BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0001.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769696.1| methylmalonyl-CoA mutase small subunit [Bradyrh... 578 e-163 ref|ZP_08629241.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae b... 534 e-150 ref|YP_569065.1| methylmalonyl-CoA mutase [Rhodopseudomonas palu... 524 e-146 ref|YP_780782.1| methylmalonyl-CoA mutase [Rhodopseudomonas palu... 523 e-146 ref|YP_577877.1| methylmalonyl-CoA mutase [Nitrobacter hamburgen... 520 e-145 >ref|NP_769696.1| methylmalonyl-CoA mutase small subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC48321.1| mutA [Bradyrhizobium japonicum USDA 110] Length = 623 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 301/397 (75%), Positives = 332/397 (83%), Gaps = 4/397 (1%) Query: 1 VQELAFTLALGLAYLRMLEGAGIDLDAARAGISFRLTADADQFLTMAKFRALRLLWARVE 60 VQELAF LA G+AYLR +EGAG+ L+AA+ + RL ADADQFLTMAKFRALRLLWAR+E Sbjct: 226 VQELAFVLACGVAYLRAIEGAGVPLEAAQGMVYARLAADADQFLTMAKFRALRLLWARIE 285 Query: 61 QACGLTPKPIFVNAQTAWRMLTQRDPNVNMLRATIATFAAGLGGANAITVLPHTLALGLP 120 ACGLTPKP+F+ A TAWRMLTQRDP VNMLRAT+ATFAAGL GANAITVLPHTLALGLP Sbjct: 286 TACGLTPKPLFIAADTAWRMLTQRDPYVNMLRATMATFAAGLAGANAITVLPHTLALGLP 345 Query: 121 DDFARRIARNTQLVLLDESNLAKVSDPAAGAGGIETLTSQLCEAAWTLFQEIEKAGGVFA 180 D FARR+ARNTQL+LL+ESNLAKVSDPAAGAGGIETLT+QLCEAAW LFQE EKAGG FA Sbjct: 346 DPFARRVARNTQLLLLEESNLAKVSDPAAGAGGIETLTAQLCEAAWALFQESEKAGGAFA 405 Query: 181 ALERGLLQNKVAATRSLRETNVAKRRDVLTGASEFPDLREAVPAVLDVKPSAPVSVADAK 240 AL++ L Q+KVAA R R+ N+AKRRDVLTGASEFP+L E AVL P A + K Sbjct: 406 ALQQALFQSKVAAARKARDANIAKRRDVLTGASEFPNLHERETAVLKATPVALAPYGEQK 465 Query: 241 VKFDALAPIRLPPP----XDKSDAALKAHGARPKIFLANLGTAADFTARATFAKSFFETG 296 KFDAL PIRL P DKSDAALKA GARPK+FLANLGT ADFTARATFAKSFFE G Sbjct: 466 YKFDALPPIRLSEPFEALRDKSDAALKARGARPKVFLANLGTPADFTARATFAKSFFEAG 525 Query: 297 GIEAIDSEGFADAAVLAAAFKASGATMACICSSDKVYAVSAAEAARALQGAGARHIYLAG 356 GI+AIDSEGFAD A L AAF+ASGA +AC+CSSDKVYA A AA+ALQ AG RHIYLAG Sbjct: 526 GIQAIDSEGFADPAKLVAAFRASGAELACLCSSDKVYAEHAEAAAKALQTAGTRHIYLAG 585 Query: 357 RPADQEASLRAAGIGEFVFAGGDALATLREAYRRMEQ 393 RP + EA LRAAG+ FVFAGGDALATL++AYRRMEQ Sbjct: 586 RPTEAEAGLRAAGVTGFVFAGGDALATLQDAYRRMEQ 622 >ref|ZP_08629241.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07734.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae bacterium SG-6C] Length = 620 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 278/392 (70%), Positives = 323/392 (82%), Gaps = 4/392 (1%) Query: 2 QELAFTLALGLAYLRMLEGAGIDLDAARAGISFRLTADADQFLTMAKFRALRLLWARVEQ 61 QELA+ LA+G+AYLR LE AGI L+ AR I RL+ADADQFLTMAKFRALRLLWAR+EQ Sbjct: 227 QELAYVLAVGVAYLRALEDAGIPLENARRMIYARLSADADQFLTMAKFRALRLLWARIEQ 286 Query: 62 ACGLTPKPIFVNAQTAWRMLTQRDPNVNMLRATIATFAAGLGGANAITVLPHTLALGLPD 121 +CGLTP+P+FV A+T+WRMLTQRDP+VNMLRATIA F+AGLGGAN+++VLPHTLALGLPD Sbjct: 287 SCGLTPEPLFVVAETSWRMLTQRDPDVNMLRATIAAFSAGLGGANSVSVLPHTLALGLPD 346 Query: 122 DFARRIARNTQLVLLDESNLAKVSDPAAGAGGIETLTSQLCEAAWTLFQEIEKAGGVFAA 181 FARRIARNTQLVLL+ESNL KVSDPAAG+GGIE LT QLCEAAW LFQEIEKAGG FAA Sbjct: 347 AFARRIARNTQLVLLEESNLDKVSDPAAGSGGIEALTKQLCEAAWLLFQEIEKAGGAFAA 406 Query: 182 LERGLLQNKVAATRSLRETNVAKRRDVLTGASEFPDLREAVPAVLDVKPSAPVSVADAKV 241 LE+ ++Q KVAA R+ R+TN+A+R+DVLTGASEFP+L E PAVLD KP+A + + Sbjct: 407 LEKNIIQPKVAAVRAARDTNIARRKDVLTGASEFPNLNEKKPAVLDAKPAALPWTDEVVL 466 Query: 242 KFDALAPIRLPPP----XDKSDAALKAHGARPKIFLANLGTAADFTARATFAKSFFETGG 297 FDALAPIRL P D+SDA L G RP +FLANLGT ADFTARATF KSFFETGG Sbjct: 467 TFDALAPIRLAAPFEELRDRSDAMLAKSGKRPSVFLANLGTPADFTARATFTKSFFETGG 526 Query: 298 IEAIDSEGFADAAVLAAAFKASGATMACICSSDKVYAVSAAEAARALQGAGARHIYLAGR 357 IEA+ ++GF+D A LAAAFKASGA + C+CSSDKVY A AA+AL AGA+HIYLAGR Sbjct: 527 IEALGNDGFSDPATLAAAFKASGAKLVCLCSSDKVYGAQAVAAAQALHAAGAKHIYLAGR 586 Query: 358 PADQEASLRAAGIGEFVFAGGDALATLREAYR 389 P D E +L AG+ F+ AGGDALATL+ AY+ Sbjct: 587 PGDLEPALCEAGVTGFIAAGGDALATLKAAYQ 618 >ref|YP_569065.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB5] gb|ABE39164.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB5] Length = 623 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 271/395 (68%), Positives = 320/395 (81%), Gaps = 4/395 (1%) Query: 2 QELAFTLALGLAYLRMLEGAGIDLDAARAGISFRLTADADQFLTMAKFRALRLLWARVEQ 61 QELA+ LA G+AYLR L+ AG+ LD AR+ I R ADADQFLT+ KFRALRLLWAR+EQ Sbjct: 227 QELAYVLAAGVAYLRALDSAGVPLDQARSMIYARFAADADQFLTLTKFRALRLLWARIEQ 286 Query: 62 ACGLTPKPIFVNAQTAWRMLTQRDPNVNMLRATIATFAAGLGGANAITVLPHTLALGLPD 121 +CGL PKP+FV A+TAWRMLTQRDP+VNMLRAT+ATF+A LGGAN++ VLPHTLA+GLPD Sbjct: 287 SCGLAPKPLFVAAETAWRMLTQRDPSVNMLRATVATFSAALGGANSVLVLPHTLAIGLPD 346 Query: 122 DFARRIARNTQLVLLDESNLAKVSDPAAGAGGIETLTSQLCEAAWTLFQEIEKAGGVFAA 181 FARR+ARNTQL+L +ESNL KV+DPAAG+GGIE LT +LC+AAW FQEIE AGG FAA Sbjct: 347 AFARRVARNTQLILREESNLDKVADPAAGSGGIEALTRELCDAAWLQFQEIENAGGAFAA 406 Query: 182 LERGLLQNKVAATRSLRETNVAKRRDVLTGASEFPDLREAVPAVLDVKPSAPVSVADAKV 241 L +Q KVAATR+ R+ N+ KRRDVLTGASEFP+L EA VLD KP A S ++AK+ Sbjct: 407 LSGNAIQPKVAATRAARDKNIGKRRDVLTGASEFPNLHEARATVLDAKPVAAPSDSEAKI 466 Query: 242 KFDALAPIRLPPP----XDKSDAALKAHGARPKIFLANLGTAADFTARATFAKSFFETGG 297 F+ALAPIR+ P DKSDA L A ARPK+FL NLG+AADFTARATFAKSFFETGG Sbjct: 467 SFEALAPIRIAKPFETLRDKSDARLAAKSARPKVFLGNLGSAADFTARATFAKSFFETGG 526 Query: 298 IEAIDSEGFADAAVLAAAFKASGATMACICSSDKVYAVSAAEAARALQGAGARHIYLAGR 357 IEAIDS+GF D LA AFKASGA+ AC+CSSDK YA AA AA+AL+ AG IYLAGR Sbjct: 527 IEAIDSDGFTDPQALAEAFKASGASFACLCSSDKAYAAHAAPAAQALRDAGCARIYLAGR 586 Query: 358 PADQEASLRAAGIGEFVFAGGDALATLREAYRRME 392 P +QEASLR AG+ +F+FAG +ALA L +A++R+E Sbjct: 587 PGEQEASLRDAGVQDFIFAGSEALAMLNDAWQRIE 621 >ref|YP_780782.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisA53] gb|ABJ05802.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisA53] Length = 623 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/396 (71%), Positives = 324/396 (81%), Gaps = 4/396 (1%) Query: 1 VQELAFTLALGLAYLRMLEGAGIDLDAARAGISFRLTADADQFLTMAKFRALRLLWARVE 60 VQELA+ LA LAYLR LE AGI LD ARA + RL+ADADQFLT+AKFRALRLLWARVE Sbjct: 226 VQELAYVLATALAYLRALEQAGIALDDARAMVYARLSADADQFLTLAKFRALRLLWARVE 285 Query: 61 QACGLTPKPIFVNAQTAWRMLTQRDPNVNMLRATIATFAAGLGGANAITVLPHTLALGLP 120 ++CGLTPKP+F+ A+TAWRM TQRDP+VNMLRATIATFAAGLGGANAI VLPHT A GLP Sbjct: 286 ESCGLTPKPLFIAAETAWRMQTQRDPSVNMLRATIATFAAGLGGANAIGVLPHTSAQGLP 345 Query: 121 DDFARRIARNTQLVLLDESNLAKVSDPAAGAGGIETLTSQLCEAAWTLFQEIEKAGGVFA 180 D FARR+ARNTQLVLL+ESNLAKV+DPAAGAGGIE LTS+LC+AAW FQ IE+AGG+F Sbjct: 346 DAFARRVARNTQLVLLEESNLAKVADPAAGAGGIEALTSELCDAAWAQFQAIEQAGGIFF 405 Query: 181 ALERGLLQNKVAATRSLRETNVAKRRDVLTGASEFPDLREAVPAVLDVKPSAPVSVADAK 240 AL L+Q KVAATR+ R+ VAKRRDVLTGASEFP+L E +VL VKP+ P K Sbjct: 406 ALGENLIQPKVAATRAARQAAVAKRRDVLTGASEFPNLHEERASVLKVKPTEPAPYGKPK 465 Query: 241 VKFDALAPIRLPPP----XDKSDAALKAHGARPKIFLANLGTAADFTARATFAKSFFETG 296 + F+ LAPIRL P +KSD L +GARPK+FLANLGT ADFTARATFAKSFFETG Sbjct: 466 ISFNPLAPIRLAVPFEALRNKSDHLLARNGARPKVFLANLGTPADFTARATFAKSFFETG 525 Query: 297 GIEAIDSEGFADAAVLAAAFKASGATMACICSSDKVYAVSAAEAARALQGAGARHIYLAG 356 GIEAID+EGFAD A LA AF ASGA + C+CSSDK+YA AA+AA+AL AGA+HIYLAG Sbjct: 526 GIEAIDTEGFADPAALAGAFTASGAALVCLCSSDKLYATQAADAAKALHNAGAKHIYLAG 585 Query: 357 RPADQEASLRAAGIGEFVFAGGDALATLREAYRRME 392 RP +QEAS R AG+ EFVFAGGDAL L +A++ +E Sbjct: 586 RPGEQEASYREAGVQEFVFAGGDALKMLEQAWQNIE 621 >ref|YP_577877.1| methylmalonyl-CoA mutase [Nitrobacter hamburgensis X14] gb|ABE63417.1| heterodimeric methylmalonyl-CoA mutase small subunit [Nitrobacter hamburgensis X14] Length = 629 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/398 (70%), Positives = 320/398 (80%), Gaps = 6/398 (1%) Query: 2 QELAFTLALGLAYLRMLEGAGIDLDAARAGISFRLTADADQFLTMAKFRALRLLWARVEQ 61 QELAF LA +AYLR LE AG L+ AR I RL+ADADQFLT+AKFRALRLLWAR+EQ Sbjct: 231 QELAFVLASAVAYLRGLESAGTALENARGLIYARLSADADQFLTLAKFRALRLLWARIEQ 290 Query: 62 ACGLTPKPIFVNAQTAWRMLTQRDPNVNMLRATIATFAAGLGGANAITVLPHTLALGLPD 121 ACGL PKP+F+ A+TAWRMLT+RDP VNMLRATIATF+AGLGGA+++TVLPHTLALGLPD Sbjct: 291 ACGLAPKPLFIAAETAWRMLTRRDPYVNMLRATIATFSAGLGGADSLTVLPHTLALGLPD 350 Query: 122 DFARRIARNTQLVLLDESNLAKVSDPAAGAGGIETLTSQLCEAAWTLFQEIEKAGGVFAA 181 DFARRIARNTQ +LL+ES+LAKV+DPAAG+GGIETLT QLCEAAW LFQEIEKAGG FAA Sbjct: 351 DFARRIARNTQFILLEESSLAKVADPAAGSGGIETLTRQLCEAAWALFQEIEKAGGAFAA 410 Query: 182 LERGLLQNKVAATRSLRETNVAKRRDVLTGASEFPDLREAVPAVLDVKPSAPVSVADAKV 241 L + L+Q V ATR+ RE NVAKRRDVLTGASEFP+L E P VLD KP + K+ Sbjct: 411 LTQSLIQRNVVATRAAREANVAKRRDVLTGASEFPNLHEKPPEVLDAKPVILAPYGETKI 470 Query: 242 KFDALAPIRLPPPX----DKSDAALKAHGARPKIFLANLGTAADFTARATFAKSFFETGG 297 KFDALAP+RL P D+SDA L A GARPK+FLA LGTAADFTARATFA+SFFETGG Sbjct: 471 KFDALAPMRLAAPYEKLRDRSDAMLAAIGARPKVFLATLGTAADFTARATFARSFFETGG 530 Query: 298 IEAIDSEGFADAAV--LAAAFKASGATMACICSSDKVYAVSAAEAARALQGAGARHIYLA 355 IEA+D D LAAAF+ASGA + C+CSSD VYA AA A +A AGARHIYLA Sbjct: 531 IEAVDPPSPLDVKTAALAAAFRASGAQLVCLCSSDHVYADQAAAAVQAFHAAGARHIYLA 590 Query: 356 GRPADQEASLRAAGIGEFVFAGGDALATLREAYRRMEQ 393 G P E +LR+AG+ +F+FAGGDALA L +A+RR+EQ Sbjct: 591 GPPGKLETALRSAGVQDFIFAGGDALAVLSDAWRRLEQ 628