BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0010.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773718.1| hemin ABC transporter permease protein [Bradyrh... 507 e-141 ref|YP_531844.1| transport system permease [Rhodopseudomonas pal... 478 e-133 ref|YP_782070.1| transport system permease [Rhodopseudomonas pal... 473 e-131 ref|YP_318929.1| ABC-type Fe3+-siderophore transport system perm... 468 e-129 ref|YP_483790.1| transport system permease protein [Rhodopseudom... 451 e-124 >ref|NP_773718.1| hemin ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] emb|CAC38744.1| HmuU protein [Bradyrhizobium japonicum] dbj|BAC52343.1| hemin ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 363 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 278/366 (75%), Positives = 314/366 (85%), Gaps = 3/366 (0%) Query: 1 MSVLADRRGRAKQRRAGMSLRPAATLTLLCLLAALAATALVALTVGAAGIPMARLPAALG 60 MSV R+ +R AG R +A+ + LLA L ATA+VALTVGAAGIP++RLPAALG Sbjct: 1 MSVAIGTEARSLRRSAG---RRSASFAIPLLLAVLTATAIVALTVGAAGIPLSRLPAALG 57 Query: 61 LLADSVANPQLARDQLVVWSIRIPRIAAAAMVGGLLAVSGAIMQGLFRNPLADPALVGVS 120 +++ + A+ ARDQLV+WSIRIPRI A AMVGGLLA +GAIMQGLFRNPLADPALVGVS Sbjct: 58 VMSSTTADAMTARDQLVLWSIRIPRIVATAMVGGLLAAAGAIMQGLFRNPLADPALVGVS 117 Query: 121 SGGAFAAAAAIVFTDSHLGESLRFLQHQLLPIAAFAGSLITTIVLYGIASRGGRTSIAIF 180 SGGA AAA+AIVFTDS GE+LR LQ +LLP+AAFAGSL TT +LYGI+SR GRTSIAIF Sbjct: 118 SGGALAAASAIVFTDSRFGETLRVLQTELLPLAAFAGSLATTAILYGISSRAGRTSIAIF 177 Query: 181 LLAGLAIAAIANAGIGLLVFVADDRQLRDITFWLLGSLSGATWSKLTALAPVLAVALTAC 240 LLAG+AI AI NAGIGLLVF+ADDRQLRDITFWLLGS+SGATW+K LAP+L + L AC Sbjct: 178 LLAGVAITAITNAGIGLLVFIADDRQLRDITFWLLGSMSGATWTKAAVLAPILVIGLAAC 237 Query: 241 LSIARGLDVLVLGEAEAFHSGVDVERLKRISIVLVSAMTGVAVSVCGVVGFVGIVVPHLL 300 I RGLD+LVLGEA+AFH GVDVERLKRISIV+VSAMTGVAVS+ GV+GFVGIVVPHLL Sbjct: 238 AFIGRGLDLLVLGEADAFHGGVDVERLKRISIVMVSAMTGVAVSISGVIGFVGIVVPHLL 297 Query: 301 RLVIGPAHRLLLPASALLGAILLVGADTVARTIVAPAEMPIGILTAAIGAPFFLAMLLRQ 360 RLVIGPAHRLLLPAS LLGAIL+VGADT+ARTIVAPAEMPIGILTAA+GAP FL +LLRQ Sbjct: 298 RLVIGPAHRLLLPASVLLGAILMVGADTLARTIVAPAEMPIGILTAAVGAPVFLGILLRQ 357 Query: 361 RSLVSL 366 R L SL Sbjct: 358 RGLASL 363 >ref|YP_531844.1| transport system permease [Rhodopseudomonas palustris BisB18] gb|ABD87525.1| transport system permease protein [Rhodopseudomonas palustris BisB18] Length = 365 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 278/355 (78%), Positives = 315/355 (88%) Query: 12 KQRRAGMSLRPAATLTLLCLLAALAATALVALTVGAAGIPMARLPAALGLLADSVANPQL 71 + R+ +LRP+A L L LLAAL ATAL+ALTVGAAGIP++RLPAALG+ N Sbjct: 11 RSERSTRALRPSAILILSTLLAALLATALIALTVGAAGIPLSRLPAALGIAEPGSGNTLA 70 Query: 72 ARDQLVVWSIRIPRIAAAAMVGGLLAVSGAIMQGLFRNPLADPALVGVSSGGAFAAAAAI 131 RDQLV+WSIR+PRI AAAMVG LLAV+GA+MQGLFRNPLADPALVGVSSGGAFAAA AI Sbjct: 71 VRDQLVLWSIRVPRIVAAAMVGSLLAVAGALMQGLFRNPLADPALVGVSSGGAFAAATAI 130 Query: 132 VFTDSHLGESLRFLQHQLLPIAAFAGSLITTIVLYGIASRGGRTSIAIFLLAGLAIAAIA 191 V TDS LG LRF+Q++LLPIAAF GSL TT++LY IASR GRTSIA+FLLAGLAIAAIA Sbjct: 131 VITDSALGAQLRFMQNELLPIAAFVGSLATTMILYSIASRQGRTSIAMFLLAGLAIAAIA 190 Query: 192 NAGIGLLVFVADDRQLRDITFWLLGSLSGATWSKLTALAPVLAVALTACLSIARGLDVLV 251 NAGIG+LV+VADDRQLRDITFW+LGSLSGATW+K +APVLA+AL C IAR LD+LV Sbjct: 191 NAGIGVLVYVADDRQLRDITFWMLGSLSGATWAKTATIAPVLAIALLVCAVIARRLDLLV 250 Query: 252 LGEAEAFHSGVDVERLKRISIVLVSAMTGVAVSVCGVVGFVGIVVPHLLRLVIGPAHRLL 311 LGE+EAFHSGVDVERLKR+SIVL+SAMTGVAV++CGVVGF+GI+VPHLLRLVIGP+HRLL Sbjct: 251 LGESEAFHSGVDVERLKRLSIVLISAMTGVAVAICGVVGFIGIIVPHLLRLVIGPSHRLL 310 Query: 312 LPASALLGAILLVGADTVARTIVAPAEMPIGILTAAIGAPFFLAMLLRQRSLVSL 366 LPASALLGA+LLVGADT+ART+VAPAEMPIGILTAAIGAPFFLAMLLRQR L+ L Sbjct: 311 LPASALLGAVLLVGADTLARTLVAPAEMPIGILTAAIGAPFFLAMLLRQRGLIGL 365 >ref|YP_782070.1| transport system permease [Rhodopseudomonas palustris BisA53] gb|ABJ07090.1| transport system permease protein [Rhodopseudomonas palustris BisA53] Length = 364 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 271/340 (79%), Positives = 305/340 (89%), Gaps = 2/340 (0%) Query: 28 LLC-LLAALAATALVALTVGAAGIPMARLPAALGLLADSVANPQLARDQLVVWSIRIPRI 86 +LC LLAAL +L+ALTVGAAGIP++RLPAALGL + S N Q RDQLV+WSIRIPRI Sbjct: 26 ILCGLLAALVGASLIALTVGAAGIPLSRLPAALGLESSS-GNSQAVRDQLVLWSIRIPRI 84 Query: 87 AAAAMVGGLLAVSGAIMQGLFRNPLADPALVGVSSGGAFAAAAAIVFTDSHLGESLRFLQ 146 A AMVG LLAV+GA+MQGLFRNPLADPALVGVSSGGAFAAAAAIV TDS +G LRF+Q Sbjct: 85 VATAMVGSLLAVAGALMQGLFRNPLADPALVGVSSGGAFAAAAAIVITDSAVGVHLRFMQ 144 Query: 147 HQLLPIAAFAGSLITTIVLYGIASRGGRTSIAIFLLAGLAIAAIANAGIGLLVFVADDRQ 206 ++LLPIAAF GSL TT++LY IASR GRTSIA+FLLAGLAIAAIANAGIG+LV+VADDRQ Sbjct: 145 NELLPIAAFLGSLATTMILYSIASREGRTSIAVFLLAGLAIAAIANAGIGILVYVADDRQ 204 Query: 207 LRDITFWLLGSLSGATWSKLTALAPVLAVALTACLSIARGLDVLVLGEAEAFHSGVDVER 266 LRDITFW++GSLSGA W+K +APVLA+AL+ C+ IAR D+LVLGE+EAFHSGVDVER Sbjct: 205 LRDITFWMMGSLSGANWAKTATIAPVLAIALSVCVLIARRFDLLVLGESEAFHSGVDVER 264 Query: 267 LKRISIVLVSAMTGVAVSVCGVVGFVGIVVPHLLRLVIGPAHRLLLPASALLGAILLVGA 326 LKRISIVL+SAMTGVAV++CGVVGF+GI+VPHLLRLVIGP HRLLLPASA LGAILLVGA Sbjct: 265 LKRISIVLISAMTGVAVAICGVVGFIGIIVPHLLRLVIGPGHRLLLPASACLGAILLVGA 324 Query: 327 DTVARTIVAPAEMPIGILTAAIGAPFFLAMLLRQRSLVSL 366 DT+ARTIVAPAEMPIGILTAAIGAPFFL MLLRQR L+ L Sbjct: 325 DTLARTIVAPAEMPIGILTAAIGAPFFLVMLLRQRGLIGL 364 >ref|YP_318929.1| ABC-type Fe3+-siderophore transport system permease component [Nitrobacter winogradskyi Nb-255] gb|ABA05577.1| ABC-type Fe3+-siderophore transport system permease component [Nitrobacter winogradskyi Nb-255] Length = 365 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 273/361 (75%), Positives = 309/361 (85%) Query: 6 DRRGRAKQRRAGMSLRPAATLTLLCLLAALAATALVALTVGAAGIPMARLPAALGLLADS 65 D G A+ R S RPA TL CLL AL+ A+ A+T+GAAGIP+ R+P ALGL Sbjct: 5 DSIGNAESSRGSASARPAPTLLFGCLLVALSGVAIAAVTMGAAGIPLGRVPVALGLWTSE 64 Query: 66 VANPQLARDQLVVWSIRIPRIAAAAMVGGLLAVSGAIMQGLFRNPLADPALVGVSSGGAF 125 A LARDQLV+WSIRIPRI AAA+VGGLLA SGAIMQGLFRNPLADPALVGVSSGGAF Sbjct: 65 QAGALLARDQLVLWSIRIPRILAAAVVGGLLATSGAIMQGLFRNPLADPALVGVSSGGAF 124 Query: 126 AAAAAIVFTDSHLGESLRFLQHQLLPIAAFAGSLITTIVLYGIASRGGRTSIAIFLLAGL 185 AAA+AIV DS G++ RF+Q+ +LP+AAF GSL+TT VLYGIASR GRTSIA+FLLAGL Sbjct: 125 AAASAIVLIDSSYGDAFRFMQNAILPLAAFLGSLVTTFVLYGIASRMGRTSIALFLLAGL 184 Query: 186 AIAAIANAGIGLLVFVADDRQLRDITFWLLGSLSGATWSKLTALAPVLAVALTACLSIAR 245 AIAAIANAG+GLLVF+ADDRQLRDITFW+LGSLSGATWSK +APVL + + AC I R Sbjct: 185 AIAAIANAGLGLLVFIADDRQLRDITFWMLGSLSGATWSKAVTIAPVLVIGVFACFRIGR 244 Query: 246 GLDVLVLGEAEAFHSGVDVERLKRISIVLVSAMTGVAVSVCGVVGFVGIVVPHLLRLVIG 305 GLD+LVLGE+EAFHSGV+VERLK+ SIVL+SAMTGVAVS+CGVVGF+GIVVPHLLRL+IG Sbjct: 245 GLDLLVLGESEAFHSGVNVERLKQASIVLISAMTGVAVSICGVVGFIGIVVPHLLRLMIG 304 Query: 306 PAHRLLLPASALLGAILLVGADTVARTIVAPAEMPIGILTAAIGAPFFLAMLLRQRSLVS 365 P HR+LLPASALLGAIL+VGADT+ARTIVAPAEMPIGILTAAIGAPFFLA+LLRQR L Sbjct: 305 PGHRMLLPASALLGAILVVGADTLARTIVAPAEMPIGILTAAIGAPFFLAILLRQRGLAG 364 Query: 366 L 366 L Sbjct: 365 L 365 >ref|YP_483790.1| transport system permease protein [Rhodopseudomonas palustris HaA2] gb|ABD04879.1| transport system permease protein [Rhodopseudomonas palustris HaA2] Length = 361 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/354 (74%), Positives = 304/354 (85%) Query: 13 QRRAGMSLRPAATLTLLCLLAALAATALVALTVGAAGIPMARLPAALGLLADSVANPQLA 72 +RR S RP + +TL LL L +ALTVGAAGIP++RLPAALGLL + A P A Sbjct: 8 RRRVARSFRPRSGVTLAVLLVLLLICLALALTVGAAGIPLSRLPAALGLLPAADAGPMAA 67 Query: 73 RDQLVVWSIRIPRIAAAAMVGGLLAVSGAIMQGLFRNPLADPALVGVSSGGAFAAAAAIV 132 RDQ+V+WSIR+PRI AA+VG LLA SGA+MQGLFRNPLADPALVGVSSGGAFAAA++IV Sbjct: 68 RDQMVLWSIRLPRILTAAIVGSLLAASGALMQGLFRNPLADPALVGVSSGGAFAAASSIV 127 Query: 133 FTDSHLGESLRFLQHQLLPIAAFAGSLITTIVLYGIASRGGRTSIAIFLLAGLAIAAIAN 192 D LG++LRFLQ LLP+AAFAGSL+TTI LY IASR GRTSIA+FLLAGLAIAAIAN Sbjct: 128 LLDHALGDNLRFLQDHLLPVAAFAGSLVTTIALYRIASRAGRTSIALFLLAGLAIAAIAN 187 Query: 193 AGIGLLVFVADDRQLRDITFWLLGSLSGATWSKLTALAPVLAVALTACLSIARGLDVLVL 252 AGIG+LV++ADDRQLRDITFW++GSLSGA W+K ++ A VL +AL + +AR LD+LVL Sbjct: 188 AGIGVLVYLADDRQLRDITFWMMGSLSGANWAKASSTALVLLIALAVFVKVARHLDLLVL 247 Query: 253 GEAEAFHSGVDVERLKRISIVLVSAMTGVAVSVCGVVGFVGIVVPHLLRLVIGPAHRLLL 312 GE+EAFH+GVDVERLKR+SIVLVS MTGVAVSVCGV+GFVGIVVPHLLRL+IGP+HRLLL Sbjct: 248 GESEAFHTGVDVERLKRLSIVLVSLMTGVAVSVCGVIGFVGIVVPHLLRLLIGPSHRLLL 307 Query: 313 PASALLGAILLVGADTVARTIVAPAEMPIGILTAAIGAPFFLAMLLRQRSLVSL 366 PASA LGA++LV ADTVARTIVAPAEMPIGILTAAIGAPFFL +LLRQR LV L Sbjct: 308 PASACLGAVMLVAADTVARTIVAPAEMPIGILTAAIGAPFFLVILLRQRKLVGL 361