BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0016.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531622.1| hypothetical protein RPC_1744 [Rhodopseudomonas... 508 e-142 ref|YP_577899.1| hypothetical protein Nham_2660 [Nitrobacter ham... 492 e-137 ref|ZP_01047660.1| hypothetical protein NB311A_17901 [Nitrobacte... 483 e-134 ref|YP_780766.1| hypothetical protein RPE_1838 [Rhodopseudomonas... 471 e-131 ref|NP_769680.1| hypothetical protein bll3040 [Bradyrhizobium ja... 456 e-126 >ref|YP_531622.1| hypothetical protein RPC_1744 [Rhodopseudomonas palustris BisB18] gb|ABD87303.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 373 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/363 (67%), Positives = 303/363 (83%) Query: 1 MSLKPETAPESLLDELQTTLAHGTVARRVETLRRVTDLFINGSVNYSNEQIVLFDDVFQC 60 M L+ + A E+LLDELQ TLAHG VARRVETLRRVTDLF++G+V+YS+EQ+ LFDDVF C Sbjct: 1 MHLRAKAASENLLDELQDTLAHGPVARRVETLRRVTDLFVSGAVDYSDEQVALFDDVFAC 60 Query: 61 LLEHIENSSKALLANRLAPIDTAPPQTIRTLAFDDLIEVAGPVLTLSPRLDDDTLIETAR 120 L+ HIE +KALLA RLAPI APP+ IR LAFDDLI+VA PVLT S +LDD LIE AR Sbjct: 61 LVRHIEAKAKALLAQRLAPIAKAPPRIIRHLAFDDLIDVAAPVLTQSTQLDDHALIENAR 120 Query: 121 SKSQAHLLAISNRKTLSGAVTDVLVLRGNDEVIQSAVNNPGAEFTERGFTRLVSRAEGDD 180 SKSQ HLLAIS R+ LSGAVT+VLV GN EV+ S VNNPGAEF+ +G++ L SR E DD Sbjct: 121 SKSQGHLLAISKRQVLSGAVTEVLVELGNIEVVHSTVNNPGAEFSAQGYSTLASRVEIDD 180 Query: 181 NLSTCVALRPNIPRHLYLKLVAKASDAVRQRLQAANPQQAKEIPIAVKEATRRARSAPAA 240 LS +++ +IPRH YLKL+AKAS +VR RL+AA+PQ+A EI AV+EA+RRAR APAA Sbjct: 181 TLSALISMVSSIPRHHYLKLIAKASVSVRSRLEAAHPQEANEIATAVREASRRARLAPAA 240 Query: 241 VTPDTTIAHALVKSLYQDGRLDEFQLAAFAEAGKFDETNASLAALANVSVSVAENMMIET 300 ++ +T IAH LV++LY+DGRLDE + FAE GKFDETNA++A +ANV+VSVAE++MIE+ Sbjct: 241 MSKETVIAHGLVRALYEDGRLDEKLVGNFAEEGKFDETNAAIACMANVTVSVAESIMIES 300 Query: 301 RAEGVMILAKVSGLSWSTVRAIINLRDDISGGEPTDLQACKDTYERLRPSTAQQVLRFHR 360 RAEGV+ILAKV+GL+WSTVRAII+LRD++SG + D++AC+ TYE+LRPSTAQQVLRFHR Sbjct: 301 RAEGVLILAKVAGLTWSTVRAIISLRDELSGMKSADIEACRLTYEQLRPSTAQQVLRFHR 360 Query: 361 MQQ 363 MQQ Sbjct: 361 MQQ 363 >ref|YP_577899.1| hypothetical protein Nham_2660 [Nitrobacter hamburgensis X14] gb|ABE63439.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 372 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 251/365 (68%), Positives = 301/365 (82%) Query: 1 MSLKPETAPESLLDELQTTLAHGTVARRVETLRRVTDLFINGSVNYSNEQIVLFDDVFQC 60 M+ K LLDELQ TLAHGTV RRVETLRRVTDLF+N +V+YS+EQI +FDDVF C Sbjct: 1 MASKSAAPSAGLLDELQNTLAHGTVTRRVETLRRVTDLFLNNTVDYSDEQITVFDDVFNC 60 Query: 61 LLEHIENSSKALLANRLAPIDTAPPQTIRTLAFDDLIEVAGPVLTLSPRLDDDTLIETAR 120 L H+E ++K LLA RLAP+ APPQ I LAFDDLIEVA PVL+ S RL DD L+E AR Sbjct: 61 LSRHMETAAKVLLARRLAPVAKAPPQIIHALAFDDLIEVAAPVLSQSERLGDDALVENAR 120 Query: 121 SKSQAHLLAISNRKTLSGAVTDVLVLRGNDEVIQSAVNNPGAEFTERGFTRLVSRAEGDD 180 SKSQAHLLAIS RK LSGAVTDVLV RGNDEV++S VNNPGAEF+E+GFTRLV+RAEGDD Sbjct: 121 SKSQAHLLAISTRKVLSGAVTDVLVERGNDEVVRSTVNNPGAEFSEQGFTRLVARAEGDD 180 Query: 181 NLSTCVALRPNIPRHLYLKLVAKASDAVRQRLQAANPQQAKEIPIAVKEATRRARSAPAA 240 ++TCV +RP+IPRH YLKL+AKAS +VR RL AANP +A ++ + V E RRARSAPAA Sbjct: 181 EIATCVGMRPSIPRHHYLKLIAKASASVRARLAAANPHRADDVSVVVSEVARRARSAPAA 240 Query: 241 VTPDTTIAHALVKSLYQDGRLDEFQLAAFAEAGKFDETNASLAALANVSVSVAENMMIET 300 ++ +TTIAH LV+SLY+DGRLDE ++A+FA+AGKFDETNA++A LANVSV+VAE MMIE+ Sbjct: 241 ISRETTIAHGLVRSLYEDGRLDEHEVASFAQAGKFDETNAAIACLANVSVAVAEKMMIES 300 Query: 301 RAEGVMILAKVSGLSWSTVRAIINLRDDISGGEPTDLQACKDTYERLRPSTAQQVLRFHR 360 + EGV+ILAKV GLSWSTV+AII++R D++ TD+ A + YERLR STAQQVLRFHR Sbjct: 301 QTEGVLILAKVGGLSWSTVKAIIDMRKDLADIAVTDIDAAERMYERLRLSTAQQVLRFHR 360 Query: 361 MQQSA 365 QQ+A Sbjct: 361 TQQAA 365 >ref|ZP_01047660.1| hypothetical protein NB311A_17901 [Nitrobacter sp. Nb-311A] gb|EAQ34420.1| hypothetical protein NB311A_17901 [Nitrobacter sp. Nb-311A] Length = 375 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 242/358 (67%), Positives = 293/358 (81%) Query: 11 SLLDELQTTLAHGTVARRVETLRRVTDLFINGSVNYSNEQIVLFDDVFQCLLEHIENSSK 70 SLL+ELQT L HGT+ARR+ETL+RVTDLF+N V+YS+EQI LFDDVF+CL+ HIE S+K Sbjct: 10 SLLEELQTVLTHGTIARRIETLQRVTDLFLNNPVDYSDEQITLFDDVFKCLICHIEGSAK 69 Query: 71 ALLANRLAPIDTAPPQTIRTLAFDDLIEVAGPVLTLSPRLDDDTLIETARSKSQAHLLAI 130 ALLA RLAP+ APPQ I+ LAFDDLIEVA PVL+ S RL DD LIE RSK QAHLLAI Sbjct: 70 ALLARRLAPVAKAPPQIIQVLAFDDLIEVAAPVLSQSQRLGDDVLIENVRSKGQAHLLAI 129 Query: 131 SNRKTLSGAVTDVLVLRGNDEVIQSAVNNPGAEFTERGFTRLVSRAEGDDNLSTCVALRP 190 S RK LS AVTD L+ RGNDEV++S VNNPGA+F+ERGFT+LV RAEG+D+++TCV +RP Sbjct: 130 STRKVLSVAVTDALIERGNDEVVKSTVNNPGADFSERGFTQLVQRAEGNDDIATCVGMRP 189 Query: 191 NIPRHLYLKLVAKASDAVRQRLQAANPQQAKEIPIAVKEATRRARSAPAAVTPDTTIAHA 250 +IPRH YLKL+AKAS AVR RL AANP +A ++ V E RRARSAP A++ +TTIAH Sbjct: 190 SIPRHHYLKLIAKASAAVRARLAAANPHRANDVSAVVSEVARRARSAPGAISEETTIAHG 249 Query: 251 LVKSLYQDGRLDEFQLAAFAEAGKFDETNASLAALANVSVSVAENMMIETRAEGVMILAK 310 LV+SLY+DGRLDE ++A+FAEA KFDETNA++A LANVS++ AE MMIE++ EGV+ILAK Sbjct: 250 LVRSLYEDGRLDEQEVASFAEARKFDETNAAIACLANVSIADAEKMMIESQTEGVLILAK 309 Query: 311 VSGLSWSTVRAIINLRDDISGGEPTDLQACKDTYERLRPSTAQQVLRFHRMQQSAPAA 368 V GLSW+TV II++R D+ E TD+ A + TYE LR STAQQVLRFHR QQ+A A Sbjct: 310 VGGLSWATVETIIDMRRDLMHVEMTDIDAARQTYECLRRSTAQQVLRFHRTQQAAAAG 367 >ref|YP_780766.1| hypothetical protein RPE_1838 [Rhodopseudomonas palustris BisA53] gb|ABJ05786.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 378 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/353 (64%), Positives = 284/353 (80%), Gaps = 1/353 (0%) Query: 11 SLLDELQTTLAHGTVARRVETLRRVTDLFINGSVNYSNEQIVLFDDVFQCLLEHIENSSK 70 SLLDELQ TLAHGTVARRVETLRRVTDLFI G+V+YS++Q+ +FDDVF+C+++HIE ++K Sbjct: 16 SLLDELQATLAHGTVARRVETLRRVTDLFIEGAVDYSDQQVAVFDDVFECMVQHIEATAK 75 Query: 71 ALLANRLAPIDTAPPQTIRTLAFDDLIEVAGPVLTLSPRLDDDTLIETARSKSQAHLLAI 130 LLA RLAPI AP + I LAFDDL+EVA PVL+ S +LDD TLI+ AR KSQ H+LAI Sbjct: 76 VLLAERLAPIAKAPKRIIHHLAFDDLLEVAAPVLSQSQQLDDTTLIDNARRKSQGHMLAI 135 Query: 131 SNRKTLSGAVTDVLVLRGNDEVIQSAVNNPGAEFTERGFTRLVSRAEGDDNLSTCVALRP 190 S R+ LSGAVT+VLV GN EV+ S VNNPGA+F+E+G+ +L R + +D L++ V + Sbjct: 136 SKRQALSGAVTEVLVELGNHEVVHSTVNNPGAKFSEKGYIKLAERVDNEDELTSLVGVVA 195 Query: 191 NIPRHLYLKLVAKASDAVRQRLQAANPQQAKEIPIAVKEATRRARSAPAAVTPDTTIAHA 250 ++PRH YLKLVA+AS +VR RLQA NPQ A EI AV+E RRARS P + +TTIAH Sbjct: 196 SMPRHHYLKLVAQASASVRARLQAENPQAAAEIATAVREVGRRARS-PKVASQETTIAHG 254 Query: 251 LVKSLYQDGRLDEFQLAAFAEAGKFDETNASLAALANVSVSVAENMMIETRAEGVMILAK 310 LV+SLY+DGRLD+ + +FA+ GKFDETNA++A LA VSV VAE MM+E++ EGV+ILAK Sbjct: 255 LVRSLYEDGRLDDSIVKSFAKDGKFDETNAAIACLARVSVLVAETMMVESKTEGVLILAK 314 Query: 311 VSGLSWSTVRAIINLRDDISGGEPTDLQACKDTYERLRPSTAQQVLRFHRMQQ 363 V+GLSWSTV+AII LRD+++G +L C DTYE+LRPSTAQQVLRFHRMQQ Sbjct: 315 VAGLSWSTVQAIIGLRDELAGTTAPELDVCHDTYEQLRPSTAQQVLRFHRMQQ 367 >ref|NP_769680.1| hypothetical protein bll3040 [Bradyrhizobium japonicum USDA 110] dbj|BAC48305.1| bll3040 [Bradyrhizobium japonicum USDA 110] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/360 (64%), Positives = 291/360 (80%), Gaps = 3/360 (0%) Query: 10 ESLLDELQTTLAHGTVARRVETLRRVTDLFINGSVNYSNEQIVLFDDVFQCLLEHIENSS 69 E+LL+ELQ L+HGTV RRVE LRRVTDLF+ +V+YS+E I +FDDVFQCL+E IE S+ Sbjct: 10 ENLLEELQAALSHGTVVRRVEALRRVTDLFVGNAVDYSDEHIRVFDDVFQCLIEQIETSA 69 Query: 70 KALLANRLAPIDTAPPQTIRTLAFDDLIEVAGPVLTLSPRLDDDTLIETARSKSQAHLLA 129 + LLA+RLAPI APP+ IRTLA D++IEVAGPVL+ S RLD+ TLIE AR++ QAHL A Sbjct: 70 RTLLADRLAPIAEAPPKIIRTLALDEVIEVAGPVLSKSERLDEATLIEIARTRGQAHLKA 129 Query: 130 ISNRKTLSGAVTDVLVLRGNDEVIQSAVNNPGAEFTERGFTRLVSRAEGDDNLSTCVALR 189 IS R+ LS A+TDVLV RGN++V+QS V NPGA+ +E + LV RAE DD+L+TC+ LR Sbjct: 130 ISLRRVLSAALTDVLVTRGNEDVVQSTVGNPGAQLSEDSLSDLVMRAERDDDLATCIGLR 189 Query: 190 PNIPRHLYLKLVAKASDAVRQRLQAANPQQAKEIPIAVKEATRRARSAPAAVTPDTTIAH 249 P++PRH YLKLVAKAS +VR++L+AA+P+ A E+ V+EA +R R+ AA+T T IA Sbjct: 190 PDLPRHHYLKLVAKASLSVRRKLEAAHPELADEVSSVVQEAAQRVRA--AAMTRQTEIAR 247 Query: 250 ALVKSLYQDGRLDEFQLAAFAEAGKFDETNASLAALANVSVSVAENMMIETRAEGVMILA 309 ALVKSL++DGRL+EFQ+ AFAE GKFDETNA LAALA V+V AENMMIE+R EGVMILA Sbjct: 248 ALVKSLHEDGRLNEFQVTAFAEQGKFDETNAGLAALAGVAVETAENMMIESRTEGVMILA 307 Query: 310 KVSGLSWSTVRAIINLRDDISGGEPTDLQACKDTYERLRPSTAQQVLRFHRMQQ-SAPAA 368 KV+G+SW++VRAII LR+ +SGG TD+ +DTYE LR STAQQVLRFHRMQ + PAA Sbjct: 308 KVAGMSWASVRAIIALREKLSGGSQTDMLTLRDTYEALRSSTAQQVLRFHRMQHGTTPAA 367