BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0013.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769682.1| RNA polymerase sigma factor [Bradyrhizobium jap...   352   1e-95
ref|YP_001239039.1| RNA polymerase sigma factor [Bradyrhizobium ...   349   1e-94
ref|YP_001204723.1| RNA polymerase sigma factor [Bradyrhizobium ...   347   4e-94
ref|YP_577898.1| RNA polymerase sigma factor [Nitrobacter hambur...   347   5e-94
ref|YP_318854.1| RNA polymerase sigma factor [Nitrobacter winogr...   342   1e-92

>ref|NP_769682.1| RNA polymerase sigma factor [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48307.1| blr3042 [Bradyrhizobium japonicum USDA 110]
          Length = 187

 Score =  352 bits (903), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/186 (92%), Positives = 180/186 (96%)

Query: 4   TQAASDDVLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDVWRQ 63
           TQAASD++LIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQ AEDLISEVFLDVWRQ
Sbjct: 2   TQAASDEILIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQAAEDLISEVFLDVWRQ 61

Query: 64  AGKFEGRSAVSTWLLAITRFKALSSLRRRKDAELDDEAANAIEDTSDDPETVVQKKDTGD 123
           AGKFEGRSAVSTWLLAITRFKALS+LRRRKD ELD++AANAIEDTSD+PETVVQKKDT +
Sbjct: 62  AGKFEGRSAVSTWLLAITRFKALSALRRRKDFELDEDAANAIEDTSDNPETVVQKKDTSE 121

Query: 124 TLRRCLTGLSAEHREIVDLVYYHEKSVEDVAEIVGIPENTVKTRLFYARKKLAELLKAAG 183
            LR CLTGLS EHREIVDLVYYHEKSVE+VAEIVGIPENTVKTRLFYARKKLAELLKAAG
Sbjct: 122 ALRECLTGLSPEHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLKAAG 181

Query: 184 VERGWP 189
           VERGWP
Sbjct: 182 VERGWP 187


>ref|YP_001239039.1| RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1]
 gb|ABQ35133.1| Putative RNA polymerase ECF-type sigma factor, putative carQ
           [Bradyrhizobium sp. BTAi1]
          Length = 189

 Score =  349 bits (896), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/189 (89%), Positives = 180/189 (95%)

Query: 1   LSATQAASDDVLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60
           +S T AASD+ L+ARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV
Sbjct: 1   MSVTAAASDEALMARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60

Query: 61  WRQAGKFEGRSAVSTWLLAITRFKALSSLRRRKDAELDDEAANAIEDTSDDPETVVQKKD 120
           WRQAGKFEGRSAVSTWLLAITRFKALS+LRRRKD EL+DEAANAIEDTSDDPE  VQKK+
Sbjct: 61  WRQAGKFEGRSAVSTWLLAITRFKALSALRRRKDVELEDEAANAIEDTSDDPEIAVQKKN 120

Query: 121 TGDTLRRCLTGLSAEHREIVDLVYYHEKSVEDVAEIVGIPENTVKTRLFYARKKLAELLK 180
           TG+ LR+CLT LS +HREIVDLVYYHEKSVE+VAEIVGIPENTVKTRLFYARKKLAELLK
Sbjct: 121 TGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLK 180

Query: 181 AAGVERGWP 189
           AAG+ERGWP
Sbjct: 181 AAGIERGWP 189


>ref|YP_001204723.1| RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278]
 emb|CAL76486.1| Putative RNA polymerase ECF-type sigma factor, possible carQ
           [Bradyrhizobium sp. ORS 278]
          Length = 189

 Score =  347 bits (891), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/189 (88%), Positives = 179/189 (94%)

Query: 1   LSATQAASDDVLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60
           +S T AASD+ LIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV
Sbjct: 1   MSVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60

Query: 61  WRQAGKFEGRSAVSTWLLAITRFKALSSLRRRKDAELDDEAANAIEDTSDDPETVVQKKD 120
           WRQAGKFEGRSAVSTWLLAITRFKALS+LRRRKD EL+D+AANAIEDTSDDPE   QKK+
Sbjct: 61  WRQAGKFEGRSAVSTWLLAITRFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKN 120

Query: 121 TGDTLRRCLTGLSAEHREIVDLVYYHEKSVEDVAEIVGIPENTVKTRLFYARKKLAELLK 180
           TG+ LR+CLT LS +HREIVDLVYYHEKSVE+VAEIVGIPENTVKTRLFYARKKLAELLK
Sbjct: 121 TGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLK 180

Query: 181 AAGVERGWP 189
           AAG+ERGWP
Sbjct: 181 AAGIERGWP 189


>ref|YP_577898.1| RNA polymerase sigma factor [Nitrobacter hamburgensis X14]
 gb|ABE63438.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis X14]
          Length = 189

 Score =  347 bits (890), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 168/189 (88%), Positives = 178/189 (94%)

Query: 1   LSATQAASDDVLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60
           +SA QAASD+ LIARIAQGDRLAMQVLYGRHHVRV+RFGLRLVR+EQ+AEDLI+EVFLDV
Sbjct: 1   MSAAQAASDEALIARIAQGDRLAMQVLYGRHHVRVFRFGLRLVRNEQIAEDLINEVFLDV 60

Query: 61  WRQAGKFEGRSAVSTWLLAITRFKALSSLRRRKDAELDDEAANAIEDTSDDPETVVQKKD 120
           WRQAGKFEGRSAVSTWLLAITRFKALS+LRRRKDAELDDE ANAIED SDDPE  VQKKD
Sbjct: 61  WRQAGKFEGRSAVSTWLLAITRFKALSALRRRKDAELDDETANAIEDQSDDPEVTVQKKD 120

Query: 121 TGDTLRRCLTGLSAEHREIVDLVYYHEKSVEDVAEIVGIPENTVKTRLFYARKKLAELLK 180
           TG+ LR CL  LSAEHREIVDLVYYHEKSVE+VAEIVGIPENTVKTRLFYARKKLA LLK
Sbjct: 121 TGNALRMCLMQLSAEHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAGLLK 180

Query: 181 AAGVERGWP 189
           AAG+ERGWP
Sbjct: 181 AAGIERGWP 189


>ref|YP_318854.1| RNA polymerase sigma factor [Nitrobacter winogradskyi Nb-255]
 gb|ABA05502.1| RNA polymerase, sigma subunit, ECF family [Nitrobacter winogradskyi
           Nb-255]
          Length = 189

 Score =  342 bits (878), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/189 (87%), Positives = 177/189 (93%)

Query: 1   LSATQAASDDVLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV 60
           +SATQAASD+ LIARIAQGDRLAMQVLYGRHHV+V+RFGLRLVR+EQ+AEDLISEVFLDV
Sbjct: 1   MSATQAASDEALIARIAQGDRLAMQVLYGRHHVKVFRFGLRLVRNEQIAEDLISEVFLDV 60

Query: 61  WRQAGKFEGRSAVSTWLLAITRFKALSSLRRRKDAELDDEAANAIEDTSDDPETVVQKKD 120
           WRQAGKFEGRSAVSTWLLAI RFKALS+LRRRKDAELDDE AN IED SDDPE  VQKKD
Sbjct: 61  WRQAGKFEGRSAVSTWLLAIMRFKALSALRRRKDAELDDETANEIEDQSDDPEVTVQKKD 120

Query: 121 TGDTLRRCLTGLSAEHREIVDLVYYHEKSVEDVAEIVGIPENTVKTRLFYARKKLAELLK 180
           TG+ LR+CL  LSAEHREIVDLVYYHEKSVE+VAEIVGIPENTVKTRLFYARKKLA LL+
Sbjct: 121 TGNALRKCLMQLSAEHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAGLLQ 180

Query: 181 AAGVERGWP 189
            AG+ERGWP
Sbjct: 181 EAGIERGWP 189