BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0244.0006.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_531845.1| periplasmic binding protein [Rhodopseudomonas p...   132   2e-29
ref|YP_782069.1| periplasmic binding protein [Rhodopseudomonas p...   126   8e-28
ref|NP_773717.1| hemin ABC transporter hemin-binding protein [Br...   126   8e-28
ref|YP_318930.1| periplasmic binding protein [Nitrobacter winogr...   122   2e-26
ref|YP_004109710.1| periplasmic-binding protein [Rhodopseudomona...   120   5e-26

>ref|YP_531845.1| periplasmic binding protein [Rhodopseudomonas palustris BisB18]
 gb|ABD87526.1| periplasmic binding protein [Rhodopseudomonas palustris BisB18]
          Length = 329

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 70/78 (89%)

Query: 1   VGHAMGADPRAACLTTAVESDLAQLRALRARVTKPARVMFVMSLLNGRAMAAGHKTAADE 60
           VGHAMGAD  AACLT AV  DLA+LR LRARVTKP RVMFVM+L+NG+AMAAGH TAADE
Sbjct: 157 VGHAMGADRGAACLTAAVSGDLAKLRELRARVTKPVRVMFVMALVNGQAMAAGHNTAADE 216

Query: 61  IIRLAGGVNAIDGYDGYK 78
           II+LAGG+NA+DGYDGYK
Sbjct: 217 IIKLAGGINAVDGYDGYK 234


>ref|YP_782069.1| periplasmic binding protein [Rhodopseudomonas palustris BisA53]
 gb|ABJ07089.1| periplasmic binding protein [Rhodopseudomonas palustris BisA53]
          Length = 311

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 70/81 (86%)

Query: 1   VGHAMGADPRAACLTTAVESDLAQLRALRARVTKPARVMFVMSLLNGRAMAAGHKTAADE 60
           VGHAMGAD  AACLT AV  DLA+LRALR++V KPARVMFVMSL+NG+AMAAG  TAADE
Sbjct: 139 VGHAMGADRGAACLTAAVTDDLAKLRALRSKVAKPARVMFVMSLVNGQAMAAGRNTAADE 198

Query: 61  IIRLAGGVNAIDGYDGYKPVT 81
           II LAGG+NAIDGY+GYK + 
Sbjct: 199 IIMLAGGLNAIDGYEGYKKIN 219


>ref|NP_773717.1| hemin ABC transporter hemin-binding protein [Bradyrhizobium
           japonicum USDA 110]
 emb|CAC38745.1| HmuT protein [Bradyrhizobium japonicum]
 dbj|BAC52342.1| hemin ABC transporter hemin-binding protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 317

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 66/78 (84%)

Query: 1   VGHAMGADPRAACLTTAVESDLAQLRALRARVTKPARVMFVMSLLNGRAMAAGHKTAADE 60
           VGHAMG D RA CL+ AV +DLAQLRALRA+V KP RVMFVMSL NGRAM AGHKTAADE
Sbjct: 145 VGHAMGVDARAECLSAAVGADLAQLRALRAKVKKPVRVMFVMSLQNGRAMVAGHKTAADE 204

Query: 61  IIRLAGGVNAIDGYDGYK 78
           II+LAG  NA+D YDGYK
Sbjct: 205 IIQLAGAANAVDDYDGYK 222


>ref|YP_318930.1| periplasmic binding protein [Nitrobacter winogradskyi Nb-255]
 gb|ABA05578.1| periplasmic binding protein [Nitrobacter winogradskyi Nb-255]
          Length = 288

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 68/81 (83%)

Query: 1   VGHAMGADPRAACLTTAVESDLAQLRALRARVTKPARVMFVMSLLNGRAMAAGHKTAADE 60
           VGHA+ AD RAACLT AV  DL +L+ LRAR+ KP RVMFVMSL+NGRAMAAG  TAADE
Sbjct: 116 VGHALRADARAACLTAAVAHDLTRLKGLRARIDKPVRVMFVMSLVNGRAMAAGRHTAADE 175

Query: 61  IIRLAGGVNAIDGYDGYKPVT 81
           II+L+GG+NAI  Y+GYKP++
Sbjct: 176 IIKLSGGINAITEYEGYKPIS 196


>ref|YP_004109710.1| periplasmic-binding protein [Rhodopseudomonas palustris DX-1]
 gb|ADU44977.1| periplasmic binding protein [Rhodopseudomonas palustris DX-1]
          Length = 325

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 72/101 (71%), Gaps = 2/101 (1%)

Query: 1   VGHAMGADPRAACLTTAVESDLAQLRALRARVTKPARVMFVMSLLNGRAMAAGHKTAADE 60
           +GHAMGAD  AACLT AV  D A L  LRA +TKP RVMFVMSL+NG+AMAAG  TAAD 
Sbjct: 153 IGHAMGADTAAACLTAAVGDDFATLHKLRAAITKPVRVMFVMSLVNGQAMAAGRNTAADS 212

Query: 61  IIRLAGGVNAIDGYDGYKPVTVGTVAIGVRKSDTELLAKIN 101
           II LAGGVNAIDGYDGYK  ++   AI   + D  L  K N
Sbjct: 213 IIALAGGVNAIDGYDGYK--SINDEAIVAARPDVVLTIKRN 251