BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0005.p         (75 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532131.1| hypothetical protein RPC_2258 [Rhodopseudomonas...   112   2e-23
ref|YP_782276.1| hypothetical protein RPE_3364 [Rhodopseudomonas...   107   7e-22
ref|ZP_08073591.1| hypothetical protein Met49242DRAFT_2979 [Meth...   103   1e-20
ref|YP_004013214.1| hypothetical protein Rvan_2909 [Rhodomicrobi...   100   6e-20
ref|YP_003756439.1| hypothetical protein Hden_2321 [Hyphomicrobi...    98   5e-19

>ref|YP_532131.1| hypothetical protein RPC_2258 [Rhodopseudomonas palustris BisB18]
 gb|ABD87812.1| hypothetical protein RPC_2258 [Rhodopseudomonas palustris BisB18]
          Length = 78

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 62/75 (82%)

Query: 1  MDALTLFGLFAVTMMLVCYAAEDRSPWFILAFAVSCALGSAYGFLQGAWPFGLVEAIWAI 60
          MDALTLFGL AVT ML+CYA E+RS W++L FAV+C LGS YGF+QGAWPFGLVEAIWA 
Sbjct: 1  MDALTLFGLLAVTAMLICYAMEERSHWYVLGFAVACGLGSIYGFMQGAWPFGLVEAIWAG 60

Query: 61 VAARRWLLRRTADSA 75
          VA RRW+L+  A  A
Sbjct: 61 VALRRWMLKPRALQA 75


>ref|YP_782276.1| hypothetical protein RPE_3364 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07296.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 74

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 1  MDALTLFGLFAVTMMLVCYAAEDRSPWFILAFAVSCALGSAYGFLQGAWPFGLVEAIWAI 60
          MDALT FGLFAVT ML+CYA E+RS WF+  FA++C LGS YGFLQGAWPFG+VEAIWA 
Sbjct: 1  MDALTWFGLFAVTAMLLCYALEERSHWFVFGFAMACGLGSMYGFLQGAWPFGVVEAIWAG 60

Query: 61 VAARRWLLR 69
          VA RRW+L+
Sbjct: 61 VALRRWILK 69


>ref|ZP_08073591.1| hypothetical protein Met49242DRAFT_2979 [Methylocystis sp. ATCC
          49242]
 gb|EFX98690.1| hypothetical protein Met49242DRAFT_2979 [Methylocystis sp. ATCC
          49242]
          Length = 70

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 56/66 (84%)

Query: 1  MDALTLFGLFAVTMMLVCYAAEDRSPWFILAFAVSCALGSAYGFLQGAWPFGLVEAIWAI 60
          MDALT FGLFAV+ MLV YA E RS WF+LAFA SCA+GS YGFLQGAWPFG+VEAIW++
Sbjct: 1  MDALTWFGLFAVSAMLVTYALEARSHWFVLAFAASCAMGSVYGFLQGAWPFGVVEAIWSL 60

Query: 61 VAARRW 66
          VA  RW
Sbjct: 61 VALNRW 66


>ref|YP_004013214.1| hypothetical protein Rvan_2909 [Rhodomicrobium vannielii ATCC
          17100]
 gb|ADP72115.1| hypothetical protein Rvan_2909 [Rhodomicrobium vannielii ATCC
          17100]
          Length = 77

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 1  MDALTLFGLFAVTMMLVCYAAEDRSPWFILAFAVSCALGSAYGFLQGAWPFGLVEAIWAI 60
          MD LT FGL AV++ML+ YA E+ SPWFILAFA SC L SAYGFLQGAWPFGLVEAIWA+
Sbjct: 1  MDGLTFFGLLAVSLMLLFYALEENSPWFILAFAGSCVLASAYGFLQGAWPFGLVEAIWAV 60

Query: 61 VAARRWLLRRTADS 74
          VA  R+   R AD 
Sbjct: 61 VALARF-RSRLADK 73


>ref|YP_003756439.1| hypothetical protein Hden_2321 [Hyphomicrobium denitrificans ATCC
          51888]
 gb|ADJ24118.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
          51888]
          Length = 79

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 54/69 (78%)

Query: 2  DALTLFGLFAVTMMLVCYAAEDRSPWFILAFAVSCALGSAYGFLQGAWPFGLVEAIWAIV 61
          DALTLFGL AV++ML+ Y  E+ SPW I  FA++CA+GS YGFLQGAWPFGLVE +W  +
Sbjct: 4  DALTLFGLVAVSLMLLFYTFEESSPWCIFGFAIACAMGSVYGFLQGAWPFGLVEGVWTFI 63

Query: 62 AARRWLLRR 70
          A +RW  RR
Sbjct: 64 ALKRWQKRR 72