BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0077.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_780608.1| TetR family transcriptional regulator [Rhodopse... 322 3e-86 ref|YP_531530.1| TetR family transcriptional regulator [Rhodopse... 320 9e-86 ref|NP_949114.1| TetR family transcriptional regulator [Rhodopse... 319 2e-85 ref|YP_568945.1| TetR family transcriptional regulator [Rhodopse... 318 4e-85 ref|NP_769499.1| transcriptional regulator [Bradyrhizobium japon... 313 1e-83 >ref|YP_780608.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ05628.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisA53] Length = 233 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 155/217 (71%), Positives = 180/217 (82%), Gaps = 1/217 (0%) Query: 1 LILSAAKRCFARNGFAGTTTKSVAAAAAISEGLLFKHFPSKAALYAEILAEECEADPDLA 60 LIL+AAKRCFAR+GFAGTTTKSVAAAA+ISEGLLFKHFP+K+ALYAEIL EECEADP + Sbjct: 14 LILNAAKRCFARHGFAGTTTKSVAAAASISEGLLFKHFPTKSALYAEILTEECEADPAMV 73 Query: 61 HLLGQEPSTATLVELVQGMVGHFMQLRDAPDQEEAQRMRLMVTSHLDDGEFARLLYDKVG 120 LL EPST TLV LV+GMVGHF+ L DAPDQEE QR+RLM++SHLDDGEFARLLY K+G Sbjct: 74 ELLDLEPSTKTLVALVRGMVGHFLHLADAPDQEETQRLRLMISSHLDDGEFARLLYQKIG 133 Query: 121 KLIGPTFAASLERAIAAGEATKIGDEPLNLFWFAHHTVLMGALTQLPATPCLPYGDAAAA 180 LI P F AS+ERA+ + EA+++G EPLNLFW AHHTV+M AL++LPATPCL Y DA Sbjct: 134 ALIRPLFTASIERAVESEEASRVGREPLNLFWLAHHTVMMTALSRLPATPCLSYVDAVDL 193 Query: 181 ERQLCQFILRGIGLTEAAISTHLGRQ-PSPIAGPSVT 216 ERQ C+FILRGIGL EAAI+ HL R P+ P+ T Sbjct: 194 ERQTCEFILRGIGLKEAAIAAHLDRDMPAGATRPATT 230 >ref|YP_531530.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD87211.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisB18] Length = 233 Score = 320 bits (820), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 176/206 (85%) Query: 1 LILSAAKRCFARNGFAGTTTKSVAAAAAISEGLLFKHFPSKAALYAEILAEECEADPDLA 60 LILSAAKRCFAR+GFAGTTTKSVAAAA+ISEGLLFKHFPSK+ALYAEILAEECEA P + Sbjct: 14 LILSAAKRCFARHGFAGTTTKSVAAAASISEGLLFKHFPSKSALYAEILAEECEAAPAMH 73 Query: 61 HLLGQEPSTATLVELVQGMVGHFMQLRDAPDQEEAQRMRLMVTSHLDDGEFARLLYDKVG 120 LLG EPST TLV LV+GMV HF+ + + PDQE+AQR+RLM++S LDDGEFARLLY KVG Sbjct: 74 GLLGLEPSTQTLVVLVRGMVAHFLHVSEVPDQEDAQRLRLMMSSQLDDGEFARLLYQKVG 133 Query: 121 KLIGPTFAASLERAIAAGEATKIGDEPLNLFWFAHHTVLMGALTQLPATPCLPYGDAAAA 180 LIGP F ASL+RA+ +GEA+++G EPLNLFWFAHHTVLM L++LP TPCL Y DA Sbjct: 134 ALIGPVFTASLDRAVLSGEASRVGREPLNLFWFAHHTVLMAGLSRLPTTPCLSYDDAIDL 193 Query: 181 ERQLCQFILRGIGLTEAAISTHLGRQ 206 ERQ+C+FILRGIGL EAAI+ H+ R Sbjct: 194 ERQICEFILRGIGLNEAAIAAHMDRD 219 >ref|NP_949114.1| TetR family transcriptional regulator [Rhodopseudomonas palustris CGA009] ref|YP_001993269.1| TetR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE29218.1| possible transcriptional regulator, TetR family [Rhodopseudomonas palustris CGA009] gb|ACF02794.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris TIE-1] Length = 233 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 157/220 (71%), Positives = 181/220 (82%) Query: 1 LILSAAKRCFARNGFAGTTTKSVAAAAAISEGLLFKHFPSKAALYAEILAEECEADPDLA 60 LIL AAKRCFARNGFAGTTTKSVAAAA+ISEGLLFKHFPSKAALYAEILA E EADP L Sbjct: 14 LILGAAKRCFARNGFAGTTTKSVAAAASISEGLLFKHFPSKAALYAEILACEREADPALM 73 Query: 61 HLLGQEPSTATLVELVQGMVGHFMQLRDAPDQEEAQRMRLMVTSHLDDGEFARLLYDKVG 120 LLG EPST TLV LV+ MV HF+ D P+QEE QR+RL+V+S LDDGEFARL+Y+KV Sbjct: 74 DLLGAEPSTQTLVVLVREMVEHFLHASDQPEQEEDQRLRLLVSSQLDDGEFARLVYEKVA 133 Query: 121 KLIGPTFAASLERAIAAGEATKIGDEPLNLFWFAHHTVLMGALTQLPATPCLPYGDAAAA 180 LIG TF +SLERA+ AG+A +IG+EP+NLFWFAHHT+LM AL +LP+ PCL YGDAA+ Sbjct: 134 GLIGRTFVSSLERAVEAGDAVRIGNEPMNLFWFAHHTLLMAALARLPSVPCLSYGDAASH 193 Query: 181 ERQLCQFILRGIGLTEAAISTHLGRQPSPIAGPSVTAESA 220 ERQ+C+FILRGIGL EA I+ HL R+ SP + T ESA Sbjct: 194 ERQMCEFILRGIGLNEAVIAAHLDRELSPGRIKAETTESA 233 >ref|YP_568945.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisB5] gb|ABE39044.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 152/220 (69%), Positives = 182/220 (82%) Query: 1 LILSAAKRCFARNGFAGTTTKSVAAAAAISEGLLFKHFPSKAALYAEILAEECEADPDLA 60 LIL AAKRCFARNGFAGTTTKSVA AA+ISEGLLFKHFPSK+ALYAEILA+ECEADP L Sbjct: 14 LILGAAKRCFARNGFAGTTTKSVATAASISEGLLFKHFPSKSALYAEILADECEADPGLI 73 Query: 61 HLLGQEPSTATLVELVQGMVGHFMQLRDAPDQEEAQRMRLMVTSHLDDGEFARLLYDKVG 120 HLL PST TLV +V+ MV +F+ + D P+QEEAQR+RL++TS LDDGEFARL+++KV Sbjct: 74 HLLDLPPSTETLVVVVRNMVAYFLHVSDRPEQEEAQRLRLLITSQLDDGEFARLVFEKVS 133 Query: 121 KLIGPTFAASLERAIAAGEATKIGDEPLNLFWFAHHTVLMGALTQLPATPCLPYGDAAAA 180 LIGP F+ASL+RA+AAGEAT++G +PLNLFWFAHH ++M ALT+LP+ PCL YGDAA Sbjct: 134 GLIGPKFSASLDRAVAAGEATRVGQQPLNLFWFAHHMLVMTALTRLPSPPCLAYGDAADL 193 Query: 181 ERQLCQFILRGIGLTEAAISTHLGRQPSPIAGPSVTAESA 220 ERQ C+FILRGIGL + I+ HL R+ SP + T ESA Sbjct: 194 ERQTCEFILRGIGLNDDVIAAHLDRELSPEQTRAETTESA 233 >ref|NP_769499.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48124.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 156/220 (70%), Positives = 183/220 (83%) Query: 1 LILSAAKRCFARNGFAGTTTKSVAAAAAISEGLLFKHFPSKAALYAEILAEECEADPDLA 60 LIL AAKRCFAR+G+ GTTTKSVAAAAAISE LLFKHFPSKAALYAEIL++ECEADP L Sbjct: 20 LILGAAKRCFARHGYTGTTTKSVAAAAAISEALLFKHFPSKAALYAEILSDECEADPALT 79 Query: 61 HLLGQEPSTATLVELVQGMVGHFMQLRDAPDQEEAQRMRLMVTSHLDDGEFARLLYDKVG 120 LL +EPSTAT+VEL++GMV HF+++ D PD EEAQR+RLM TSHLDDGEFARLLY K+ Sbjct: 80 DLLEREPSTATMVELIRGMVQHFLRIADGPDLEEAQRLRLMATSHLDDGEFARLLYAKIE 139 Query: 121 KLIGPTFAASLERAIAAGEATKIGDEPLNLFWFAHHTVLMGALTQLPATPCLPYGDAAAA 180 KLIG F ASLERA+AAG+A +PLNLFWFAHH+++ ALT+LPATPCL YG A Sbjct: 140 KLIGAVFVASLERAVAAGDARPCTGDPLNLFWFAHHSLMTAALTRLPATPCLAYGKANDL 199 Query: 181 ERQLCQFILRGIGLTEAAISTHLGRQPSPIAGPSVTAESA 220 ERQLC+F+LRGIGL +AAI++HLGR + AG + AESA Sbjct: 200 ERQLCEFLLRGIGLNDAAIASHLGRDQAADAGKTAIAESA 239