BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0005.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768864.1| ABC transporter amino acid-binding protein [Bra... 338 9e-91 ref|YP_002497669.1| family 3 extracellular solute-binding protei... 314 1e-83 ref|YP_001770402.1| extracellular solute-binding protein [Methyl... 292 5e-77 ref|YP_001753066.1| extracellular solute-binding protein [Methyl... 285 7e-75 gb|EFV83947.1| amino acid-binding periplasmic protein [Achromoba... 267 1e-69 >ref|NP_768864.1| ABC transporter amino acid-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47489.1| ABC transporter amino acid-binding protein [Bradyrhizobium japonicum USDA 110] Length = 254 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 174/225 (77%), Positives = 193/225 (85%) Query: 1 MSFQRLVQAAVAALALALTAPSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEI 60 M+ +R VQAAVAALA+A P+ AQQVLKVGSTPTGIPFTFLDTKTN+IQGIMVDL TEI Sbjct: 1 MALKRFVQAAVAALAIAGVVPASAQQVLKVGSTPTGIPFTFLDTKTNTIQGIMVDLITEI 60 Query: 61 GKDAGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVP 120 GKDAG VQIEPM FSALIPSLT++KIDIIAAAMF TA RKEV+DFSDP+YTYGEGLVVP Sbjct: 61 GKDAGLNVQIEPMSFSALIPSLTSSKIDIIAAAMFITAPRKEVVDFSDPIYTYGEGLVVP 120 Query: 121 KADTKAYASQEDLKGTVVGAQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAG 180 K DTKAYA+Q+DLKG VGAQVGTAFVDALKK+GLF++VK YDTIPDILRDVN GRLKAG Sbjct: 121 KNDTKAYATQDDLKGETVGAQVGTAFVDALKKSGLFADVKAYDTIPDILRDVNTGRLKAG 180 Query: 181 FADYPILAYNLQQGNFADVRLVDGYKPVPRSSMRSASRTASPASM 225 +ADYPILAYNL+QG F +VRLVD YKPV S+ R A + Sbjct: 181 YADYPILAYNLKQGGFPEVRLVDSYKPVTVGSVGIGVRKGDSALL 225 >ref|YP_002497669.1| family 3 extracellular solute-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL57366.1| extracellular solute-binding protein family 3 [Methylobacterium nodulans ORS 2060] Length = 255 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 175/205 (85%) Query: 3 FQRLVQAAVAALALALTAPSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGK 62 +RL+QAA A LAL L P+ AQ LKVGSTPTGIPFTFLDTKTN+IQG+MVD+ T +G+ Sbjct: 1 MKRLIQAACATLALGLAGPAVAQTTLKVGSTPTGIPFTFLDTKTNTIQGVMVDVITAVGR 60 Query: 63 DAGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKA 122 +AGF VQ+EP+QFS LI +LTA KIDII+AAMF T RKEVIDFS+PVYTYGEG++VPK+ Sbjct: 61 EAGFAVQVEPLQFSTLIAALTAKKIDIISAAMFITPPRKEVIDFSEPVYTYGEGMIVPKS 120 Query: 123 DTKAYASQEDLKGTVVGAQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFA 182 DT+ Y + DLKG VG QVGTAFV+ LKK+GLF+EVK+YDTIPDILRDVNAGRLKAGFA Sbjct: 121 DTREYVTFADLKGETVGVQVGTAFVEPLKKSGLFAEVKIYDTIPDILRDVNAGRLKAGFA 180 Query: 183 DYPILAYNLQQGNFADVRLVDGYKP 207 D PILAYNL+QG F +VRLV+ YKP Sbjct: 181 DGPILAYNLKQGLFPNVRLVESYKP 205 >ref|YP_001770402.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA17968.1| extracellular solute-binding protein family 3 [Methylobacterium sp. 4-46] Length = 255 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 155/205 (75%), Positives = 174/205 (84%) Query: 3 FQRLVQAAVAALALALTAPSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGK 62 +RLVQAA AALALAL P+GAQ LKVGSTPTGIPFTFLDTKTNSIQG+MVD+ T +G+ Sbjct: 1 MKRLVQAACAALALALAGPAGAQTALKVGSTPTGIPFTFLDTKTNSIQGVMVDVITAVGR 60 Query: 63 DAGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKA 122 +AGFTVQ+EP+QFS LI +L A KIDII+AAMF T RKEVIDFS PVYTYGEG++V K Sbjct: 61 EAGFTVQVEPLQFSTLIAALNAKKIDIISAAMFITPPRKEVIDFSAPVYTYGEGMIVAKG 120 Query: 123 DTKAYASQEDLKGTVVGAQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFA 182 DTK Y DLKG VGAQVGTAFV+ LKK+GLFSEVK+YDTIPDILRDVN+GRLKAGFA Sbjct: 121 DTKDYTGFADLKGETVGAQVGTAFVEPLKKSGLFSEVKIYDTIPDILRDVNSGRLKAGFA 180 Query: 183 DYPILAYNLQQGNFADVRLVDGYKP 207 D PILAYNL+ G F +VRLVD YKP Sbjct: 181 DGPILAYNLKLGLFPNVRLVDSYKP 205 >ref|YP_001753066.1| extracellular solute-binding protein [Methylobacterium radiotolerans JCM 2831] gb|ACB22383.1| extracellular solute-binding protein family 3 [Methylobacterium radiotolerans JCM 2831] Length = 276 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 138/207 (66%), Positives = 166/207 (80%) Query: 12 AALALALTAPSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGKDAGFTVQIE 71 +AL L + + Q LKVGSTPTG+PFTFLDTKTN+IQG+MVDL + K+AGFTV +E Sbjct: 31 SALLLGILGAAVGAQPLKVGSTPTGLPFTFLDTKTNTIQGVMVDLVNAVSKEAGFTVAVE 90 Query: 72 PMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKADTKAYASQE 131 P+QFS LIP+LTA+KIDIIAAAMF T RKEV+ FS PVY+YGEGL+VPK DTK Y S Sbjct: 91 PLQFSTLIPALTASKIDIIAAAMFITPQRKEVVSFSAPVYSYGEGLIVPKTDTKDYTSFA 150 Query: 132 DLKGTVVGAQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFADYPILAYNL 191 DLKG VGAQVGTAFV+ LKK+GLF+EVK+YD IPDI+RDVN+GRLKAGFAD PILAY + Sbjct: 151 DLKGETVGAQVGTAFVEPLKKSGLFNEVKIYDAIPDIIRDVNSGRLKAGFADAPILAYYV 210 Query: 192 QQGNFADVRLVDGYKPVPRSSMRSASR 218 +QG F VRLV+ +KP +S+ + R Sbjct: 211 KQGLFPGVRLVETFKPTVVASVGLSVR 237 >gb|EFV83947.1| amino acid-binding periplasmic protein [Achromobacter xylosoxidans C54] Length = 250 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/218 (58%), Positives = 165/218 (75%), Gaps = 2/218 (0%) Query: 1 MSFQRLVQAAVAALALALTAPSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEI 60 M F+ LV + AAL+ A A AQ VLKVGSTPTG PFTFLDTKTNSI+G+MVD+ + Sbjct: 1 MKFKTLVVSVFAALSTATAAQ--AQTVLKVGSTPTGSPFTFLDTKTNSIEGVMVDIVKAV 58 Query: 61 GKDAGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVP 120 GK+AGF VQIEPM FSALI SLT+ +IDI++AAMF T R++V+ FS+PVY YGEGL+VP Sbjct: 59 GKEAGFEVQIEPMAFSALIGSLTSKRIDIVSAAMFITPQRQQVVSFSEPVYRYGEGLMVP 118 Query: 121 KADTKAYASQEDLKGTVVGAQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAG 180 K+D K Y S D+KG VG QVGTAFV+ ++K+G+F EVK+YD PD++RD NAGR++ G Sbjct: 119 KSDNKEYKSFADMKGMTVGVQVGTAFVEPIQKSGVFKEVKLYDNPPDMMRDANAGRIQGG 178 Query: 181 FADYPILAYNLQQGNFADVRLVDGYKPVPRSSMRSASR 218 F DYPI AY L QGN+ ++++ Y+P S+ A+R Sbjct: 179 FMDYPIAAYILTQGNYPNLKMAQSYQPTVMGSLGLATR 216