BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0013.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_782709.1| extracellular ligand-binding receptor [Rhodopse... 631 e-179 ref|YP_001203119.1| branched chain amino acid ABC transporter su... 629 e-178 ref|YP_001242878.1| putative branched-chain amino acid transport... 628 e-178 ref|NP_774488.1| substrate-binding protein [Bradyrhizobium japon... 600 e-169 ref|YP_001990989.1| extracellular ligand-binding receptor [Rhodo... 599 e-169 >ref|YP_782709.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07729.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 382 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 304/368 (82%), Positives = 336/368 (91%), Gaps = 1/368 (0%) Query: 15 IALPGAPAQAQTNEITIGITISTTGPAAALGIPERNALDFVPKEIGGVPLKLIVLDDGGD 74 ++LPG A AQ+++ITIG+TISTTGPAAALGIPERNALDFVPKEIGG +KLIVLDDGGD Sbjct: 15 LSLPGL-AAAQSSDITIGVTISTTGPAAALGIPERNALDFVPKEIGGHAIKLIVLDDGGD 73 Query: 75 PTAATTNTRRFVTESKADIIMGSCITPTTIAVSTVANEAGIPHLGLAPFPINDARAKWSV 134 PTAATTN RRFVTESKADI+MGS TP T+AVSTVANEAGIPH GLAP P N+AR KWSV Sbjct: 74 PTAATTNARRFVTESKADIVMGSSTTPPTVAVSTVANEAGIPHFGLAPLPFNEARMKWSV 133 Query: 135 DLPQSIPIMGKVLYEHMKAHNIKTVGYIGYLDSYGDLWVNDFKAQAVPMGLTMTDEERFA 194 +PQ IPIMGKVLYEHMK +N+KTVGYIGY DSYGDLW ND K QAVPMG+T+ DEERFA Sbjct: 134 AMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKNQAVPMGITIVDEERFA 193 Query: 195 RPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALRERGYKGLIYQTHGAASMDFIRI 254 RPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALR+RGYKGLIYQTHGAASMDFIRI Sbjct: 194 RPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALRDRGYKGLIYQTHGAASMDFIRI 253 Query: 255 AGAAAEGVIMSAGPIMSPETQPDSALTKKPGLALNTAYEAKYGANSRSQFAGHSYDAFEV 314 AG +AEGV+M++GP+M PE Q D ALTKKPGLALN AYEAK+G NSRSQFAGHSYDAFE+ Sbjct: 254 AGPSAEGVLMASGPVMDPEGQDDGALTKKPGLALNAAYEAKHGPNSRSQFAGHSYDAFEI 313 Query: 315 MKRVIPVALKTAKPGTPEFREAIRKAFISEKEIVASQGVYNWTEKDRYGLDDRSRILLTV 374 +KRVIPVALKTAKPGTPEFR+AIR+A +SEKE+ A+QGVYN+TEKDRYGLDDR+RI+LTV Sbjct: 314 LKRVIPVALKTAKPGTPEFRDAIRQALLSEKELAATQGVYNFTEKDRYGLDDRARIILTV 373 Query: 375 KGGKYVPA 382 K GKYV A Sbjct: 374 KNGKYVAA 381 >ref|YP_001203119.1| branched chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74882.1| Putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transport protein [Bradyrhizobium sp. ORS 278] Length = 386 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 318/382 (83%), Positives = 343/382 (89%), Gaps = 2/382 (0%) Query: 1 MRKATLAAAALAAAIALPGAPAQAQTNEITIGITISTTGPAAALGIPERNALDFVPKEIG 60 MRKA LAAA + A +A APA AQT+EITIGIT +TTGP AALGIPERNAL+FVPKEIG Sbjct: 6 MRKAYLAAAGVIAMLA--SAPALAQTSEITIGITTTTTGPGAALGIPERNALEFVPKEIG 63 Query: 61 GVPLKLIVLDDGGDPTAATTNTRRFVTESKADIIMGSCITPTTIAVSTVANEAGIPHLGL 120 GVPLK+IVLDDGGDPT ATTN RRFVTESKADIIMGS +TP TIAVS VANEAGIPH GL Sbjct: 64 GVPLKVIVLDDGGDPTTATTNARRFVTESKADIIMGSALTPPTIAVSNVANEAGIPHFGL 123 Query: 121 APFPINDARAKWSVDLPQSIPIMGKVLYEHMKAHNIKTVGYIGYLDSYGDLWVNDFKAQA 180 APFP+ R KWSV +PQ +PIMGKVLYEHMKAHNIKTVGYIGY DSYGDLW ND K QA Sbjct: 124 APFPVTPERTKWSVVMPQPVPIMGKVLYEHMKAHNIKTVGYIGYSDSYGDLWFNDLKNQA 183 Query: 181 VPMGLTMTDEERFARPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALRERGYKGLI 240 VPMG+T+ DEERFARPDTSV GQVLKLVAANPDAILVGASGTAAALPQT LRERGY GLI Sbjct: 184 VPMGITIADEERFARPDTSVTGQVLKLVAANPDAILVGASGTAAALPQTELRERGYTGLI 243 Query: 241 YQTHGAASMDFIRIAGAAAEGVIMSAGPIMSPETQPDSALTKKPGLALNTAYEAKYGANS 300 YQTHGAASMDFIRIAG AAEGVIM++GP+MSPETQ DSALTKKPGL LN AYEAKYG NS Sbjct: 244 YQTHGAASMDFIRIAGKAAEGVIMASGPVMSPETQDDSALTKKPGLELNKAYEAKYGPNS 303 Query: 301 RSQFAGHSYDAFEVMKRVIPVALKTAKPGTPEFREAIRKAFISEKEIVASQGVYNWTEKD 360 RSQFAGHS+DAFE++KRVIPVALKTAKPGTPEFREAIR+A +SEK++ ASQGVYN+TEKD Sbjct: 304 RSQFAGHSFDAFEILKRVIPVALKTAKPGTPEFREAIRQALLSEKDLAASQGVYNFTEKD 363 Query: 361 RYGLDDRSRILLTVKGGKYVPA 382 R GLDDR+RI+LTVK GKYVPA Sbjct: 364 RSGLDDRARIILTVKDGKYVPA 385 >ref|YP_001242878.1| putative branched-chain amino acid transport protein [Bradyrhizobium sp. BTAi1] gb|ABQ38972.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 381 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 317/382 (82%), Positives = 342/382 (89%), Gaps = 2/382 (0%) Query: 1 MRKATLAAAALAAAIALPGAPAQAQTNEITIGITISTTGPAAALGIPERNALDFVPKEIG 60 MRKA LAAA + A +A APA AQT+EITIGIT +TTGP AALGIPERNAL+FVPKEIG Sbjct: 1 MRKAYLAAAGVIAMLA--SAPALAQTSEITIGITTTTTGPGAALGIPERNALEFVPKEIG 58 Query: 61 GVPLKLIVLDDGGDPTAATTNTRRFVTESKADIIMGSCITPTTIAVSTVANEAGIPHLGL 120 GVPLK+IVLDDGGDPT ATTN RRFVTESKADIIMGS +TP TIAVS VANEAGIPH GL Sbjct: 59 GVPLKVIVLDDGGDPTTATTNARRFVTESKADIIMGSALTPPTIAVSNVANEAGIPHFGL 118 Query: 121 APFPINDARAKWSVDLPQSIPIMGKVLYEHMKAHNIKTVGYIGYLDSYGDLWVNDFKAQA 180 APFP+ R KWSV +PQ +PIMGKVLYEHMKAHNIKTVGYIGY DSYGDLW ND K Q Sbjct: 119 APFPVTPERMKWSVVMPQPVPIMGKVLYEHMKAHNIKTVGYIGYSDSYGDLWFNDLKNQG 178 Query: 181 VPMGLTMTDEERFARPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALRERGYKGLI 240 VPMG+T+ DEERFARPDTSV GQVLKLVAANPDAILVGASGTAAALPQT LRERGY+GLI Sbjct: 179 VPMGITIVDEERFARPDTSVTGQVLKLVAANPDAILVGASGTAAALPQTELRERGYQGLI 238 Query: 241 YQTHGAASMDFIRIAGAAAEGVIMSAGPIMSPETQPDSALTKKPGLALNTAYEAKYGANS 300 YQTHGAASMDFIRIAG AAEGVIM++GP+MSPETQ DSALTKKPGL LN AYE KYG NS Sbjct: 239 YQTHGAASMDFIRIAGKAAEGVIMASGPVMSPETQDDSALTKKPGLELNKAYEGKYGPNS 298 Query: 301 RSQFAGHSYDAFEVMKRVIPVALKTAKPGTPEFREAIRKAFISEKEIVASQGVYNWTEKD 360 RSQFAGHSYDAFE++KRVIPVALKTAKPGTPEFREAIR+A +SEK++ ASQGVYN+TEKD Sbjct: 299 RSQFAGHSYDAFEILKRVIPVALKTAKPGTPEFREAIRQALLSEKDLAASQGVYNFTEKD 358 Query: 361 RYGLDDRSRILLTVKGGKYVPA 382 R GLDDR+RI+LTVK GKYVPA Sbjct: 359 RSGLDDRARIILTVKDGKYVPA 380 >ref|NP_774488.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53113.1| blr7848 [Bradyrhizobium japonicum USDA 110] Length = 383 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 296/355 (83%), Positives = 322/355 (90%) Query: 25 QTNEITIGITISTTGPAAALGIPERNALDFVPKEIGGVPLKLIVLDDGGDPTAATTNTRR 84 QT+EITIGIT +TTGP AALGIPERNAL+FVPKEIGGVPLK+IVLDDGGDPT ATTN RR Sbjct: 25 QTSEITIGITTTTTGPGAALGIPERNALEFVPKEIGGVPLKVIVLDDGGDPTTATTNARR 84 Query: 85 FVTESKADIIMGSCITPTTIAVSTVANEAGIPHLGLAPFPINDARAKWSVDLPQSIPIMG 144 FVTESKADIIMGS +TP TIAVS VANEAGIPH GLAPFPI R KWSV +PQ IPI+G Sbjct: 85 FVTESKADIIMGSALTPPTIAVSNVANEAGIPHFGLAPFPITPERMKWSVAMPQPIPIVG 144 Query: 145 KVLYEHMKAHNIKTVGYIGYLDSYGDLWVNDFKAQAVPMGLTMTDEERFARPDTSVAGQV 204 KVLY+HMK+ +KT+GYIGY DSYGDLW ND KAQAVPMG+T+ DEERFARPDTSV GQV Sbjct: 145 KVLYDHMKSKGVKTLGYIGYSDSYGDLWFNDLKAQAVPMGMTIVDEERFARPDTSVTGQV 204 Query: 205 LKLVAANPDAILVGASGTAAALPQTALRERGYKGLIYQTHGAASMDFIRIAGAAAEGVIM 264 LKLVAANPDAILVGASGTAAALPQT LRERGY+GLIYQTHGAASMDFIRIAG AAEGV+M Sbjct: 205 LKLVAANPDAILVGASGTAAALPQTELRERGYQGLIYQTHGAASMDFIRIAGKAAEGVLM 264 Query: 265 SAGPIMSPETQPDSALTKKPGLALNTAYEAKYGANSRSQFAGHSYDAFEVMKRVIPVALK 324 ++GP+M PE QPD A TKKPGLALN+AYE KYG NSRSQFAGHSYDAFE++KRVIP ALK Sbjct: 265 ASGPVMDPEDQPDEAATKKPGLALNSAYEGKYGPNSRSQFAGHSYDAFEILKRVIPTALK 324 Query: 325 TAKPGTPEFREAIRKAFISEKEIVASQGVYNWTEKDRYGLDDRSRILLTVKGGKY 379 TAKPGTPEFREAIR+A +SEKE+ ASQGVYN+TEKDRYGLD+RSRILLTVK GKY Sbjct: 325 TAKPGTPEFREAIRQALLSEKELAASQGVYNFTEKDRYGLDERSRILLTVKNGKY 379 >ref|YP_001990989.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] gb|ACF00514.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 385 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 305/382 (79%), Positives = 335/382 (87%), Gaps = 2/382 (0%) Query: 1 MRKATLAAAALAAAIALPG--APAQAQTNEITIGITISTTGPAAALGIPERNALDFVPKE 58 M K L+A A+A A+ALPG A A+TNEITIGIT++TTGPAAALGIPERNAL+FV KE Sbjct: 1 MPKFKLSATAIAVALALPGLSGAALAETNEITIGITVTTTGPAAALGIPERNALEFVAKE 60 Query: 59 IGGVPLKLIVLDDGGDPTAATTNTRRFVTESKADIIMGSCITPTTIAVSTVANEAGIPHL 118 IGG PLKLIVLDDGGDPTAATTN RRFVTESKAD+IMGS +TP T+AVS VANEA +PH+ Sbjct: 61 IGGHPLKLIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPTVAVSNVANEAQVPHI 120 Query: 119 GLAPFPINDARAKWSVDLPQSIPIMGKVLYEHMKAHNIKTVGYIGYLDSYGDLWVNDFKA 178 LAP PI RAKWSV +PQ IPIMGKVLYEHMK +NIKTVGYIGY DSYGDLW ND K Sbjct: 121 ALAPLPITPERAKWSVAMPQPIPIMGKVLYEHMKKNNIKTVGYIGYSDSYGDLWFNDLKK 180 Query: 179 QAVPMGLTMTDEERFARPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTALRERGYKG 238 Q MGL + EERFARPDTSVAGQVLKLVAANPDAILVGASGTAAALPQT+LRERGYKG Sbjct: 181 QGEAMGLKIVAEERFARPDTSVAGQVLKLVAANPDAILVGASGTAAALPQTSLRERGYKG 240 Query: 239 LIYQTHGAASMDFIRIAGAAAEGVIMSAGPIMSPETQPDSALTKKPGLALNTAYEAKYGA 298 LIYQTHGAASMDFIRIAG +AEGV+M++GP+M PE Q DSALTKKPGL LNTAYEAKYG Sbjct: 241 LIYQTHGAASMDFIRIAGKSAEGVLMASGPVMDPEGQDDSALTKKPGLELNTAYEAKYGP 300 Query: 299 NSRSQFAGHSYDAFEVMKRVIPVALKTAKPGTPEFREAIRKAFISEKEIVASQGVYNWTE 358 NSRSQFA HS+DAF+V++RV+PVALKTAKPGT EFREAIRKA +SEK+I ASQGVY++TE Sbjct: 301 NSRSQFAAHSFDAFKVLERVVPVALKTAKPGTQEFREAIRKALVSEKDIAASQGVYSFTE 360 Query: 359 KDRYGLDDRSRILLTVKGGKYV 380 DRYGLDDRSRILLTVK GKYV Sbjct: 361 TDRYGLDDRSRILLTVKDGKYV 382