BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0010.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769358.1| hypothetical protein bll2718 [Bradyrhizobium ja... 306 2e-81 ref|YP_001238795.1| hypothetical protein BBta_2752 [Bradyrhizobi... 300 2e-79 ref|YP_001204462.1| putative signal peptide [Bradyrhizobium sp. ... 298 5e-79 ref|YP_004111025.1| nuclease [Rhodopseudomonas palustris DX-1] >... 265 7e-69 ref|NP_949897.1| nuclease [Rhodopseudomonas palustris CGA009] >g... 263 2e-68 >ref|NP_769358.1| hypothetical protein bll2718 [Bradyrhizobium japonicum USDA 110] dbj|BAC47983.1| bll2718 [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 151/263 (57%), Positives = 187/263 (71%), Gaps = 7/263 (2%) Query: 1 MRFRNPVATT--LLLACLSATTSLTATAGP----TASAVIKDAGTVQLGNTTYRLDGIDA 54 M F N A L A A++ P TA+A ++DA ++QLG+ TYRLDG+DA Sbjct: 1 MSFENSFAAARAFALVLFLALPGFLASSAPAFALTATATVRDANSIQLGDVTYRLDGVDA 60 Query: 55 PAVDQLCIDEHADVWTCGIEARDQLTRLIGGKQVHCDDIGVDPTFKKRRLGVCKIEGDPT 114 P +DQ+CID+HAD WTCGIEARDQL +LIG + V CDD+G + +F KR +C EGD Sbjct: 61 PELDQVCIDDHADPWTCGIEARDQLAKLIGKRAVRCDDVGPEKSFGKRHRAICTAEGDKA 120 Query: 115 SLSQVLVQKGYALNVEESATGRFKPDEATAKDNRAGLWKGCFVAPRDFRTARKDGALLGN 174 SL++ LV+ G+A+ E KP A AK AG+WKGCFVAP++FR+ +KDGALLG Sbjct: 121 SLNEQLVKLGFAI-AREPIKANVKPAAAEAKTASAGIWKGCFVAPQEFRSGKKDGALLGA 179 Query: 175 ACPGDRDQQIRDALFPDDLPMPASCNIKGKYAVRARVTGNVGIYHLQACRSYPGLGNPDR 234 AC DRD++IR LFPD+L MP SC++KGK AVRARVTGN+GIYHL+ C SYP PDR Sbjct: 180 ACRSDRDKEIRAVLFPDELTMPPSCSVKGKLAVRARVTGNIGIYHLRGCPSYPATTKPDR 239 Query: 235 WFCSEEDAQAAGFRRAYNCRPPK 257 WFCSE+DAQAAGFRRAYNCR PK Sbjct: 240 WFCSEDDAQAAGFRRAYNCRRPK 262 >ref|YP_001238795.1| hypothetical protein BBta_2752 [Bradyrhizobium sp. BTAi1] gb|ABQ34889.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 263 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/224 (61%), Positives = 172/224 (76%) Query: 34 IKDAGTVQLGNTTYRLDGIDAPAVDQLCIDEHADVWTCGIEARDQLTRLIGGKQVHCDDI 93 ++ T+QLG T YRLDGIDAP VDQLCID+HAD W+CG+EAR+QLTRLI G+ V CDD+ Sbjct: 39 VRSGDTLQLGETVYRLDGIDAPEVDQLCIDDHADPWSCGVEAREQLTRLIAGRAVRCDDL 98 Query: 94 GVDPTFKKRRLGVCKIEGDPTSLSQVLVQKGYALNVEESATGRFKPDEATAKDNRAGLWK 153 G D K RRLG+C ++GD SL+Q + + GYA++ + + R K D A AK+ G+WK Sbjct: 99 GPDKPLKSRRLGLCTVDGDKLSLNQQMARAGYAVSADPAVKYRAKDDIAAAKEALRGIWK 158 Query: 154 GCFVAPRDFRTARKDGALLGNACPGDRDQQIRDALFPDDLPMPASCNIKGKYAVRARVTG 213 GCFVAP +FRT +KDG+LLG +C DRD++IRD LFPD P C+IKGK+AVRARVTG Sbjct: 159 GCFVAPGEFRTDKKDGSLLGASCRSDRDREIRDVLFPDAPSAPPGCSIKGKFAVRARVTG 218 Query: 214 NVGIYHLQACRSYPGLGNPDRWFCSEEDAQAAGFRRAYNCRPPK 257 N+GIYHLQ C SYP PDRWFCSE+DA+A+GFRRA+NCR PK Sbjct: 219 NIGIYHLQGCPSYPATTEPDRWFCSEDDARASGFRRAFNCRAPK 262 >ref|YP_001204462.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL76225.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 263 Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 141/247 (57%), Positives = 179/247 (72%), Gaps = 5/247 (2%) Query: 16 LSATTSLTATAGPT-----ASAVIKDAGTVQLGNTTYRLDGIDAPAVDQLCIDEHADVWT 70 LS ++ AG T A+A ++ T+QLG+T YRLDGIDAP VDQLCID+HAD W+ Sbjct: 16 LSLCGAIVIAAGLTGSVLAATATVRSGDTIQLGDTVYRLDGIDAPEVDQLCIDDHADPWS 75 Query: 71 CGIEARDQLTRLIGGKQVHCDDIGVDPTFKKRRLGVCKIEGDPTSLSQVLVQKGYALNVE 130 CG+EAR+QLT+LI G+ V C+D+G D K R++G+C ++GD SL+Q + + G A++VE Sbjct: 76 CGVEAREQLTKLIAGRPVRCEDLGPDKPLKTRKIGICAVDGDKVSLNQQMARAGLAVSVE 135 Query: 131 ESATGRFKPDEATAKDNRAGLWKGCFVAPRDFRTARKDGALLGNACPGDRDQQIRDALFP 190 + R K D A AK+ GLWKGCFVAP +FR +KDGALLG +C DRD++IR LFP Sbjct: 136 PAVKARVKDDVAAAKEGLRGLWKGCFVAPAEFRADKKDGALLGASCRADRDREIRAVLFP 195 Query: 191 DDLPMPASCNIKGKYAVRARVTGNVGIYHLQACRSYPGLGNPDRWFCSEEDAQAAGFRRA 250 + P C IKGK+AVRARVTGN+GIYHLQ C SYP PDRWFCSE+DA+AAGFRRA Sbjct: 196 ETPSAPPGCTIKGKFAVRARVTGNIGIYHLQGCPSYPATTEPDRWFCSEDDAKAAGFRRA 255 Query: 251 YNCRPPK 257 +NCR K Sbjct: 256 FNCRAQK 262 >ref|YP_004111025.1| nuclease [Rhodopseudomonas palustris DX-1] gb|ADU46292.1| nuclease (SNase domain protein) [Rhodopseudomonas palustris DX-1] Length = 250 Score = 265 bits (676), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 162/242 (66%) Query: 13 LACLSATTSLTATAGPTASAVIKDAGTVQLGNTTYRLDGIDAPAVDQLCIDEHADVWTCG 72 L + ++ + A AV+KD TVQLG+ +RL+GIDAP +DQ C+++ AD CG Sbjct: 4 LIVMVLGLAMMTSPAVAADAVVKDGDTVQLGDKVFRLEGIDAPELDQRCVNQFADPSACG 63 Query: 73 IEARDQLTRLIGGKQVHCDDIGVDPTFKKRRLGVCKIEGDPTSLSQVLVQKGYALNVEES 132 IEARD L +LIGG+ V C D+G DP FK RRLG C I G+ SLS+ +VQ G+ALN Sbjct: 64 IEARDALVKLIGGRSVACRDLGPDPVFKGRRLGTCAIAGETDSLSRRMVQDGFALNAVTG 123 Query: 133 ATGRFKPDEATAKDNRAGLWKGCFVAPRDFRTARKDGALLGNACPGDRDQQIRDALFPDD 192 RF DEA A+D GLW+GCFVAP DFR +D AL G AC D+ + +A+FPD Sbjct: 124 GKDRFAGDEAKARDEHKGLWQGCFVAPNDFRRWNRDAALRGAACREDKRAALIEAMFPDT 183 Query: 193 LPMPASCNIKGKYAVRARVTGNVGIYHLQACRSYPGLGNPDRWFCSEEDAQAAGFRRAYN 252 M C IKGK A RAR+TGNVG+Y ++ C SY L P+RWFCSE+DA+AAGFR+AYN Sbjct: 184 PAMLPGCTIKGKIARRARITGNVGLYQIRGCPSYASLTKPNRWFCSEDDARAAGFRKAYN 243 Query: 253 CR 254 CR Sbjct: 244 CR 245 >ref|NP_949897.1| nuclease [Rhodopseudomonas palustris CGA009] ref|YP_001994007.1| nuclease [Rhodopseudomonas palustris TIE-1] emb|CAE30003.1| Staphylococcus nuclease (SNase-like) [Rhodopseudomonas palustris CGA009] gb|ACF03532.1| nuclease (SNase domain protein) [Rhodopseudomonas palustris TIE-1] Length = 249 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/222 (56%), Positives = 156/222 (70%) Query: 33 VIKDAGTVQLGNTTYRLDGIDAPAVDQLCIDEHADVWTCGIEARDQLTRLIGGKQVHCDD 92 V+KD T+QLG+ +RL+G+DAP +DQ C+++ AD CG+EARD L +LIGG+ V C D Sbjct: 23 VVKDGDTLQLGDKVFRLEGVDAPELDQRCVNQFADPSACGLEARDALVKLIGGRSVTCRD 82 Query: 93 IGVDPTFKKRRLGVCKIEGDPTSLSQVLVQKGYALNVEESATGRFKPDEATAKDNRAGLW 152 +G DP FK RRLG C I G+ SLS+ LVQ G+ALN S RF DE AKD R GLW Sbjct: 83 LGPDPVFKGRRLGTCAIAGETDSLSRRLVQDGFALNAAASGKDRFAGDETKAKDERKGLW 142 Query: 153 KGCFVAPRDFRTARKDGALLGNACPGDRDQQIRDALFPDDLPMPASCNIKGKYAVRARVT 212 +GCFVAP DFR KD L G AC D+ ++ +A+FPD M C IKGK A RAR+T Sbjct: 143 QGCFVAPNDFRRWDKDAPLRGAACREDKHSELIEAMFPDQPAMLPGCTIKGKLARRARIT 202 Query: 213 GNVGIYHLQACRSYPGLGNPDRWFCSEEDAQAAGFRRAYNCR 254 GNVG+Y L+ C SY L P+RWFCSE+DA+AAG+R+AYNCR Sbjct: 203 GNVGVYQLRGCPSYASLTKPNRWFCSEDDARAAGYRKAYNCR 244