BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0004.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239047.1| hypothetical protein BBta_3020 [Bradyrhizobi... 358 6e-97 ref|NP_769692.1| hypothetical protein bll3052 [Bradyrhizobium ja... 349 2e-94 ref|YP_001204731.1| hypothetical protein BRADO2678 [Bradyrhizobi... 321 7e-86 ref|YP_531633.1| hypothetical protein RPC_1755 [Rhodopseudomonas... 309 4e-82 ref|ZP_07026672.1| conserved hypothetical protein [Afipia sp. 1N... 306 3e-81 >ref|YP_001239047.1| hypothetical protein BBta_3020 [Bradyrhizobium sp. BTAi1] gb|ABQ35141.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 258 Score = 358 bits (918), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 182/257 (70%), Positives = 204/257 (79%), Gaps = 3/257 (1%) Query: 8 TPVRIMGLAGVLAFLWLPARAADPKPDATIKNASIEASVYLDDKIKADAALAADCLAEGR 67 T + I L G+LA PA AAD KPDATI ++EA+V LD IKAD LAA CLAEG+ Sbjct: 4 TSICIAALLGLLAVS--PALAADRKPDATINTKAVEANVTLDAPIKADGPLAAYCLAEGK 61 Query: 68 KWIDKNAAEAASARKNEPELFRDRGGYSFERKYSERSVVDGRYVSVLRDDYMDTHGAHPN 127 KWID+NAA+AA RK +P+LFRDR +SFER+YS RSVV RYVSV+RDDYMDT GAHPN Sbjct: 62 KWIDRNAADAAKERKADPQLFRDRK-WSFERRYSLRSVVADRYVSVVRDDYMDTGGAHPN 120 Query: 128 SDVNTILWDAAEKKRISIRPFFTETADNGPTLTAMRKAVIAALNTEKKRRGAGETATTEW 187 SDVNTILWD + K ISIRPFFTETADNG T+ AM AVI +L EK +R AGETAT EW Sbjct: 121 SDVNTILWDKSAAKPISIRPFFTETADNGATMKAMLAAVITSLKAEKTKRDAGETATAEW 180 Query: 188 YKELKPTLLKIGAVTLAPSTVSGKSSGLTFHYPPYAVGPYAEGQYVVFVPWETLKPYLTA 247 +K L+P LLKIGAVTLAPST +GKSSGLTFHYPPYAVGPYAEGQYV FVPWETLKPYL+ Sbjct: 181 FKGLEPALLKIGAVTLAPSTETGKSSGLTFHYPPYAVGPYAEGQYVAFVPWETLKPYLSP 240 Query: 248 EGANIFGGARPKADTDD 264 EG IFGG RPK D +D Sbjct: 241 EGQAIFGGVRPKGDAED 257 >ref|NP_769692.1| hypothetical protein bll3052 [Bradyrhizobium japonicum USDA 110] dbj|BAC48317.1| bll3052 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 187/258 (72%), Positives = 216/258 (83%), Gaps = 4/258 (1%) Query: 12 IMGLAGVLAF---LWLPARAADPKPDATIKNASIEASVYLDDKIKADAALAADCLAEGRK 68 ++GL+ +A + A AADPKPDA +K SIEA V+LDD+IKADAALAADCLAEGRK Sbjct: 1 MIGLSVAMALGATCVISAFAADPKPDAIVKTKSIEARVFLDDRIKADAALAADCLAEGRK 60 Query: 69 WIDKNAAEAASARKNEPELFRDRGGYSFERKYSERSVVDGRYVSVLRDDYMDTHGAHPNS 128 W+DKNAAEAA+ARK +P+ F+D GG+ FERKY+ RSVV RY S+LR+DYMDTHGAHPNS Sbjct: 61 WLDKNAAEAAAARKEDPQFFKD-GGWDFERKYAIRSVVADRYASILRNDYMDTHGAHPNS 119 Query: 129 DVNTILWDAAEKKRISIRPFFTETADNGPTLTAMRKAVIAALNTEKKRRGAGETATTEWY 188 DVNTILWD E+KRISIRPFF ETAD GPT+ AM KAVIA+L EKK+R ETAT EW+ Sbjct: 120 DVNTILWDKTERKRISIRPFFNETADGGPTMKAMLKAVIASLKAEKKKRDTSETATDEWF 179 Query: 189 KELKPTLLKIGAVTLAPSTVSGKSSGLTFHYPPYAVGPYAEGQYVVFVPWETLKPYLTAE 248 K ++P+LLKIGAVTLAPST +GKSSGLTFHYPPYAVGPYAEG+YV FVPWETLKPYLTAE Sbjct: 180 KSVEPSLLKIGAVTLAPSTEAGKSSGLTFHYPPYAVGPYAEGEYVAFVPWETLKPYLTAE 239 Query: 249 GANIFGGARPKADTDDRQ 266 G IFGGARPK D ++ Q Sbjct: 240 GTRIFGGARPKGDAEEPQ 257 >ref|YP_001204731.1| hypothetical protein BRADO2678 [Bradyrhizobium sp. ORS 278] emb|CAL76494.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 254 Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 165/259 (63%), Positives = 191/259 (73%), Gaps = 10/259 (3%) Query: 6 SMTPVRIMGLAGVLAFLWLPARAADPKPDATIKNASIEASVYLDDKIKADAALAADCLAE 65 S+ ++GL GV + +PD ASV LD +IKAD LA CLA+ Sbjct: 5 SICIAAVLGLFGV---------SPTSEPDIVRMGQLFSASVTLDAQIKADPPLAGYCLAD 55 Query: 66 GRKWIDKNAAEAASARKNEPELFRDRGGYSFERKYSERSVVDGRYVSVLRDDYMDTHGAH 125 G+K +DK A+A + K +P+LFRD G + FERKYS RSVV RY+S+LRDDYMDT GAH Sbjct: 56 GQKGMDKIDADAFNEFKKDPKLFRD-GNWRFERKYSVRSVVADRYISILRDDYMDTRGAH 114 Query: 126 PNSDVNTILWDAAEKKRISIRPFFTETADNGPTLTAMRKAVIAALNTEKKRRGAGETATT 185 PNSDVNTILWD + K ISIRPFFTETADNGP + AM AVI +L +KK+R A ETAT Sbjct: 115 PNSDVNTILWDKSAAKPISIRPFFTETADNGPAMKAMLAAVITSLKAQKKKRDATETATA 174 Query: 186 EWYKELKPTLLKIGAVTLAPSTVSGKSSGLTFHYPPYAVGPYAEGQYVVFVPWETLKPYL 245 EW+K L+P LLKIGAVTLAPST +GKSSGLTFHYPPYAVGPYAEGQYV FVPWETLKPYL Sbjct: 175 EWFKGLEPKLLKIGAVTLAPSTEAGKSSGLTFHYPPYAVGPYAEGQYVAFVPWETLKPYL 234 Query: 246 TAEGANIFGGARPKADTDD 264 +AEG IFGGARPK D +D Sbjct: 235 SAEGQAIFGGARPKGDAED 253 >ref|YP_531633.1| hypothetical protein RPC_1755 [Rhodopseudomonas palustris BisB18] gb|ABD87314.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 257 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 181/239 (75%), Gaps = 1/239 (0%) Query: 25 PARAADPKPDATIKNASIEASVYLDDKIKADAALAADCLAEGRKWIDKNAAEAASARKNE 84 PA A D KPD IK SIEA+V LD IKAD ALAADCLAEG++W +K A+A RK Sbjct: 20 PAFAEDAKPDFAIKTKSIEATVLLDGPIKADPALAADCLAEGKRWAEKARADADRERKQT 79 Query: 85 PELFRDRGGYSFERKYSERSVVDGRYVSVLRDDYMDTHGAHPNSDVNTILWDAAEKKRIS 144 P++FRD G ++ ERKY RS+V RYVS++R DY+ GAHPN+DV+TILWD KRIS Sbjct: 80 PDMFRD-GAWTVERKYDVRSLVKDRYVSIVRSDYISAGGAHPNADVDTILWDKTANKRIS 138 Query: 145 IRPFFTETADNGPTLTAMRKAVIAALNTEKKRRGAGETATTEWYKELKPTLLKIGAVTLA 204 IRPFFTETAD GPT+TA+R+AV+AAL TEK++R E +W K ++P L KIGAVTLA Sbjct: 139 IRPFFTETADGGPTMTALRQAVVAALKTEKRKRDIPEVPGADWAKPIEPKLTKIGAVTLA 198 Query: 205 PSTVSGKSSGLTFHYPPYAVGPYAEGQYVVFVPWETLKPYLTAEGANIFGGARPKADTD 263 PST G SSGLTFHYPP A+GP+AEG YV FVPW+ LKPYLT EGA IFGGARP+ D D Sbjct: 199 PSTEPGNSSGLTFHYPPDAIGPHAEGDYVGFVPWDKLKPYLTPEGAAIFGGARPRGDED 257 >ref|ZP_07026672.1| conserved hypothetical protein [Afipia sp. 1NLS2] gb|EFI51515.1| conserved hypothetical protein [Afipia sp. 1NLS2] Length = 264 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 154/263 (58%), Positives = 196/263 (74%), Gaps = 5/263 (1%) Query: 7 MTPVRIMGLAGVLAFLWLP--ARAADPKPDATIKNASIEASVYLDDKIKADAALAADCLA 64 P+R + V A +WL AA+PKPD IK +++ SV LDD IK+ ALAADCLA Sbjct: 4 FAPIRNIARVAV-AGIWLTGACFAAEPKPDIAIKTDAVDVSVTLDDTIKSHPALAADCLA 62 Query: 65 EGRKWIDKNAAEAASARKNEPELFRDRGGYSFERKYSERSVVDGRYVSVLRDDYMDTHGA 124 EG+++ +K EA ++++P+ F +GGY+FER+Y SVV GRY+S+LR+DY DTHGA Sbjct: 63 EGKRYAEKQRKEATQTKRSDPKYF-PKGGYTFEREYVTASVVGGRYISILREDYADTHGA 121 Query: 125 HPNSDVNTILWDAAEKKRISIRPFFTETADNGPTLTAMRKAVIAALNTEKKRRG-AGETA 183 HPN+ V+T+LWD KKRISIRPFF ETAD+GPTLTAMR AV+AAL EKK RG A + + Sbjct: 122 HPNTYVDTLLWDDTAKKRISIRPFFKETADDGPTLTAMRNAVLAALKAEKKARGIADDES 181 Query: 184 TTEWYKELKPTLLKIGAVTLAPSTVSGKSSGLTFHYPPYAVGPYAEGQYVVFVPWETLKP 243 +WYK++ +LLKIG VTLAPST GKS+GL FHY PYAVGPYAEG++ V VPW+ LKP Sbjct: 182 PIDWYKDIGTSLLKIGPVTLAPSTEPGKSAGLAFHYAPYAVGPYAEGRFDVTVPWQELKP 241 Query: 244 YLTAEGANIFGGARPKADTDDRQ 266 YL+AEG IFGGA+P+ D +RQ Sbjct: 242 YLSAEGTAIFGGAQPQEDNINRQ 264