BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0004.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768863.1| transcriptional regulator [Bradyrhizobium japon... 290 9e-77 ref|YP_001770401.1| XRE family transcriptional regulator [Methyl... 204 5e-51 ref|YP_001753067.1| XRE family transcriptional regulator [Methyl... 191 4e-47 ref|YP_521518.1| transcriptional regulator [Rhodoferax ferriredu... 143 9e-33 ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp... 137 9e-31 >ref|NP_768863.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47488.1| bll2223 [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 150/189 (79%), Positives = 169/189 (89%), Gaps = 1/189 (0%) Query: 1 MDLAVGRRIRDLRRSKEMSLEVVAARTDLSIGFISQIERGLSSPSLRVLATLADVLGVGI 60 MD+AVGRRIRD+RR ++ SLE VAART LSIGF+SQIERGLSSPSLR LATL+DVLGVG+ Sbjct: 37 MDVAVGRRIRDIRRVRQFSLETVAARTGLSIGFLSQIERGLSSPSLRALATLSDVLGVGM 96 Query: 61 AALFGATPKDDGAGG-VVTREVQRAELKLWRTGISKQLLSPAGSESRLNLFLVHLEPGGN 119 AALFG+ P DGA VVTR +QR ELKLWR+GISKQLLS AGS++RLNLFLVH++PGG+ Sbjct: 97 AALFGSNPSADGASDQVVTRGLQRPELKLWRSGISKQLLSAAGSDNRLNLFLVHIDPGGS 156 Query: 120 TGDEFYTHDGEEAGLVLQGEMTLTVDTETWTLKQGDSFRFASRRPHRFSNPARDAKAMVL 179 GDE YTHDGEEAGLVL GEM LTVD+ETW+LK GDSFRFASRRPHRFSNPA+DAKA+VL Sbjct: 157 AGDELYTHDGEEAGLVLDGEMMLTVDSETWSLKTGDSFRFASRRPHRFSNPAQDAKAVVL 216 Query: 180 WVNCVTAAG 188 WVNCVT AG Sbjct: 217 WVNCVTGAG 225 >ref|YP_001770401.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA17967.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 207 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 111/183 (60%), Positives = 142/183 (77%), Gaps = 2/183 (1%) Query: 2 DLAVGRRIRDLRRSKEMSLEVVAARTDLSIGFISQIERGLSSPSLRVLATLADVLGVGIA 61 DLA+GRR+R LR+++ +SL+ +AART LSIGF+SQ+ERGLSSPSLRVL LAD+L VG+A Sbjct: 23 DLAMGRRLRALRQARGLSLKAIAARTGLSIGFLSQVERGLSSPSLRVLTQLADLLEVGLA 82 Query: 62 ALFGATPKDDGAGGVVTREVQRAELKLWRTGISKQLLSPAGSESRLNLFLVHLEPGGNTG 121 +LFGA P A +VTR +RAEL LWR+GI+KQLL+ G++ L+LFL+ L PG +TG Sbjct: 83 SLFGAAPGP--AEPIVTRPHERAELTLWRSGIAKQLLTRPGADGHLSLFLMRLAPGASTG 140 Query: 122 DEFYTHDGEEAGLVLQGEMTLTVDTETWTLKQGDSFRFASRRPHRFSNPARDAKAMVLWV 181 DE TH GEEAGLVL+G + L V+ +L GDSFRFASRRPHR+ NP+ +A+VLWV Sbjct: 141 DEALTHGGEEAGLVLEGRLALWVEDAALSLAAGDSFRFASRRPHRYGNPSETDEAVVLWV 200 Query: 182 NCV 184 N V Sbjct: 201 NAV 203 >ref|YP_001753067.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB22384.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 105/184 (57%), Positives = 133/184 (72%) Query: 1 MDLAVGRRIRDLRRSKEMSLEVVAARTDLSIGFISQIERGLSSPSLRVLATLADVLGVGI 60 +D AVG+R+R LRR++ +SLE VA+ T LSIGFISQ+ERGLSSPSLRVLA LAD L +GI Sbjct: 16 VDRAVGQRLRGLRRARGLSLEAVASSTGLSIGFISQVERGLSSPSLRVLALLADTLQIGI 75 Query: 61 AALFGATPKDDGAGGVVTREVQRAELKLWRTGISKQLLSPAGSESRLNLFLVHLEPGGNT 120 LF P +V R EL+LWR GI+KQLL+P G ++LF + L+ G +T Sbjct: 76 GGLFEPGPDAPDPDPIVVFRKDRPELQLWRAGITKQLLTPPGGTQGMSLFHMVLKAGAST 135 Query: 121 GDEFYTHDGEEAGLVLQGEMTLTVDTETWTLKQGDSFRFASRRPHRFSNPARDAKAMVLW 180 GDE ++HDGEEAGLVL G +TL V++ T L +GDSFRF SRRPHRFSNP ++ +VLW Sbjct: 136 GDELFSHDGEEAGLVLAGRLTLIVESRTLQLAEGDSFRFESRRPHRFSNPDPRSQTIVLW 195 Query: 181 VNCV 184 VN + Sbjct: 196 VNVL 199 >ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 115/184 (62%), Gaps = 5/184 (2%) Query: 3 LAVGRRIRDLRRSKEMSLEVVAARTDLSIGFISQIERGLSSPSLRVLATLADVLGVGIAA 62 + +G ++R RR K ++L ++ ++ LS+G +SQIERGLSSPSL+ + + LGV ++ Sbjct: 14 MGLGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSW 73 Query: 63 LFGATPKDDGA-GGVVTREVQRAELKLWRTGISKQLLSP-AGSESRLNLFLVHLEPGGNT 120 LF P ++ A G+V R R L L G++K+LLSP G E + ++LV + PGG + Sbjct: 74 LFDNGPLENPAEKGLVVRRGSRRRLDLGTYGVTKELLSPDLGGE--MQIYLVSIRPGGQS 131 Query: 121 GDEFYTHDGEEAGLVLQGEMTLTVDTETWTLKQGDSFRFASRRPHRFSNPARDAKAMVLW 180 G E YTH GEE GLVL G + LTVD L +GDSFRF S HRF+NP +A V+W Sbjct: 132 GPETYTHRGEEGGLVLTGTLELTVDDRIVLLYEGDSFRFRSSLAHRFANPG-TTQANVVW 190 Query: 181 VNCV 184 N + Sbjct: 191 ANSL 194 >ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%) Query: 5 VGRRIRDLRRSKEMSLEVVAARTDLSIGFISQIERGLSSPSLRVLATLADVLGVGIAALF 64 +G R+R+LR++K ++L+ +AA T LSIG++SQ+ER + PS+R L + LGVGI F Sbjct: 13 IGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNVIGKALGVGINWFF 72 Query: 65 GATPKDDGA-GGVVTREVQRAELKLWRTGISKQLLSPAGSESRLNLFLVHLEPGGNTGDE 123 +G G+V R QR L+ + +G+ +LLSP+ S +L + L EPG +G E Sbjct: 73 PGPEDQEGPEAGLVVRAGQRRSLR-FASGLRDELLSPSLS-GQLEMVLTTFEPGAGSGAE 130 Query: 124 FYTHDGEEAGLVLQGEMTLTVDTETWTLKQGDSFRFASRRPHRFSNPARDAKAMVLW 180 Y+H GEEAG + +G++ +TVD T L+ GD+ +F+S RPHR+ NP + +++W Sbjct: 131 LYSHKGEEAGYIAEGQLEVTVDDITVLLQAGDTIQFSSERPHRYHNPG-PKRTVLVW 186