BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0008.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_487152.1| hypothetical protein RPB_3546 [Rhodopseudomonas...   139   1e-31
ref|YP_569053.1| hypothetical protein RPD_1917 [Rhodopseudomonas...   130   6e-29
ref|YP_531625.1| hypothetical protein RPC_1747 [Rhodopseudomonas...   128   2e-28
ref|YP_004110002.1| hypothetical protein Rpdx1_3702 [Rhodopseudo...   121   4e-26
ref|YP_001991022.1| hypothetical protein Rpal_2024 [Rhodopseudom...   118   4e-25

>ref|YP_487152.1| hypothetical protein RPB_3546 [Rhodopseudomonas palustris HaA2]
 gb|ABD08241.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 182

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 111/177 (62%), Gaps = 24/177 (13%)

Query: 2   ARGQEIVARWCNLAEQRLEHLTELFETGRWRRYHSEQAFLENIREARAAVDIWRELLSRE 61
           ARG+ I+ RWC LAEQRLE+LTE+FE+GRWRR+ SE AFLENI+EA+AAV+ WR+LL RE
Sbjct: 8   ARGRAIIERWCVLAEQRLEYLTEMFESGRWRRFFSETAFLENIQEAKAAVETWRDLLYRE 67

Query: 62  ASLDNSPIDLSWLGRGRSKLPPRDISPVP-ERRSEAATLAEAAMTAVAAALETATEVLEQ 120
           A++DN PIDLSWLG  ++ LPPR I  +  E  +++A   + A T+V  ALE A+   + 
Sbjct: 68  ATIDNQPIDLSWLGHNKN-LPPRQIFYLSDETAADSARTLQFAPTSVVPALEQASVAADY 126

Query: 121 PLTVADAPPLEMPPPA---------VRPPV-----------LDLDTIQRRYPLLRNA 157
            L  A  P L + P           +  PV           LDL  + +RYPLLR A
Sbjct: 127 EL--AGLPRLSIVPSFESDDILEADIFEPVERDERPAWQHALDLGQLAQRYPLLRKA 181


>ref|YP_569053.1| hypothetical protein RPD_1917 [Rhodopseudomonas palustris BisB5]
 gb|ABE39152.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 180

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 107/176 (60%), Gaps = 23/176 (13%)

Query: 2   ARGQEIVARWCNLAEQRLEHLTELFETGRWRRYHSEQAFLENIREARAAVDIWRELLSRE 61
           +RG+ IV RWC LAEQRLE+LTELFETGRWRR+ SE AFLENI+EA+AAV+ WR+LL RE
Sbjct: 7   SRGRAIVERWCVLAEQRLEYLTELFETGRWRRFFSEVAFLENIQEAKAAVETWRDLLDRE 66

Query: 62  ASLDNSPIDLSWLGRGRSKLPPRDISPVPERRSEAATLAEA----AMTAVAAALETATEV 117
           AS+ N P DLSWLGR ++ LPPR I  + +    AA  AE     +  A  A+   + E+
Sbjct: 67  ASVGNQPADLSWLGRNKN-LPPRPIFYLSD--ETAADFAETRRFASPPAAPASACASIEI 123

Query: 118 LEQP------LTVADAPPLEMPPPAV------RPP----VLDLDTIQRRYPLLRNA 157
            E+P      +  +  P   + P  V       PP     LDL  +  RYPLLR A
Sbjct: 124 DEEPSPPRLSIVASVEPDFAIDPDVVELTQPDEPPAWQHALDLGQLAERYPLLRKA 179


>ref|YP_531625.1| hypothetical protein RPC_1747 [Rhodopseudomonas palustris BisB18]
 gb|ABD87306.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 159

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 98/158 (62%), Gaps = 5/158 (3%)

Query: 1   VARGQEIVARWCNLAEQRLEHLTELFETGRWRRYHSEQAFLENIREARAAVDIWRELLSR 60
           V RG+ +V RWC LAEQRLE+LTELFETGRWRRYHSE  FL+NI+EA+ AV  WR LL+R
Sbjct: 7   VTRGRAVVERWCILAEQRLEYLTELFETGRWRRYHSELDFLDNIQEAKLAVQTWRGLLTR 66

Query: 61  EASLDNSPIDLSWLGRGRSKLPPRDISPVPERRSEAATLAEAAMTAVAAALETATEVLEQ 120
           EA+ +N P+DLSWLG   SKL PR  S +P   SEA     A     A         +E+
Sbjct: 67  EATANNQPVDLSWLGVN-SKLKPRQ-SVLP---SEAPATWTAPRHPAAVQYTAPVAPVER 121

Query: 121 PLTVADAPPLEMPPPAVRPPVLDLDTIQRRYPLLRNAL 158
              VA A   +   P      LDL  +Q+RYPLLR AL
Sbjct: 122 TEPVAAAADEDAAEPVSWERQLDLVVMQQRYPLLRPAL 159


>ref|YP_004110002.1| hypothetical protein Rpdx1_3702 [Rhodopseudomonas palustris DX-1]
 gb|ADU45269.1| hypothetical protein Rpdx1_3702 [Rhodopseudomonas palustris DX-1]
          Length = 172

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 3  RGQEIVARWCNLAEQRLEHLTELFETGRWRRYHSEQAFLENIREARAAVDIWRELLSREA 62
          RG+ +V RWC LAEQRL++LTELFETGRWRR+  E+ FLEN++EA+AAV+ WR LL REA
Sbjct: 8  RGRALVERWCLLAEQRLDYLTELFETGRWRRFFGEREFLENVQEAKAAVESWRGLLKREA 67

Query: 63 SLDNSPIDLSWLGRGRSKLPPR 84
          +LDN P+DLSWLGR + K+PPR
Sbjct: 68 TLDNRPVDLSWLGRNK-KVPPR 88


>ref|YP_001991022.1| hypothetical protein Rpal_2024 [Rhodopseudomonas palustris TIE-1]
 gb|ACF00547.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 172

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 68/82 (82%), Gaps = 1/82 (1%)

Query: 3  RGQEIVARWCNLAEQRLEHLTELFETGRWRRYHSEQAFLENIREARAAVDIWRELLSREA 62
          RG+ +V RWC LAEQRL++LTELFETGRWRR+  E  FLEN++EA+AAV+ WR LL REA
Sbjct: 8  RGRALVQRWCLLAEQRLDYLTELFETGRWRRFFGELEFLENVQEAKAAVESWRGLLQREA 67

Query: 63 SLDNSPIDLSWLGRGRSKLPPR 84
          +LDN P+DLSWLG  + K+PPR
Sbjct: 68 TLDNRPVDLSWLGHNK-KVPPR 88