BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0004.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002287749.1| hypothetical protein OCAR_4743 [Oligotropha ...    49   2e-04
ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacteriu...    38   0.48 
ref|YP_002460643.1| OmpA/MotB domain-containing protein [Desulfi...    38   0.51 
ref|ZP_01127518.1| hypothetical protein NB231_02668 [Nitrococcus...    35   3.3  

>ref|YP_002287749.1| hypothetical protein OCAR_4743 [Oligotropha carboxidovorans OM5]
 ref|YP_004634126.1| hypothetical protein OCA5_c32070 [Oligotropha carboxidovorans OM5]
 gb|ACI91883.1| hypothetical protein OCAR_4743 [Oligotropha carboxidovorans OM5]
 gb|AEI04255.1| hypothetical protein OCA4_c31550 [Oligotropha carboxidovorans OM4]
 gb|AEI07885.1| hypothetical protein OCA5_c32070 [Oligotropha carboxidovorans OM5]
          Length = 122

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 1   MDASRTMIQSSPHATGSRRWRSLLAGLISLALVLSFFHGWTSDGDADAAHGFSIAQSIDD 60
           M A R M+     A G R  R L A ++SLA+ LS FHG  S+ +  A    ++   ++ 
Sbjct: 1   MTAIRHMMDCRTTA-GLRALRFLFAAVLSLAVSLSLFHGLASEIEDHAPPSATLV--LEQ 57

Query: 61  ASAGGKAPAHPASPHGDHCLTHVASAA--PQETAFPIAYAPHSYSHSSTGLPASADRLSP 118
           A       AH      DHCL H+ +    P   A    Y      H+ T  P +A   SP
Sbjct: 58  AQTASHQTAH--HQMADHCLAHMMAEVDHPASVAVQQDYKVQLSWHNDTAQPNAATD-SP 114

Query: 119 FKPPRA 124
           FKPPRA
Sbjct: 115 FKPPRA 120


>ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51]
 dbj|BAE84822.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score = 38.1 bits (87), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 10 SSPHATGSRRWRSLLAGLISLALVLSFFHGWTSDGDADAAHGFSIAQSIDDASAGGKAPA 69
            P    S RW    + LI+L ++  FF    S    DA    SIA+S+  A  GG    
Sbjct: 7  EEPEKDNSERWLLTYSDLITLLMI--FFVVMYSMSKVDAEKFQSIAESLSVALGGGTRVE 64

Query: 70 HPASPHGDHCLTHVASAAPQETAFP 94
            ASP G   +    +  PQE   P
Sbjct: 65 IGASPSGPSLIETYPTNKPQEGKEP 89


>ref|YP_002460643.1| OmpA/MotB domain-containing protein [Desulfitobacterium hafniense
          DCB-2]
 gb|ACL22207.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 275

 Score = 38.1 bits (87), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 10 SSPHATGSRRWRSLLAGLISLALVLSFFHGWTSDGDADAAHGFSIAQSIDDASAGGKAPA 69
            P    S RW    + LI+L ++  FF    S    DA    SIA+S+  A  GG    
Sbjct: 7  EEPEKDNSERWLLTYSDLITLLMI--FFVVMYSMSKVDAEKFQSIAESLSVALGGGTRVE 64

Query: 70 HPASPHGDHCLTHVASAAPQETAFP 94
            ASP G   +    +  PQE   P
Sbjct: 65 IGASPSGPSLIETYPTNKPQEGKAP 89


>ref|ZP_01127518.1| hypothetical protein NB231_02668 [Nitrococcus mobilis Nb-231]
 gb|EAR21634.1| hypothetical protein NB231_02668 [Nitrococcus mobilis Nb-231]
          Length = 114

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 27  LISLALVLSFFHGWTSDGDADAAHGFSI------------AQSIDDASAGGKAPAHPASP 74
           L S A VL F   W     A   HG S+            A S  +     + PA PA  
Sbjct: 6   LQSWAFVLVFAIAWAGVAGAMDLHGLSVTSADVAHLTKAKADSRGEQHGATEQPAQPAFY 65

Query: 75  HGDHCLTHVASAAPQETAFPIAYAPHSYSHSSTGLPASADRLSPFKPPRA 124
           H DHC  H       + + P+    HS + +    P   D   P  PP+A
Sbjct: 66  HCDHCQAHFLGTLTTQQSQPLLIR-HSVTGTRPVAPTEVDLSPPETPPKA 114