillum magneticum AMB-1] Length = 329 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 195/291 (67%), Gaps = 10/291 (3%) Query: 6 YVISLMTIVLLFTFLGQSWNLMLGIGGQLSIGHALFVGLGAYSVGVLYVKYGISPWVGLL 65 YV+S++ VLL +LG SWN+M+G GQ S+GHAL+VGLGAY+ G L+V YG PW+G L Sbjct: 30 YVLSILITVLLQAYLGMSWNVMMGFAGQFSLGHALYVGLGAYAGGALFVHYGTPPWIGAL 89 Query: 66 TGMILAGSVGASIAWLSFRFEVRGIYFALLTIAAAEFARIMFSGWEFVGAMQGLFF-PAP 124 GM ++ +VGA + L FRF+V G+YFALLTIA AEF R++F W +VGA GLF PAP Sbjct: 90 AGMAVSAAVGAVVGTLGFRFKVMGVYFALLTIAFAEFTRVLFDHWGWVGASSGLFLPPAP 149 Query: 125 TGGIE-ISMLRGDARFYYFVALALAALGIIGTEFISRSYL----GYVWRAMRDDESAARA 179 + + +LRG +Y+VALA+AA G + SR+ L G+ W+A+R+D+ AA A Sbjct: 150 NNSPDNLWLLRGSTTMFYYVALAMAA----GAFWFSRALLMRRIGFYWQAIREDQDAADA 205 Query: 180 LGVRTFQHKILVISISAATAAAGGGVLALVQGSIFPDSIMGMGLSVDVLIGPVVGGLGTT 239 LG+ F++K++ + ISA+ + GG LA +++P+SI M S+++++G ++GG+GT Sbjct: 206 LGIDVFKNKMIAVLISASMTSLGGVFLAFFNNNLYPESIFSMHRSIELMLGTIIGGIGTL 265 Query: 240 FGPLVGSLAAIPLNHLMSALGDSLRIPGLNNITYGVVMISVVWFLPDGIWP 290 FGP++G++ L ++ LG + I G+ I YG+ ++ ++ P G+WP Sbjct: 266 FGPILGAVVLTALGEGLTILGAHIGIDGVKQIAYGICLMLILVLKPGGLWP 316 >ref|ZP_00053197.1| COG4177: ABC-type branched-chain amino acid transport system, permease component [Magnetospirillum magnetotacticum MS-1] Length = 329 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/288 (42%), Positives = 184/288 (63%), Gaps = 2/288 (0%) Query: 5 PYVISLMTIVLLFTFLGQSWNLMLGIGGQLSIGHALFVGLGAYSVGVLYVKYGISPWVGL 64 YV+S++ VLL +LG SWN+M+G GQ S+GHAL+VGLGAY+ G L+V YG PW+G Sbjct: 29 DYVLSILITVLLQAYLGMSWNVMMGFAGQFSLGHALYVGLGAYAGGALFVHYGTPPWIGA 88 Query: 65 LTGMILAGSVGASIAWLSFRFEVRGIYFALLTIAAAEFARIMFSGWEFVGAMQGLFFPAP 124 GM ++ +VGA I L FRF+V G+YFALLTIA AEF R++F W +VGA GLF P Sbjct: 89 FAGMAVSAAVGAVIGTLGFRFKVMGVYFALLTIAFAEFTRVLFDHWGWVGASSGLFLPPA 148 Query: 125 TGGIEIS--MLRGDARFYYFVALALAALGIIGTEFISRSYLGYVWRAMRDDESAARALGV 182 + +LRG +Y+V L + A + +GY W+A+R+D+ AA ALG+ Sbjct: 149 PNNSPNNLWLLRGSTTMFYYVILGMTAAAFWFCRTLLMRRIGYYWQAIREDQDAADALGI 208 Query: 183 RTFQHKILVISISAATAAAGGGVLALVQGSIFPDSIMGMGLSVDVLIGPVVGGLGTTFGP 242 F++K++ + ISAA + GG LA +++P+SI M S+++++G ++GG+GT FGP Sbjct: 209 DVFKNKMIAVLISAAMTSLGGMFLAFFNNNLYPESIFSMHRSIELMLGTIIGGIGTLFGP 268 Query: 243 LVGSLAAIPLNHLMSALGDSLRIPGLNNITYGVVMISVVWFLPDGIWP 290 ++G++ L ++ LG + I G+ I YG+ ++ ++ P G+WP Sbjct: 269 ILGAVVLTALGEGLTILGAHIGIDGVKQIAYGICLMLILVLKPGGLWP 316 >ref|YP_003450607.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] dbj|BAI74063.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] Length = 339 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 192/303 (63%), Gaps = 2/303 (0%) Query: 2 LANPYVISLMTIVLLFTFLGQSWNLMLGIGGQLSIGHALFVGLGAYSVGVLYVKYGISPW 61 +A+ Y++S++T VL F ++GQ+WN+M+G G LS+GHAL+VGLGAY L+V +GI PW Sbjct: 33 VADRYLLSVLTTVLWFAYVGQAWNVMMGFSGLLSLGHALYVGLGAYVSAALFVHFGIGPW 92 Query: 62 VGLLTGMILAGSVGASIAWLSFRFEVRGIYFALLTIAAAEFARIMFSGWEFVGAMQGLFF 121 G+L M++A + G I +L FRF V+G++FALLTIA AE ARI F +VG G F Sbjct: 93 AGMLLAMLVAVAAGCVIGFLGFRFGVKGVHFALLTIAFAEVARIGFDHITWVGGSGGFFL 152 Query: 122 PAPTGGIEISMLRGDARFYYFVALALAALGIIGTEFISRSYLGYVWRAMRDDESAARALG 181 P G + LRG +Y+VALAL ++ + + S LGY W A+R++ AA A G Sbjct: 153 PVEAGASDPLNLRGSPVLFYYVALALVVGALLLSRALLHSRLGYQWLAVREEPDAAEASG 212 Query: 182 VRTFQHKILVISISAATAAAGGGVLALVQGSIFPDSIMGMGLSVDVLIGPVVGGLGTTFG 241 V F+ ++ +++S+A A GG A ++FP+ + MG S+++++ +VGG+GT G Sbjct: 213 VDLFRARMAAVAVSSALTALGGVFQAFYFNNLFPEQVFSMGRSIEIILPAIVGGIGTLVG 272 Query: 242 PLVGSLAAIPLNHLMSALGDS--LRIPGLNNITYGVVMISVVWFLPDGIWPAIVRLCKAI 299 P++G+ PL ++ L ++ L +PGL + YG ++++V F P+G+WP + R + + Sbjct: 273 PILGAFILTPLGEALTFLIEAGGLDLPGLKQLFYGAALVAIVVFRPEGVWPWLARRLRLV 332 Query: 300 QAP 302 + P Sbjct: 333 RQP 335 >ref|ZP_00053654.1| COG4177: ABC-type branched-chain amino acid transport system, permease component [Magnetospirillum magnetotacticum MS-1] Length = 330 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 177/289 (61%), Gaps = 3/289 (1%) Query: 5 PYVISLMTIVLLFTFLGQSWNLMLGIGGQLSIGHALFVGLGAYSVGVLYVKYGISPWVGL 64 PY++S++ +V+ F ++GQ+WN+M+G GQLS+GH L+VGLGAY+ L+V G+ +GL Sbjct: 24 PYLLSVLVVVMYFAYVGQTWNIMMGFAGQLSLGHTLYVGLGAYTAAALFVHLGVPAALGL 83 Query: 65 LTGMILAGSVGASIAWLSFRFEVRGIYFALLTIAAAEFARIMFSG-WEFVGAMQGLFFPA 123 + A G + L FRF V+G+YFALLTIA AEF RI+F G Sbjct: 84 FAAVGAAVLTGGIVGALGFRFGVKGVYFALLTIAFAEFTRILFEHIPGLGGPGGLFLPVG 143 Query: 124 PTGGIEISMLRGDARFYYFVALALAALGIIGTEFISRSYLGYVWRAMRDDESAARALGVR 183 GI++ LRG +Y++ LA+ + ++ RS LGY W A+R+D+ AA ALG+ Sbjct: 144 DRNGIDLIHLRGHPLMFYYLILAMTVGIFLLCRWLLRSRLGYTWLAVREDQEAAAALGIN 203 Query: 184 TFQHKILVISISAATAAAGGGVLALVQGSIFPDSIMGMGLSVDVLIGPVVGGLGTTFGPL 243 F+ K+ + +SA A GG A ++FP+ GM S+++++ P+VGGLGT FGP+ Sbjct: 204 VFRAKLYAVMLSAGLTALGGVFFAFYYNNLFPNQAFGMNRSIEIILAPIVGGLGTLFGPI 263 Query: 244 VGSLAAIPLNHLMSALGDSL--RIPGLNNITYGVVMISVVWFLPDGIWP 290 +G+L PL ++ +++ + G+ + YG+ ++++V FLPDG+WP Sbjct: 264 LGALILTPLGEGITLATEAMGFKAAGIKQLCYGLSLLAIVKFLPDGVWP 312 >ref|YP_421822.1| ABC-type branched-chain amino acid transport system, permease component [Magnetospirillum magneticum AMB-1] dbj|BAE51263.1| ABC-type branched-chain amino acid transport system, permease component [Magnetospirillum magneticum AMB-1] Length = 330 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 179/289 (61%), Gaps = 3/289 (1%) Query: 5 PYVISLMTIVLLFTFLGQSWNLMLGIGGQLSIGHALFVGLGAYSVGVLYVKYGISPWVGL 64 PY++S++ +V+ F ++GQ+WN+M+G GQLS+GH L+VGLGAY+ G L+V G+ +GL Sbjct: 24 PYLLSVLVVVMYFAYVGQAWNIMMGFAGQLSLGHTLYVGLGAYTAGALFVHLGVPAALGL 83 Query: 65 LTGMILAGSVGASIAWLSFRFEVRGIYFALLTIAAAEFARIMFSG-WEFVGAMQGLFFPA 123 + A VG ++ L FRF V+G+YFALLTIA AEF RI+F G Sbjct: 84 FAAVAAAVLVGGAVGALGFRFGVKGVYFALLTIAFAEFTRILFEHIPGLGGPGGLFLPVG 143 Query: 124 PTGGIEISMLRGDARFYYFVALALAALGIIGTEFISRSYLGYVWRAMRDDESAARALGVR 183 GI++ LRG +Y++ LA+ + + RS LGY W A+R+D+ AA ALG+ Sbjct: 144 DRTGIDLIHLRGHPLMFYYLILAMTVGIFLLCRKLVRSRLGYTWLAVREDQEAAAALGIN 203 Query: 184 TFQHKILVISISAATAAAGGGVLALVQGSIFPDSIMGMGLSVDVLIGPVVGGLGTTFGPL 243 F+ K+ + +SA A GG A ++FP+ GM S+++++ P+VGGLGT FGP+ Sbjct: 204 VFRAKLYAVMLSAGLTALGGVFFAFYYNNLFPNQAFGMNRSIEIILAPIVGGLGTLFGPI 263 Query: 244 VGSLAAIPLNHLMSALGDSL--RIPGLNNITYGVVMISVVWFLPDGIWP 290 +G+L PL ++ ++L + G+ + YG+ ++++V FLPDG+WP Sbjct: 264 LGALILTPLGEGITMATEALGFKAAGIKQLCYGLSLLAIVKFLPDGVWP 312