BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0016.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_782704.1| inner-membrane translocator [Rhodopseudomonas p... 518 e-145 ref|YP_001990993.1| inner-membrane translocator [Rhodopseudomona... 508 e-142 ref|NP_947138.1| branched-chain amino acid transport system perm... 504 e-141 ref|YP_487177.1| inner-membrane translocator [Rhodopseudomonas p... 494 e-138 ref|NP_774472.1| ABC transporter permease protein [Bradyrhizobiu... 493 e-137 >ref|YP_782704.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] gb|ABJ07724.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] Length = 346 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/341 (82%), Positives = 308/341 (90%) Query: 1 MLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALSYAMLATGQVPGTAR 60 +LFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEF+T+GAL+YA L+ G VPGTA+ Sbjct: 6 LLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFITFGALTYATLSAGNVPGTAQ 65 Query: 61 LAVAMGLVAFALDLFFARNALHARLVIRSVALNIAFPVALLGLVYALVGPGTPVAVNIAL 120 LA+AMG VAF D+ AR ALH + +RS+A+NIA P+ALLG+ AL T +AVNIAL Sbjct: 66 LALAMGAVAFCFDMVAARKALHLKQTLRSLAINIALPLALLGMTTALADRQTGIAVNIAL 125 Query: 121 ALLIVAAIGLFLYRIAFQPIAHTSVLVLLIASVGCHLALQGLGLVFFGAEGLRAPALSNA 180 +L IVAAIGL+LYRIAFQP+AHTSVLVLLIASVG HLALQG GLVFFGAEG R PALS+A Sbjct: 126 SLAIVAAIGLYLYRIAFQPLAHTSVLVLLIASVGAHLALQGFGLVFFGAEGQRGPALSSA 185 Query: 181 AVTAGPLRFTGQSLAVYGLTIGFIVALWLFFGYTKTGKALRATAVNRLGARLVGIRTTLS 240 A+T G LRFTGQSLAVY +TI IVALWLFFG+T GKALRATAVNRLGARLVGIRT+LS Sbjct: 186 ALTLGQLRFTGQSLAVYSITIALIVALWLFFGFTLYGKALRATAVNRLGARLVGIRTSLS 245 Query: 241 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLVSYPLTAVAAIVVG 300 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGL+SYPLTAVAA+VVG Sbjct: 246 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLISYPLTAVAALVVG 305 Query: 301 IVEAFSSFYASNFKEVIVFTLILPVLVLRSLAAPEVEEEKD 341 IVEAFSSFYASN+KEVIVFTLILPVLVLRSLAAP VEEEKD Sbjct: 306 IVEAFSSFYASNYKEVIVFTLILPVLVLRSLAAPAVEEEKD 346 >ref|YP_001990993.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] gb|ACF00518.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 346 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/341 (81%), Positives = 305/341 (89%) Query: 1 MLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALSYAMLATGQVPGTAR 60 +LFL+QDGITNGAIYALLGLALVLVFAVTRVILIPQGEF+T+GAL+YA L+ G VPGTA+ Sbjct: 6 LLFLVQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFITFGALTYATLSAGGVPGTAQ 65 Query: 61 LAVAMGLVAFALDLFFARNALHARLVIRSVALNIAFPVALLGLVYALVGPGTPVAVNIAL 120 LA+ MGLVAFA +LF AR +LH V+R+ + IAFP +L L L VAVNIAL Sbjct: 66 LALVMGLVAFAFELFSARKSLHVAKVMRAALIYIAFPAIVLALATWLPAHKPGVAVNIAL 125 Query: 121 ALLIVAAIGLFLYRIAFQPIAHTSVLVLLIASVGCHLALQGLGLVFFGAEGLRAPALSNA 180 +LLIVAAIGLFLYRIAFQP+AHTSVLVLLIASVGCHLALQG GLVFFGAEGLR P LS+ Sbjct: 126 SLLIVAAIGLFLYRIAFQPLAHTSVLVLLIASVGCHLALQGFGLVFFGAEGLRGPPLSDV 185 Query: 181 AVTAGPLRFTGQSLAVYGLTIGFIVALWLFFGYTKTGKALRATAVNRLGARLVGIRTTLS 240 A++ GPL FTGQSLAVYG+T+ + ALWLFFGYT+ GKALRATAVNRLGARLVGIRT+LS Sbjct: 186 ALSVGPLLFTGQSLAVYGITLALMAALWLFFGYTRYGKALRATAVNRLGARLVGIRTSLS 245 Query: 241 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLVSYPLTAVAAIVVG 300 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGF+AAIIGGLVSYPLTA+AAIVVG Sbjct: 246 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFVAAIIGGLVSYPLTAIAAIVVG 305 Query: 301 IVEAFSSFYASNFKEVIVFTLILPVLVLRSLAAPEVEEEKD 341 IVE+FSSFYASN+KEVIVFTLILPVLVLRSLAAP VEEEKD Sbjct: 306 IVESFSSFYASNYKEVIVFTLILPVLVLRSLAAPAVEEEKD 346 >ref|NP_947138.1| branched-chain amino acid transport system permease [Rhodopseudomonas palustris CGA009] emb|CAE27234.1| branched-chain amino acid transport system permease protein [Rhodopseudomonas palustris CGA009] Length = 346 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 275/341 (80%), Positives = 303/341 (88%) Query: 1 MLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALSYAMLATGQVPGTAR 60 +LFL+QDGITNGAIYALLGLALVLVFAVTRVILIPQGEF+T+GAL+YA L+ G VPGTA+ Sbjct: 6 LLFLVQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFITFGALTYATLSAGGVPGTAQ 65 Query: 61 LAVAMGLVAFALDLFFARNALHARLVIRSVALNIAFPVALLGLVYALVGPGTPVAVNIAL 120 LA+ MGLVAF +LF AR +LH V+R+ + IAFP +L L L VAVNIAL Sbjct: 66 LALMMGLVAFGFELFSARKSLHVAKVMRAALIYIAFPAIVLALATWLPAHKPGVAVNIAL 125 Query: 121 ALLIVAAIGLFLYRIAFQPIAHTSVLVLLIASVGCHLALQGLGLVFFGAEGLRAPALSNA 180 +LLIVAAIGLFLYRIAFQP+AHTSVLVLLIASVGCHLALQG GLVFFGAEGLR P LS+ Sbjct: 126 SLLIVAAIGLFLYRIAFQPLAHTSVLVLLIASVGCHLALQGFGLVFFGAEGLRGPPLSDV 185 Query: 181 AVTAGPLRFTGQSLAVYGLTIGFIVALWLFFGYTKTGKALRATAVNRLGARLVGIRTTLS 240 A++ GPL FTGQSLAVYG+T+ + ALWLFFGYT+ GKALRATAVNRLGARLVGIRT+LS Sbjct: 186 ALSVGPLLFTGQSLAVYGITLALMAALWLFFGYTRYGKALRATAVNRLGARLVGIRTSLS 245 Query: 241 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLVSYPLTAVAAIVVG 300 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGF+AAIIGGLVSYPLTA+AAIVVG Sbjct: 246 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFVAAIIGGLVSYPLTAIAAIVVG 305 Query: 301 IVEAFSSFYASNFKEVIVFTLILPVLVLRSLAAPEVEEEKD 341 IVE+FSSFYASN+KEVIVFTLILPVLVLRSLA P VEEEKD Sbjct: 306 IVESFSSFYASNYKEVIVFTLILPVLVLRSLATPAVEEEKD 346 >ref|YP_487177.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] gb|ABD08266.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] Length = 346 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 272/341 (79%), Positives = 299/341 (87%) Query: 1 MLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALSYAMLATGQVPGTAR 60 +LFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEF+T+GAL+YA L+ G VPGTA Sbjct: 6 LLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFITFGALTYATLSAGGVPGTAG 65 Query: 61 LAVAMGLVAFALDLFFARNALHARLVIRSVALNIAFPVALLGLVYALVGPGTPVAVNIAL 120 LA+ MG+VAF +LF R +L A V R+ + + FP +L L L VAVNIAL Sbjct: 66 LAMVMGIVAFGFELFSTRRSLRAARVFRAALIYLVFPAVVLALATLLPATRPGVAVNIAL 125 Query: 121 ALLIVAAIGLFLYRIAFQPIAHTSVLVLLIASVGCHLALQGLGLVFFGAEGLRAPALSNA 180 +LLIVAAIGLFLYRIAFQP+AHTSVLVLLIASVG HLALQG GLVFFGAEGLR P LS+A Sbjct: 126 SLLIVAAIGLFLYRIAFQPLAHTSVLVLLIASVGVHLALQGFGLVFFGAEGLRGPPLSDA 185 Query: 181 AVTAGPLRFTGQSLAVYGLTIGFIVALWLFFGYTKTGKALRATAVNRLGARLVGIRTTLS 240 AVT GPLRFTGQS+AVY +TI + ALWLFFGYT+ GKALRATAVNRLGARLVGIRT+LS Sbjct: 186 AVTIGPLRFTGQSIAVYAITIALMAALWLFFGYTRYGKALRATAVNRLGARLVGIRTSLS 245 Query: 241 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLVSYPLTAVAAIVVG 300 GQ+AFLLASVIGAISGILIVPITTLYYDTGFLIGLKGF+AAIIGGL+SYPLTA AAIVVG Sbjct: 246 GQLAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFVAAIIGGLISYPLTAFAAIVVG 305 Query: 301 IVEAFSSFYASNFKEVIVFTLILPVLVLRSLAAPEVEEEKD 341 +VEAFSSFYASN+KEVIVFTLILPVLVLRSLAAP V+EEKD Sbjct: 306 VVEAFSSFYASNYKEVIVFTLILPVLVLRSLAAPAVDEEKD 346 >ref|NP_774472.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53097.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 341 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/341 (78%), Positives = 298/341 (87%) Query: 1 MLFLLQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALSYAMLATGQVPGTAR 60 MLFL+QDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGAL+YA LA GQ+PGTA+ Sbjct: 1 MLFLVQDGITNGAIYALLGLALVLVFAVTRVILIPQGEFVTYGALTYASLAAGQMPGTAK 60 Query: 61 LAVAMGLVAFALDLFFARNALHARLVIRSVALNIAFPVALLGLVYALVGPGTPVAVNIAL 120 LA+A+G+ AF DLF AR ALH RL++RSV NI P +L L PVAV IAL Sbjct: 61 LALALGIGAFGFDLFVARKALHGRLILRSVLTNIVLPAIVLALTIYFAAQKPPVAVCIAL 120 Query: 121 ALLIVAAIGLFLYRIAFQPIAHTSVLVLLIASVGCHLALQGLGLVFFGAEGLRAPALSNA 180 +L+IVA IGL+LYRIAFQP+AHTSVLVLLIASVG HLALQGLGL+FFGAEG R PA+ + Sbjct: 121 SLVIVAMIGLYLYRIAFQPLAHTSVLVLLIASVGVHLALQGLGLLFFGAEGQRGPAVLSG 180 Query: 181 AVTAGPLRFTGQSLAVYGLTIGFIVALWLFFGYTKTGKALRATAVNRLGARLVGIRTTLS 240 + TAG LRFTGQS+ VY +TI FIV LWLFFG T GKALRATAVNRLGARL GIRTTLS Sbjct: 181 SFTAGALRFTGQSITVYAITIAFIVGLWLFFGLTLYGKALRATAVNRLGARLAGIRTTLS 240 Query: 241 GQIAFLLASVIGAISGILIVPITTLYYDTGFLIGLKGFIAAIIGGLVSYPLTAVAAIVVG 300 GQIAFLLASVIGA+SGI+IVPITTLYYD+GFLIGLKGF+AAIIGGLVSYPLTAVAA+VVG Sbjct: 241 GQIAFLLASVIGALSGIMIVPITTLYYDSGFLIGLKGFVAAIIGGLVSYPLTAVAALVVG 300 Query: 301 IVEAFSSFYASNFKEVIVFTLILPVLVLRSLAAPEVEEEKD 341 IVEAFSSFYASN+KEVIVF L++PVL+LRSLAAP VEEEKD Sbjct: 301 IVEAFSSFYASNYKEVIVFMLLIPVLLLRSLAAPAVEEEKD 341