BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0007.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769686.1| hypothetical protein bll3046 [Bradyrhizobium ja... 696 0.0 ref|YP_780771.1| hypothetical protein RPE_1843 [Rhodopseudomonas... 668 0.0 ref|YP_531626.1| twin-arginine translocation pathway signal [Rho... 658 0.0 ref|YP_577887.1| nitrous oxidase accessory protein [Nitrobacter ... 651 0.0 ref|YP_318849.1| nitrous oxidase accessory protein [Nitrobacter ... 651 0.0 >ref|NP_769686.1| hypothetical protein bll3046 [Bradyrhizobium japonicum USDA 110] dbj|BAC48311.1| bll3046 [Bradyrhizobium japonicum USDA 110] Length = 456 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/456 (77%), Positives = 395/456 (86%), Gaps = 2/456 (0%) Query: 1 MDVNRRHLIGATAAG--ALAMSPDAARAAAPSTGSLGRDVTQYGVRPGSPDDQTRNLQRA 58 MD+NRRHLIGA+ AG P A AAP T LGRD TQYGVRPGS +DQTR LQRA Sbjct: 1 MDLNRRHLIGASTAGIAGALAMPADAARAAPLTSLLGRDATQYGVRPGSSEDQTRGLQRA 60 Query: 59 IDDAARAQVPLAFPPGVYRTGLLRLAPGSQLIGVRGASRLVFNGGASLLEGEGVGGIVLM 118 ID+AARAQ+PLA PPGVYR+GLLRL G+QLIGVRGA++ VF GG S ++ +G I L Sbjct: 61 IDEAARAQMPLALPPGVYRSGLLRLPNGTQLIGVRGATKFVFTGGPSAIQSDGADAIGLS 120 Query: 119 GLTFDGGNIPLPNRRGLVHCLSGRDIRITDCRFTGSGGNGIWFEQMSGDVSNNVFTDIAT 178 G+TFDGG IPLP RRGL+H L GRD+RITDC TGSGG+GIW EQ+SGD+S N+FT IA Sbjct: 121 GITFDGGGIPLPTRRGLIHVLGGRDVRITDCEITGSGGSGIWLEQISGDISGNIFTSIAV 180 Query: 179 TALVSFDALGLMVSRNTIKGTNDNGIEILRTAIGDDGSIVADNRIEDIKAGPGGSGQYGN 238 TA+VSFDA GL V+RNTI GTNDNGIEILR+AIGDDG++VADNRIEDIKAGPGGSGQYGN Sbjct: 181 TAVVSFDAKGLSVARNTIIGTNDNGIEILRSAIGDDGTLVADNRIEDIKAGPGGSGQYGN 240 Query: 239 AINAFRAGNVIVRGNRIKNCVFFFXRGNSASNIHITDNSVSNVREVALYSEFSFEAAVIA 298 AINAFRAGNVIVRGNRIKNC + RGNSASNIHIT NSVS+VREVALYSEF+FEAAVIA Sbjct: 241 AINAFRAGNVIVRGNRIKNCDYSAVRGNSASNIHITGNSVSDVREVALYSEFAFEAAVIA 300 Query: 299 NNTVDGAAIGVSVCNFNEGGRIAVVQGNIIRNLLPKRPAGTDPNDGAGIGIYVEADSTVT 358 NN VDGAA+GVSVCNFNEGGRIAVVQGNIIRNL+PKRP GT P+D AG+GIY+EAD++VT Sbjct: 301 NNIVDGAAVGVSVCNFNEGGRIAVVQGNIIRNLIPKRPIGTAPDDDAGVGIYIEADTSVT 360 Query: 359 GNVIENAPTFGIVAGWGKYLRDVAISGNVVRNAFVGIGVSVVPGAGTALINNNMISETPR 418 GNVIEN P++GIVAGWGKYLRDVAI+GNV+R A GIGVSVVPGAGTAL+NNNMISETPR Sbjct: 361 GNVIENVPSYGIVAGWGKYLRDVAITGNVIRKALAGIGVSVVPGAGTALVNNNMISETPR 420 Query: 419 GAVVGLDHARPVTPDLSAGGAQQYAQLVVGANAVRR 454 GAVVGLDHAR VT DLSA GAQ++AQ+VVG NAVRR Sbjct: 421 GAVVGLDHARAVTADLSADGAQRFAQVVVGGNAVRR 456 >ref|YP_780771.1| hypothetical protein RPE_1843 [Rhodopseudomonas palustris BisA53] gb|ABJ05791.1| hypothetical protein RPE_1843 [Rhodopseudomonas palustris BisA53] Length = 454 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/433 (75%), Positives = 373/433 (86%) Query: 21 PDAARAAAPSTGSLGRDVTQYGVRPGSPDDQTRNLQRAIDDAARAQVPLAFPPGVYRTGL 80 P AAP SLGRDVT +GV+P SPDDQTR LQRAIDDAA+AQ PLA PPG+YR GL Sbjct: 22 PSEIARAAPLPASLGRDVTHFGVKPNSPDDQTRALQRAIDDAAKAQAPLALPPGIYRCGL 81 Query: 81 LRLAPGSQLIGVRGASRLVFNGGASLLEGEGVGGIVLMGLTFDGGNIPLPNRRGLVHCLS 140 L L GSQLIGVRGA+RL FNGG SL+E G GI L G+ FDGGNI LPNRRGLVHCL Sbjct: 82 LTLPAGSQLIGVRGATRLAFNGGLSLIESRGADGITLSGIDFDGGNIKLPNRRGLVHCLQ 141 Query: 141 GRDIRITDCRFTGSGGNGIWFEQMSGDVSNNVFTDIATTALVSFDALGLMVSRNTIKGTN 200 GR++RITDCR SGG+GIW EQ++G +S+N +IA T +VSFDA GL+V+RN+I GTN Sbjct: 142 GRELRITDCRILDSGGSGIWLEQIAGSISDNALANIAVTGIVSFDARGLIVARNSILGTN 201 Query: 201 DNGIEILRTAIGDDGSIVADNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIKNCVF 260 DNGIEILR++IGDDG+ V DNRIEDIKAGPGGSGQYGNAINAFRAGNVI+RGNRIKNC + Sbjct: 202 DNGIEILRSSIGDDGTQVIDNRIEDIKAGPGGSGQYGNAINAFRAGNVIIRGNRIKNCDY 261 Query: 261 FFXRGNSASNIHITDNSVSNVREVALYSEFSFEAAVIANNTVDGAAIGVSVCNFNEGGRI 320 RGNSASNIHITDN+VS VREVALYSEFSFE AVIANN+VDGAA+GVSVCNFNEGGR+ Sbjct: 262 SAVRGNSASNIHITDNAVSGVREVALYSEFSFEGAVIANNSVDGAAVGVSVCNFNEGGRL 321 Query: 321 AVVQGNIIRNLLPKRPAGTDPNDGAGIGIYVEADSTVTGNVIENAPTFGIVAGWGKYLRD 380 +VVQGNIIRNLLPKRP GT P+D AGIGIYVEAD+ VTGNVIENAP FGIVAGWGKYLRD Sbjct: 322 SVVQGNIIRNLLPKRPIGTAPDDDAGIGIYVEADTAVTGNVIENAPAFGIVAGWGKYLRD 381 Query: 381 VAISGNVVRNAFVGIGVSVVPGAGTALINNNMISETPRGAVVGLDHARPVTPDLSAGGAQ 440 VAISGNV+RNAFVGIGVSV GAGTAL++NN+++ETPRGAVVGLDHA+PVTPDL+A GA Sbjct: 382 VAISGNVIRNAFVGIGVSVASGAGTALVSNNVLAETPRGAVVGLDHAKPVTPDLTAAGAA 441 Query: 441 QYAQLVVGANAVR 453 +++Q+V+G N R Sbjct: 442 RFSQVVLGTNQSR 454 >ref|YP_531626.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] gb|ABD87307.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 454 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/454 (74%), Positives = 385/454 (84%), Gaps = 1/454 (0%) Query: 1 MDVNRRHLIGATAAGALAMS-PDAARAAAPSTGSLGRDVTQYGVRPGSPDDQTRNLQRAI 59 M ++RRHL+ A A A A++ P AAP T SLGRD +QYGVRP SPDDQTR LQRAI Sbjct: 1 MPLSRRHLLNAAAFAAGALALPSKPARAAPLTSSLGRDASQYGVRPNSPDDQTRALQRAI 60 Query: 60 DDAARAQVPLAFPPGVYRTGLLRLAPGSQLIGVRGASRLVFNGGASLLEGEGVGGIVLMG 119 DDAARAQ PLA PPGVYRTG L L G+QLIGVRGA+RL+FNGG SLLE +G + L G Sbjct: 61 DDAARAQTPLALPPGVYRTGPLMLPNGAQLIGVRGATRLLFNGGRSLLESQGGNAVELSG 120 Query: 120 LTFDGGNIPLPNRRGLVHCLSGRDIRITDCRFTGSGGNGIWFEQMSGDVSNNVFTDIATT 179 LT DG I LP RRGLVHC GR++RIT C SGGNGIW + ++GD+S+N F++IATT Sbjct: 121 LTLDGAQIKLPQRRGLVHCQQGRELRITQCTIANSGGNGIWLDNIAGDISDNGFSNIATT 180 Query: 180 ALVSFDALGLMVSRNTIKGTNDNGIEILRTAIGDDGSIVADNRIEDIKAGPGGSGQYGNA 239 +VSFDA GL+V+RN+I GTNDNGIEILR+A+GDDG+ V DNRIEDIKAGPGGSGQYGNA Sbjct: 181 GIVSFDAQGLIVARNSILGTNDNGIEILRSALGDDGTQVLDNRIEDIKAGPGGSGQYGNA 240 Query: 240 INAFRAGNVIVRGNRIKNCVFFFXRGNSASNIHITDNSVSNVREVALYSEFSFEAAVIAN 299 INAFRAGNV+VRGNRIKNC + RGNSASNI IT NSVSNVREVALYSEF+FE AVIAN Sbjct: 241 INAFRAGNVVVRGNRIKNCDYSAVRGNSASNIQITGNSVSNVREVALYSEFAFEGAVIAN 300 Query: 300 NTVDGAAIGVSVCNFNEGGRIAVVQGNIIRNLLPKRPAGTDPNDGAGIGIYVEADSTVTG 359 NTV+GAA+GVSVCNFNEGGR++VVQGN+IRNL PKRP GT P+D AGIGIYVEAD+ VTG Sbjct: 301 NTVNGAAVGVSVCNFNEGGRLSVVQGNLIRNLTPKRPIGTAPDDDAGIGIYVEADTAVTG 360 Query: 360 NVIENAPTFGIVAGWGKYLRDVAISGNVVRNAFVGIGVSVVPGAGTALINNNMISETPRG 419 NV+ENAP+FGIVAGWG+YLRDVAISGNV+RNAFVGIGVSV GAGTAL+ NN+ISETPRG Sbjct: 361 NVVENAPSFGIVAGWGRYLRDVAISGNVIRNAFVGIGVSVADGAGTALVGNNVISETPRG 420 Query: 420 AVVGLDHARPVTPDLSAGGAQQYAQLVVGANAVR 453 AVVGLDHARPVTPDL+A GA ++AQ+V+G NA R Sbjct: 421 AVVGLDHARPVTPDLAAPGAAKFAQVVMGINAAR 454 >ref|YP_577887.1| nitrous oxidase accessory protein [Nitrobacter hamburgensis X14] gb|ABE63427.1| nitrous oxidase accessory protein [Nitrobacter hamburgensis X14] Length = 455 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/455 (73%), Positives = 378/455 (83%), Gaps = 2/455 (0%) Query: 1 MDVNRRHLIGATAAGALAMS--PDAARAAAPSTGSLGRDVTQYGVRPGSPDDQTRNLQRA 58 MD+ RRH++GA+AAG P A AAP T +LGRD T YGVRP SPDDQTR LQRA Sbjct: 1 MDIRRRHILGASAAGVAGALAMPSGAARAAPLTSTLGRDATHYGVRPNSPDDQTRALQRA 60 Query: 59 IDDAARAQVPLAFPPGVYRTGLLRLAPGSQLIGVRGASRLVFNGGASLLEGEGVGGIVLM 118 ID+AARA PLA PPGVYRTG L+L GSQLIGVRGA+ L+F+GGASLL EG I L Sbjct: 61 IDEAARANAPLALPPGVYRTGALQLTKGSQLIGVRGATTLMFSGGASLLSTEGADHIGLS 120 Query: 119 GLTFDGGNIPLPNRRGLVHCLSGRDIRITDCRFTGSGGNGIWFEQMSGDVSNNVFTDIAT 178 LT DGG IPLP RRGL+HC GRD+RI DC TGSG +GI E ++G++S NV A+ Sbjct: 121 NLTLDGGGIPLPERRGLIHCRGGRDVRILDCEITGSGRDGIRLENVAGEISGNVIVQTAS 180 Query: 179 TALVSFDALGLMVSRNTIKGTNDNGIEILRTAIGDDGSIVADNRIEDIKAGPGGSGQYGN 238 TA+VSFDALGL V+RNTI +DNGIEILRTAIGDDGSIV NRIE IKAGPGGSGQYGN Sbjct: 181 TAIVSFDALGLTVARNTILDASDNGIEILRTAIGDDGSIVTGNRIEHIKAGPGGSGQYGN 240 Query: 239 AINAFRAGNVIVRGNRIKNCVFFFXRGNSASNIHITDNSVSNVREVALYSEFSFEAAVIA 298 AINAFRAGNVI+ GNRI +C + RGNSASNI IT NSVS VREVALYSEF+FE AVIA Sbjct: 241 AINAFRAGNVIISGNRISDCDYSAVRGNSASNIQITGNSVSGVREVALYSEFAFEGAVIA 300 Query: 299 NNTVDGAAIGVSVCNFNEGGRIAVVQGNIIRNLLPKRPAGTDPNDGAGIGIYVEADSTVT 358 NNTVDGAA+GVSVCNFNEGGRIAVVQGNIIRNLLPKRP GT P+D AGIGIYVEAD+ VT Sbjct: 301 NNTVDGAAVGVSVCNFNEGGRIAVVQGNIIRNLLPKRPIGTAPDDDAGIGIYVEADTAVT 360 Query: 359 GNVIENAPTFGIVAGWGKYLRDVAISGNVVRNAFVGIGVSVVPGAGTALINNNMISETPR 418 GNVIENAP+FG++AGWGKYLRDVAI+GNV+R +F+GIGVSVV GAGTAL+N N+IS+TPR Sbjct: 361 GNVIENAPSFGMIAGWGKYLRDVAITGNVIRKSFIGIGVSVVDGAGTALVNTNVISDTPR 420 Query: 419 GAVVGLDHARPVTPDLSAGGAQQYAQLVVGANAVR 453 GAVVGLDHA+PVTPDL+A GA +YAQ+ +GANAVR Sbjct: 421 GAVVGLDHAKPVTPDLAAHGAAKYAQVAIGANAVR 455 >ref|YP_318849.1| nitrous oxidase accessory protein [Nitrobacter winogradskyi Nb-255] gb|ABA05497.1| Nitrous oxidase accessory protein [Nitrobacter winogradskyi Nb-255] Length = 455 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/456 (72%), Positives = 378/456 (82%), Gaps = 4/456 (0%) Query: 1 MDVNRRHLIGATAAG---ALAMSPDAARAAAPSTGSLGRDVTQYGVRPGSPDDQTRNLQR 57 MD++RRH++GA+AAG A AM +A RAA P T +LGRD YGVRP + DQTR LQR Sbjct: 1 MDIDRRHILGASAAGIIGAQAMPANAVRAA-PLTSTLGRDAAHYGVRPNATGDQTRALQR 59 Query: 58 AIDDAARAQVPLAFPPGVYRTGLLRLAPGSQLIGVRGASRLVFNGGASLLEGEGVGGIVL 117 AI++AARA PLA PGVYRTG L LA GSQL+GVRGA+ L F GGASLL EG I L Sbjct: 60 AINEAARANAPLALSPGVYRTGPLLLAKGSQLVGVRGATTLAFTGGASLLAAEGADHIGL 119 Query: 118 MGLTFDGGNIPLPNRRGLVHCLSGRDIRITDCRFTGSGGNGIWFEQMSGDVSNNVFTDIA 177 LT DGG +PLP+RRGLVHCL GRD+RI DC TGSGGNGIW E +G++S N+ I Sbjct: 120 SDLTLDGGGVPLPDRRGLVHCLGGRDVRIMDCAITGSGGNGIWLENAAGEISGNLIEKIE 179 Query: 178 TTALVSFDALGLMVSRNTIKGTNDNGIEILRTAIGDDGSIVADNRIEDIKAGPGGSGQYG 237 TT +VSFDALGL ++RNTI+ T DNGIEILRTAIGDDGSIV NRIE+IKAG GGSGQ+G Sbjct: 180 TTGIVSFDALGLTIARNTIRQTRDNGIEILRTAIGDDGSIVTGNRIENIKAGQGGSGQHG 239 Query: 238 NAINAFRAGNVIVRGNRIKNCVFFFXRGNSASNIHITDNSVSNVREVALYSEFSFEAAVI 297 NAINAFRAGNVIV GNRI +C + RGNSASNI IT NS+SNVREVALYSEF+FE AVI Sbjct: 240 NAINAFRAGNVIVSGNRISDCDYSAVRGNSASNIQITGNSISNVREVALYSEFAFEGAVI 299 Query: 298 ANNTVDGAAIGVSVCNFNEGGRIAVVQGNIIRNLLPKRPAGTDPNDGAGIGIYVEADSTV 357 A NTVDGAA+GVSV NFN+GGR+AVVQGNIIRNLLPKRP GT P+D AGIGIY+EAD++V Sbjct: 300 AGNTVDGAAVGVSVSNFNKGGRLAVVQGNIIRNLLPKRPIGTAPDDDAGIGIYIEADTSV 359 Query: 358 TGNVIENAPTFGIVAGWGKYLRDVAISGNVVRNAFVGIGVSVVPGAGTALINNNMISETP 417 TGN+IENAP+FGI+AGWGKYLRDVAI+GNV+R F+GIGVSVV GAGTAL+N N+IS+ P Sbjct: 360 TGNLIENAPSFGIIAGWGKYLRDVAITGNVIRKTFIGIGVSVVDGAGTALVNTNVISDAP 419 Query: 418 RGAVVGLDHARPVTPDLSAGGAQQYAQLVVGANAVR 453 RGAVVGLDHARPVTPDLSA GA ++ Q+V+GANAVR Sbjct: 420 RGAVVGLDHARPVTPDLSAAGAAKFTQIVIGANAVR 455