BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0031.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774467.1| ABC transporter substrate-binding protein [Brad... 369 e-100 ref|NP_949061.1| high-affinity leucine-isoleucine-valine transpo... 347 7e-94 ref|YP_001993216.1| ABC transporter substrate-binding protein [R... 345 2e-93 ref|YP_004107976.1| extracellular ligand-binding receptor [Rhodo... 336 1e-90 ref|YP_782696.1| extracellular ligand-binding receptor [Rhodopse... 334 5e-90 >ref|NP_774467.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53092.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 438 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/201 (87%), Positives = 186/201 (92%) Query: 1 MEESYEISEPSIDGHIVKIKAANPDVLLIYTTPKFGAQTIKKTAELGWKPLQIITNVSAS 60 MEESYE+SEPSIDGHIVKIKAANPDVLLIY TPKF AQTIKKTAEL WKPLQI+TNVS S Sbjct: 238 MEESYEVSEPSIDGHIVKIKAANPDVLLIYATPKFAAQTIKKTAELNWKPLQILTNVSIS 297 Query: 61 VGSVMQPAGFDNAQGVLSAAYAKDGADTQWTNDPGMKKWAEFLDKYMPGADKTDGGYVYG 120 VGSVM+PAGF+NAQGVLSAAYAKD D QW NDPGMKKW EF+DKYMPGADK+D VYG Sbjct: 298 VGSVMKPAGFENAQGVLSAAYAKDSTDPQWANDPGMKKWNEFVDKYMPGADKSDTSMVYG 357 Query: 121 YGAAQTLAKVLEMCGDDLTRANVMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQ 180 YGAA TLAK LEMCGDDLTRAN+MKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQ Sbjct: 358 YGAASTLAKALEMCGDDLTRANLMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQ 417 Query: 181 RFKGQKWELFGDIISGDVPSE 201 RFKG++WELFG+IISGDV SE Sbjct: 418 RFKGERWELFGEIISGDVASE 438 >ref|NP_949061.1| high-affinity leucine-isoleucine-valine transport system periplasmic binding protein [Rhodopseudomonas palustris CGA009] emb|CAE29165.1| possible high-affinity leucine-isoleucine-valine transport system; periplasmic binding protein [Rhodopseudomonas palustris CGA009] Length = 410 Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 165/199 (82%), Positives = 177/199 (88%) Query: 2 EESYEISEPSIDGHIVKIKAANPDVLLIYTTPKFGAQTIKKTAELGWKPLQIITNVSASV 61 EE+YEISEP+ID HIVK+K+ NPDVLLIYTTPKFGAQTI+KTAE+GWKPLQI+TNVSASV Sbjct: 211 EEAYEISEPTIDSHIVKLKSLNPDVLLIYTTPKFGAQTIRKTAEIGWKPLQILTNVSASV 270 Query: 62 GSVMQPAGFDNAQGVLSAAYAKDGADTQWTNDPGMKKWAEFLDKYMPGADKTDGGYVYGY 121 GSVMQPAGFDNAQGVLSA YAKD D QW NDP KKW F+DKYMPGA+K DG VYGY Sbjct: 271 GSVMQPAGFDNAQGVLSANYAKDPTDPQWDNDPRFKKWHAFVDKYMPGANKADGNLVYGY 330 Query: 122 GAAQTLAKVLEMCGDDLTRANVMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQR 181 GAAQTL KVLEMCGD+LTR N+MKQAASLKDF PDTLLPGVKINTS TDFAPI+QLQM R Sbjct: 331 GAAQTLHKVLEMCGDNLTRENLMKQAASLKDFEPDTLLPGVKINTSPTDFAPISQLQMMR 390 Query: 182 FKGQKWELFGDIISGDVPS 200 FKG KWELFGDIIS D PS Sbjct: 391 FKGDKWELFGDIISADAPS 409 >ref|YP_001993216.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF02741.1| ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] Length = 410 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 164/200 (82%), Positives = 177/200 (88%) Query: 2 EESYEISEPSIDGHIVKIKAANPDVLLIYTTPKFGAQTIKKTAELGWKPLQIITNVSASV 61 EE+YEISEP+ID HIVK+K+ NPDVLLIYTTPKFGAQTI+KTAE+GWKPLQI+TNVSASV Sbjct: 211 EEAYEISEPTIDSHIVKLKSLNPDVLLIYTTPKFGAQTIRKTAEIGWKPLQILTNVSASV 270 Query: 62 GSVMQPAGFDNAQGVLSAAYAKDGADTQWTNDPGMKKWAEFLDKYMPGADKTDGGYVYGY 121 GSVMQPAGFDNAQGVLSA YAKD D QW NDP KKW F+DKYMPGA+K DG VYGY Sbjct: 271 GSVMQPAGFDNAQGVLSANYAKDPTDPQWDNDPRFKKWHAFVDKYMPGANKADGNLVYGY 330 Query: 122 GAAQTLAKVLEMCGDDLTRANVMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQR 181 GAAQTL KVLEMCGD+LTR N+MKQAASLKDF PDTLLPGVKINTS TDFAPI+QLQM R Sbjct: 331 GAAQTLHKVLEMCGDNLTRENLMKQAASLKDFEPDTLLPGVKINTSPTDFAPISQLQMMR 390 Query: 182 FKGQKWELFGDIISGDVPSE 201 FKG KWELFGDIIS D P+ Sbjct: 391 FKGDKWELFGDIISADAPTN 410 >ref|YP_004107976.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU43243.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 411 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/196 (81%), Positives = 173/196 (88%) Query: 2 EESYEISEPSIDGHIVKIKAANPDVLLIYTTPKFGAQTIKKTAELGWKPLQIITNVSASV 61 EE+YEIS P+ID HIVK+++ NPDVLLIYTTPKFGAQTI+KTAELGWKP+QI+TNVSASV Sbjct: 212 EEAYEISAPTIDSHIVKLRSLNPDVLLIYTTPKFGAQTIRKTAELGWKPMQILTNVSASV 271 Query: 62 GSVMQPAGFDNAQGVLSAAYAKDGADTQWTNDPGMKKWAEFLDKYMPGADKTDGGYVYGY 121 GSVMQPAGFDNAQGVLSA YAKD D QW NDP K W F+DKYMPGA+K DG VYGY Sbjct: 272 GSVMQPAGFDNAQGVLSANYAKDPTDPQWDNDPRFKNWHAFVDKYMPGANKADGNLVYGY 331 Query: 122 GAAQTLAKVLEMCGDDLTRANVMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQR 181 GAAQTL KVLEMCGD+LTR N+MKQAASLKDF DTLLPG+KINTSATDFAPI+QLQM R Sbjct: 332 GAAQTLHKVLEMCGDNLTRENLMKQAASLKDFETDTLLPGIKINTSATDFAPISQLQMMR 391 Query: 182 FKGQKWELFGDIISGD 197 FKG KWELFGDIIS D Sbjct: 392 FKGDKWELFGDIISAD 407 >ref|YP_782696.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07716.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 411 Score = 334 bits (856), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 161/200 (80%), Positives = 175/200 (87%) Query: 2 EESYEISEPSIDGHIVKIKAANPDVLLIYTTPKFGAQTIKKTAELGWKPLQIITNVSASV 61 EESYE+SEP+ID HIVK+K+ NPDVLLIYTTPKFGAQTIKKTAEL WKPLQIITNVSASV Sbjct: 212 EESYEVSEPTIDSHIVKLKSINPDVLLIYTTPKFGAQTIKKTAELSWKPLQIITNVSASV 271 Query: 62 GSVMQPAGFDNAQGVLSAAYAKDGADTQWTNDPGMKKWAEFLDKYMPGADKTDGGYVYGY 121 GSVMQPAGFDNAQG+LSAAYAKDG D QW +DP K W F+DKYMPGA+KTDG VYGY Sbjct: 272 GSVMQPAGFDNAQGLLSAAYAKDGTDPQWNDDPKFKNWHAFVDKYMPGANKTDGNIVYGY 331 Query: 122 GAAQTLAKVLEMCGDDLTRANVMKQAASLKDFTPDTLLPGVKINTSATDFAPIAQLQMQR 181 G A TLA+VL CGD+LTR NVMKQAASLKD DTLLPGVKINTSATDFAPI+Q QM R Sbjct: 332 GTAATLAEVLRKCGDNLTRDNVMKQAASLKDLELDTLLPGVKINTSATDFAPISQQQMIR 391 Query: 182 FKGQKWELFGDIISGDVPSE 201 FKG+KWELFGDIIS DV ++ Sbjct: 392 FKGEKWELFGDIISADVATD 411