BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0027.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopse... 635 e-180 ref|ZP_08628357.1| putative ABC-type branched-chain amino acid t... 626 e-177 ref|ZP_08628358.1| ligand-binding receptor [Bradyrhizobiaceae ba... 623 e-176 ref|YP_001993217.1| branched-chain amino acid ABC transporter pe... 622 e-176 ref|NP_949062.1| leucine/isoleucine/valine-binding protein [Rhod... 622 e-176 >ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07717.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 409 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 303/399 (75%), Positives = 345/399 (86%) Query: 6 QLTAFAAALALVAASGSAALAQKKYDTGASDTEIKIGNIMPYSGAASAYGVIGKTEEAYF 65 +L A +AA AL+ A+ +AA AQKKYD GASDTEIKIGNIMPYSG ASAYGVIG+TE AYF Sbjct: 7 RLAAVSAATALLVAASTAAFAQKKYDPGASDTEIKIGNIMPYSGPASAYGVIGRTEAAYF 66 Query: 66 RKINAEGGINGRKINFISYDDAYTPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIQKYM 125 +KIN GGINGRKINF+SYDDAY+PPK VEQARKLVESDEVLLIFNSLGTP NSAIQKYM Sbjct: 67 KKINDAGGINGRKINFVSYDDAYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIQKYM 126 Query: 126 NQKKVPQLFVATGATKWNDPKEFPWTMGWQPNYQSESIIYAKYILKNKPDAKIAVLYQND 185 N KKVPQLFVATGATKWNDPK+FPWTMGWQPNYQSE+ IYAKYILK P +KIAVLYQND Sbjct: 127 NAKKVPQLFVATGATKWNDPKDFPWTMGWQPNYQSETQIYAKYILKQMPTSKIAVLYQND 186 Query: 186 DYGKDYLKGFKDGLGAKAASMIVAEDSYEVTEPTIDSHIVRLKASGADVFFNITTPKFAA 245 DYGKDYLKG KDGLGAKA+SMIV E+SYE +EPTID+HIV+LK++GAD+F NITTPKFAA Sbjct: 187 DYGKDYLKGLKDGLGAKASSMIVMEESYETSEPTIDNHIVKLKSTGADIFINITTPKFAA 246 Query: 246 QAIKKNAELNWKPLHFLNNVSGSIGSVIKPAGFENAQDIISSQYFKDPTDAQWKTDKAMI 305 QAIKKNAE+ WKP+HFLNNVS S+GSV+KPAGFENAQDIIS+ Y KD TD QWK D M Sbjct: 247 QAIKKNAEIGWKPIHFLNNVSASVGSVLKPAGFENAQDIISAAYLKDVTDPQWKDDAGMK 306 Query: 306 AWNEFLDKYYPEANRADASVMYAYIVSQGLVHVLKACGDNLTRENIMKQAASIRDYEPGG 365 + F+DK +PE N+ D +V+ Y V+Q LV VLK GDNLTREN+MKQAAS++D+ Sbjct: 307 DFLAFMDKDFPEGNKLDNAVVVGYGVAQTLVEVLKKSGDNLTRENVMKQAASLKDFRTEV 366 Query: 366 LLPGVKVNTSATDFAPLSQLQLIRFKGETWERFGEVLXA 404 LLPG+K+NTSA+DFAP+SQLQL RFKGE WE FG+V+ A Sbjct: 367 LLPGIKINTSASDFAPISQLQLQRFKGEKWELFGDVISA 405 >ref|ZP_08628357.1| putative ABC-type branched-chain amino acid transporter [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08860.1| putative ABC-type branched-chain amino acid transporter [Bradyrhizobiaceae bacterium SG-6C] Length = 408 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 304/402 (75%), Positives = 345/402 (85%) Query: 1 MSGIRQLTAFAAALALVAASGSAALAQKKYDTGASDTEIKIGNIMPYSGAASAYGVIGKT 60 M QL AA LA++AA+GS+A AQKKYDTGASDTEIKIGNIMPYSG ASAYG IGK+ Sbjct: 1 MKTTTQLATVAATLAMLAATGSSAFAQKKYDTGASDTEIKIGNIMPYSGPASAYGAIGKS 60 Query: 61 EEAYFRKINAEGGINGRKINFISYDDAYTPPKTVEQARKLVESDEVLLIFNSLGTPPNSA 120 E+AYF KINAEGGINGRKINFISYDD Y+PPK VEQARKLVESDEVL+++ LGTP NSA Sbjct: 61 EQAYFNKINAEGGINGRKINFISYDDGYSPPKAVEQARKLVESDEVLIVYGPLGTPSNSA 120 Query: 121 IQKYMNQKKVPQLFVATGATKWNDPKEFPWTMGWQPNYQSESIIYAKYILKNKPDAKIAV 180 IQKY+N KKVPQLFVATGATKWNDPK+FPWTMGWQPNYQSE IYA Y+LK KP+AKI + Sbjct: 121 IQKYLNAKKVPQLFVATGATKWNDPKDFPWTMGWQPNYQSEGRIYANYLLKEKPNAKIGI 180 Query: 181 LYQNDDYGKDYLKGFKDGLGAKAASMIVAEDSYEVTEPTIDSHIVRLKASGADVFFNITT 240 LYQNDDYGKDYLKG KDGLG K ASMI+AE+SYE + PTIDS +V LK+ GADVF +ITT Sbjct: 181 LYQNDDYGKDYLKGIKDGLGKKGASMIIAEESYETSVPTIDSQVVALKSKGADVFISITT 240 Query: 241 PKFAAQAIKKNAELNWKPLHFLNNVSGSIGSVIKPAGFENAQDIISSQYFKDPTDAQWKT 300 PKFAAQ+IKK AEL WKPL LNNVS S+GSVIKPAGFEN+Q+IIS+ Y KDPTD QWK Sbjct: 241 PKFAAQSIKKVAELEWKPLFILNNVSASVGSVIKPAGFENSQNIISAAYAKDPTDPQWKD 300 Query: 301 DKAMIAWNEFLDKYYPEANRADASVMYAYIVSQGLVHVLKACGDNLTRENIMKQAASIRD 360 DK M ++ FL KY P+ NRAD SV+Y Y +Q LVHVLKACGDNLTR NIMKQAAS+++ Sbjct: 301 DKGMKNYDAFLQKYAPDLNRADGSVIYGYNSAQTLVHVLKACGDNLTRANIMKQAASMKN 360 Query: 361 YEPGGLLPGVKVNTSATDFAPLSQLQLIRFKGETWERFGEVL 402 E GLLPGVK+NTSATDFAP+SQ+QL+RFKG+TWERFG++L Sbjct: 361 LELEGLLPGVKINTSATDFAPISQMQLMRFKGQTWERFGDIL 402 >ref|ZP_08628358.1| ligand-binding receptor [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08861.1| ligand-binding receptor [Bradyrhizobiaceae bacterium SG-6C] Length = 411 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 295/397 (74%), Positives = 337/397 (84%) Query: 6 QLTAFAAALALVAASGSAALAQKKYDTGASDTEIKIGNIMPYSGAASAYGVIGKTEEAYF 65 +L +AA+A+V A+ + A AQKKY G +DTEIKIGNIMPYSG ASAYGVIGKTE+AYF Sbjct: 9 RLAIASAAMAMVLATSTGAFAQKKYGPGVTDTEIKIGNIMPYSGPASAYGVIGKTEQAYF 68 Query: 66 RKINAEGGINGRKINFISYDDAYTPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIQKYM 125 KINAEGGINGRKINFISYDD Y+PPK VEQARKLVESDEVLLIFNSLGTP NSAI KYM Sbjct: 69 NKINAEGGINGRKINFISYDDGYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIHKYM 128 Query: 126 NQKKVPQLFVATGATKWNDPKEFPWTMGWQPNYQSESIIYAKYILKNKPDAKIAVLYQND 185 N KKVPQLFVATGATKWNDPKEFPWTMGWQPNYQSE IYAKYILK KP+ KI +LYQND Sbjct: 129 NSKKVPQLFVATGATKWNDPKEFPWTMGWQPNYQSEGRIYAKYILKEKPNGKIGILYQND 188 Query: 186 DYGKDYLKGFKDGLGAKAASMIVAEDSYEVTEPTIDSHIVRLKASGADVFFNITTPKFAA 245 DYGKDY+KG KDGLGAKAASMI+AE+SYE EP+ID+H+V LKA GADVF ++TTPKFAA Sbjct: 189 DYGKDYVKGIKDGLGAKAASMIIAEESYETAEPSIDTHVVTLKAKGADVFISVTTPKFAA 248 Query: 246 QAIKKNAELNWKPLHFLNNVSGSIGSVIKPAGFENAQDIISSQYFKDPTDAQWKTDKAMI 305 Q+IKK AEL WKPL LNNV S G+V+KPAGF+N+Q IIS+ Y KD TD QWK D + Sbjct: 249 QSIKKVAELQWKPLFILNNVGASTGTVMKPAGFDNSQGIISAAYAKDATDPQWKDDAGIK 308 Query: 306 AWNEFLDKYYPEANRADASVMYAYIVSQGLVHVLKACGDNLTRENIMKQAASIRDYEPGG 365 +++ FL KY+P+ NRAD SVM Y V+Q LVHVLKACGDNLTREN+MKQAASIR + G Sbjct: 309 SFDAFLTKYFPDGNRADGSVMVGYDVAQTLVHVLKACGDNLTRENVMKQAASIRGLKLDG 368 Query: 366 LLPGVKVNTSATDFAPLSQLQLIRFKGETWERFGEVL 402 LLPGV +NTSATDFAP+SQLQL++F+G+ W FG+V+ Sbjct: 369 LLPGVTINTSATDFAPISQLQLMKFQGDRWVLFGDVM 405 >ref|YP_001993217.1| branched-chain amino acid ABC transporter periplasmic protein [Rhodopseudomonas palustris TIE-1] gb|ACF02742.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 409 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 295/386 (76%), Positives = 335/386 (86%) Query: 19 ASGSAALAQKKYDTGASDTEIKIGNIMPYSGAASAYGVIGKTEEAYFRKINAEGGINGRK 78 A+ + ALAQKKYD GASDTEI+IGNIMPYSG ASAYGVIG+TE AYF+ IN +GGINGRK Sbjct: 20 AASNGALAQKKYDPGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRK 79 Query: 79 INFISYDDAYTPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIQKYMNQKKVPQLFVATG 138 INFISYDDAY+PPKTVEQARKLVESDEVLLIFNSLGTPPNSAI KYMN KKVPQLFVATG Sbjct: 80 INFISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATG 139 Query: 139 ATKWNDPKEFPWTMGWQPNYQSESIIYAKYILKNKPDAKIAVLYQNDDYGKDYLKGFKDG 198 A+KWNDPK +PWTMGWQPNYQSE+ IYAKYILK P+AKIAVLYQNDDYGKDYLKGF+DG Sbjct: 140 ASKWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFEDG 199 Query: 199 LGAKAASMIVAEDSYEVTEPTIDSHIVRLKASGADVFFNITTPKFAAQAIKKNAELNWKP 258 LGAK SMIV ++SYEV+EPTID+HIV+LK++GADVF NITTPKFAAQAIKK AE+ WKP Sbjct: 200 LGAKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGWKP 259 Query: 259 LHFLNNVSGSIGSVIKPAGFENAQDIISSQYFKDPTDAQWKTDKAMIAWNEFLDKYYPEA 318 HFLNNVS S+GSVIKPAG+ENAQ +IS+ Y KD +D QWK D M + F+DK +PE Sbjct: 260 THFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFPEG 319 Query: 319 NRADASVMYAYIVSQGLVHVLKACGDNLTRENIMKQAASIRDYEPGGLLPGVKVNTSATD 378 N+ D + Y V+Q LV VLKACGDNLTREN+MKQAAS++DY LLPG+K+NTSATD Sbjct: 320 NKLDGGTIVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATD 379 Query: 379 FAPLSQLQLIRFKGETWERFGEVLXA 404 FAP+SQLQL+RFKGE WE FG+V+ A Sbjct: 380 FAPVSQLQLMRFKGEKWELFGDVISA 405 >ref|NP_949062.1| leucine/isoleucine/valine-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE29166.1| possible leucine/isoleucine/valine-binding protein precursor [Rhodopseudomonas palustris CGA009] Length = 409 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 295/386 (76%), Positives = 335/386 (86%) Query: 19 ASGSAALAQKKYDTGASDTEIKIGNIMPYSGAASAYGVIGKTEEAYFRKINAEGGINGRK 78 A+ + ALAQKKYD GASDTEI+IGNIMPYSG ASAYGVIG+TE AYF+ IN +GGINGRK Sbjct: 20 AASNGALAQKKYDPGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRK 79 Query: 79 INFISYDDAYTPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIQKYMNQKKVPQLFVATG 138 INFISYDDAY+PPKTVEQARKLVESDEVLLIFNSLGTPPNSAI KYMN KKVPQLFVATG Sbjct: 80 INFISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATG 139 Query: 139 ATKWNDPKEFPWTMGWQPNYQSESIIYAKYILKNKPDAKIAVLYQNDDYGKDYLKGFKDG 198 A+KWNDPK +PWTMGWQPNYQSE+ IYAKYILK P+AKIAVLYQNDDYGKDYLKGF+DG Sbjct: 140 ASKWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFEDG 199 Query: 199 LGAKAASMIVAEDSYEVTEPTIDSHIVRLKASGADVFFNITTPKFAAQAIKKNAELNWKP 258 LGAK SMIV ++SYEV+EPTID+HIV+LK++GADVF NITTPKFAAQAIKK AE+ WKP Sbjct: 200 LGAKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGWKP 259 Query: 259 LHFLNNVSGSIGSVIKPAGFENAQDIISSQYFKDPTDAQWKTDKAMIAWNEFLDKYYPEA 318 HFLNNVS S+GSVIKPAG+ENAQ +IS+ Y KD +D QWK D M + F+DK +PE Sbjct: 260 THFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFPEG 319 Query: 319 NRADASVMYAYIVSQGLVHVLKACGDNLTRENIMKQAASIRDYEPGGLLPGVKVNTSATD 378 N+ D + Y V+Q LV VLKACGDNLTREN+MKQAAS++DY LLPG+K+NTSATD Sbjct: 320 NKLDGGTVVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATD 379 Query: 379 FAPLSQLQLIRFKGETWERFGEVLXA 404 FAP+SQLQL+RFKGE WE FG+V+ A Sbjct: 380 FAPVSQLQLMRFKGEKWELFGDVISA 405