BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0076.p (397 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769500.1| hypothetical protein blr2860 [Bradyrhizobium ja... 604 e-171 ref|YP_531531.1| secretion protein HlyD [Rhodopseudomonas palust... 588 e-166 ref|YP_568946.1| secretion protein HlyD [Rhodopseudomonas palust... 580 e-163 ref|YP_780609.1| RND family efflux transporter MFP subunit [Rhod... 580 e-163 ref|YP_001238880.1| putative RND efflux membrane fusion protein ... 578 e-163 >ref|NP_769500.1| hypothetical protein blr2860 [Bradyrhizobium japonicum USDA 110] dbj|BAC48125.1| blr2860 [Bradyrhizobium japonicum USDA 110] Length = 408 Score = 604 bits (1557), Expect = e-171, Method: Compositional matrix adjust. Identities = 301/385 (78%), Positives = 334/385 (86%), Gaps = 1/385 (0%) Query: 1 MNIQTESHISGQPIKEKQAKRPVRMVRWFIIVGLLLALLVGALVGFNAFRSHMIAQFFAN 60 MNI TE ISG+PI +K KRPVR V WF+I+G LL LVG LV FN FR MI QFFAN Sbjct: 13 MNIVTEHKISGEPI-DKAPKRPVRPVLWFVIIGTLLGALVGGLVWFNYFRGQMIKQFFAN 71 Query: 61 NKPPPANVSAVEAKTEVIPNLLTAVGDLVAVHQVNVTTDVPGRITEILFTAGSHVKAGTP 120 NKPPP VSA EAK+EV+PNLLTAVG L AVHQV+V+ DV GR+TEI F GSHV+AG P Sbjct: 72 NKPPPTMVSAAEAKSEVVPNLLTAVGGLAAVHQVDVSADVNGRVTEIKFEPGSHVEAGMP 131 Query: 121 LVQLFDAPEQGDLANYKAQATVGELQLDRAKQLASRQFGPQSTVDTAQAAYDQAKAGIAK 180 LVQLFDAP+QGDLANYKAQATV +L LDRAKQLASRQFGPQ+TVDTAQAAYDQA AGIAK Sbjct: 132 LVQLFDAPDQGDLANYKAQATVAQLSLDRAKQLASRQFGPQATVDTAQAAYDQAMAGIAK 191 Query: 181 TEALISQKLVRAPFEGDLGVRQVEVGQYLTAGTQIVSLTDLSVLYANLTVTEKQSSQIKV 240 TEALISQKLVRAPF GDLG+R+VEVGQYLTAGT IVSLTDLS L+AN TVTEK S +KV Sbjct: 192 TEALISQKLVRAPFSGDLGMRKVEVGQYLTAGTAIVSLTDLSELWANFTVTEKDSGNLKV 251 Query: 241 GQAVRVSVDAYPGRTFEGKITTIEPQIATDTRNIRVQATIQNPDSILKPGMFATTTIVLP 300 GQ VR+ VDAYPGRTF+ KITTIEPQIATDTRNIRVQAT+ NPD ILKPGMF TTT+VLP Sbjct: 252 GQPVRLKVDAYPGRTFDAKITTIEPQIATDTRNIRVQATVANPDKILKPGMFVTTTVVLP 311 Query: 301 GKPPVVTIPETAVDYTLYGDSVFLITEKKGDDGKTTLTADRTFVKTGNRVEGRVEILKGL 360 KP V+T+PETAVDYTLYGDSVF+ITEKK +DGKT+L+A RTFV+TG+RVEGRVEI+KG+ Sbjct: 312 DKPAVITVPETAVDYTLYGDSVFVITEKKEEDGKTSLSAVRTFVQTGSRVEGRVEIIKGV 371 Query: 361 KAGDKVVAVGQIKLQSGMAVAISTD 385 K GDKVVAVGQ+KLQSG V+ISTD Sbjct: 372 KPGDKVVAVGQLKLQSGAPVSISTD 396 >ref|YP_531531.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] gb|ABD87212.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] Length = 397 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 288/385 (74%), Positives = 333/385 (86%) Query: 1 MNIQTESHISGQPIKEKQAKRPVRMVRWFIIVGLLLALLVGALVGFNAFRSHMIAQFFAN 60 M I +S S + ++EK RPVRM RWFIIVG+LLALLVG +VGFNAFR+HMIAQFFAN Sbjct: 1 MTIAADSPNSARALEEKPRPRPVRMTRWFIIVGVLLALLVGGIVGFNAFRNHMIAQFFAN 60 Query: 61 NKPPPANVSAVEAKTEVIPNLLTAVGDLVAVHQVNVTTDVPGRITEILFTAGSHVKAGTP 120 NKPPP +V+ EAK++VIPNLL AVGDL AVHQVNVT+DV GRIT+I+FTAG+ VKAG+P Sbjct: 61 NKPPPTSVTVAEAKSQVIPNLLIAVGDLAAVHQVNVTSDVNGRITDIMFTAGAVVKAGSP 120 Query: 121 LVQLFDAPEQGDLANYKAQATVGELQLDRAKQLASRQFGPQSTVDTAQAAYDQAKAGIAK 180 LVQLFD P++ DLA++KAQATV +L LDRAKQLA+RQFGPQ+TVD+AQAA+DQA AGIAK Sbjct: 121 LVQLFDEPDRADLASFKAQATVAQLSLDRAKQLAARQFGPQATVDSAQAAFDQANAGIAK 180 Query: 181 TEALISQKLVRAPFEGDLGVRQVEVGQYLTAGTQIVSLTDLSVLYANLTVTEKQSSQIKV 240 TEA+ISQKLVRAPF+G LGVR EVGQ+LTAGTQIV+LTDLS +YAN TVTEK S +KV Sbjct: 181 TEAIISQKLVRAPFDGVLGVRHAEVGQFLTAGTQIVTLTDLSAVYANFTVTEKDSGTLKV 240 Query: 241 GQAVRVSVDAYPGRTFEGKITTIEPQIATDTRNIRVQATIQNPDSILKPGMFATTTIVLP 300 GQ VRV+VDAYPG+ FEGKITTIEPQI TDTRNIRVQATIQNPD ILKPGMFATTT+VLP Sbjct: 241 GQVVRVAVDAYPGKVFEGKITTIEPQINTDTRNIRVQATIQNPDHILKPGMFATTTVVLP 300 Query: 301 GKPPVVTIPETAVDYTLYGDSVFLITEKKGDDGKTTLTADRTFVKTGNRVEGRVEILKGL 360 KP V+T+PETAVDYTLYGD+V+LIT KK +D +LTA RTFV+TG+R G+ I GL Sbjct: 301 DKPAVITVPETAVDYTLYGDAVYLITPKKAEDDTESLTAVRTFVRTGDRSNGQAVIQSGL 360 Query: 361 KAGDKVVAVGQIKLQSGMAVAISTD 385 K GD+VVAVGQ+KLQSG AVAISTD Sbjct: 361 KPGDRVVAVGQLKLQSGAAVAISTD 385 >ref|YP_568946.1| secretion protein HlyD [Rhodopseudomonas palustris BisB5] gb|ABE39045.1| secretion protein HlyD [Rhodopseudomonas palustris BisB5] Length = 397 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 301/397 (75%), Positives = 341/397 (85%) Query: 1 MNIQTESHISGQPIKEKQAKRPVRMVRWFIIVGLLLALLVGALVGFNAFRSHMIAQFFAN 60 M I TE+ + + EK RPVRM RW IIVGLLLALLVG LVGFNAFRSHMIAQFFAN Sbjct: 1 MTIATENPSAARSTPEKPRPRPVRMTRWIIIVGLLLALLVGGLVGFNAFRSHMIAQFFAN 60 Query: 61 NKPPPANVSAVEAKTEVIPNLLTAVGDLVAVHQVNVTTDVPGRITEILFTAGSHVKAGTP 120 NKPPP VS EA EV+PNLLTAVGDL AVHQVNVT+DV GRIT+ILFTAG+ VKAG+ Sbjct: 61 NKPPPITVSVAEANAEVVPNLLTAVGDLAAVHQVNVTSDVNGRITDILFTAGAEVKAGSK 120 Query: 121 LVQLFDAPEQGDLANYKAQATVGELQLDRAKQLASRQFGPQSTVDTAQAAYDQAKAGIAK 180 L+QL+DAPEQ DLAN++AQA V EL LDRAKQLA+RQFGPQ+TVD AQA++DQA AGIA+ Sbjct: 121 LLQLYDAPEQADLANFRAQAKVAELSLDRAKQLAARQFGPQATVDQAQASFDQASAGIAR 180 Query: 181 TEALISQKLVRAPFEGDLGVRQVEVGQYLTAGTQIVSLTDLSVLYANLTVTEKQSSQIKV 240 TEA+ISQKLVRAPF+G LGVR+VEVGQYLTAGTQIV+LTDLS +Y N TVTEK S +KV Sbjct: 181 TEAVISQKLVRAPFDGVLGVRRVEVGQYLTAGTQIVTLTDLSRVYTNFTVTEKDSGTLKV 240 Query: 241 GQAVRVSVDAYPGRTFEGKITTIEPQIATDTRNIRVQATIQNPDSILKPGMFATTTIVLP 300 GQ VRVSVDAYPG+ FEGKITTIEPQI++DTRNIRVQ T++NP+ ILKPGMFATTT+VLP Sbjct: 241 GQVVRVSVDAYPGKVFEGKITTIEPQISSDTRNIRVQGTLENPEKILKPGMFATTTVVLP 300 Query: 301 GKPPVVTIPETAVDYTLYGDSVFLITEKKGDDGKTTLTADRTFVKTGNRVEGRVEILKGL 360 KP VVT+PETAVDYTLYGDSVFLI E+K +DGK LTA RTFV+TG+RV GR IL G+ Sbjct: 301 EKPAVVTVPETAVDYTLYGDSVFLIHEEKAEDGKINLTAVRTFVRTGDRVNGRAVILSGV 360 Query: 361 KAGDKVVAVGQIKLQSGMAVAISTDPPPPVPAEPPRY 397 KAGD+VVAVGQ+KLQSG AVAIS DP P +PA+PPRY Sbjct: 361 KAGDRVVAVGQLKLQSGAAVAISKDPMPQIPAKPPRY 397 >ref|YP_780609.1| RND family efflux transporter MFP subunit [Rhodopseudomonas palustris BisA53] gb|ABJ05629.1| efflux transporter, RND family, MFP subunit [Rhodopseudomonas palustris BisA53] Length = 398 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 292/398 (73%), Positives = 337/398 (84%), Gaps = 1/398 (0%) Query: 1 MNIQTESHISGQPIKEK-QAKRPVRMVRWFIIVGLLLALLVGALVGFNAFRSHMIAQFFA 59 M + T+S + + +E+ + RPVR +RW +IVG+ L ++VG +VGFNAFRS MIA+FFA Sbjct: 1 MTLATQSAPAARKTEEQPKQPRPVRTMRWLVIVGVALTVVVGGIVGFNAFRSAMIAKFFA 60 Query: 60 NNKPPPANVSAVEAKTEVIPNLLTAVGDLVAVHQVNVTTDVPGRITEILFTAGSHVKAGT 119 NNKPPP V+ EAK+EV+PNLL AVGDL AVHQVNV+ DV GR+T+I FTAGS VKAG Sbjct: 61 NNKPPPTQVTIAEAKSEVVPNLLKAVGDLAAVHQVNVSADVSGRVTDIRFTAGSTVKAGA 120 Query: 120 PLVQLFDAPEQGDLANYKAQATVGELQLDRAKQLASRQFGPQSTVDTAQAAYDQAKAGIA 179 PLVQ+FD PE+ DLAN++AQA V EL LDRAKQLASRQFGPQ+TVDTAQAAYDQA AGIA Sbjct: 121 PLVQMFDDPEKADLANFRAQAKVAELSLDRAKQLASRQFGPQATVDTAQAAYDQANAGIA 180 Query: 180 KTEALISQKLVRAPFEGDLGVRQVEVGQYLTAGTQIVSLTDLSVLYANLTVTEKQSSQIK 239 KTEALISQKLV+APF+G LGVR EVGQYLTAGTQIV+LTDLSV+YAN TVTEK S +K Sbjct: 181 KTEALISQKLVKAPFDGVLGVRHAEVGQYLTAGTQIVTLTDLSVVYANFTVTEKDSGTLK 240 Query: 240 VGQAVRVSVDAYPGRTFEGKITTIEPQIATDTRNIRVQATIQNPDSILKPGMFATTTIVL 299 VGQ VRV+VDAYP R FEGK+TTIEPQI+TDTRNIRVQATI NPD ILKPGMFATTT+VL Sbjct: 241 VGQTVRVAVDAYPSRVFEGKLTTIEPQISTDTRNIRVQATIDNPDGILKPGMFATTTVVL 300 Query: 300 PGKPPVVTIPETAVDYTLYGDSVFLITEKKGDDGKTTLTADRTFVKTGNRVEGRVEILKG 359 P KP VVT+PETAVDYTLYGDSV+LITE K DDGKT LTA RTFV+TG+R++GR I G Sbjct: 301 PDKPAVVTVPETAVDYTLYGDSVYLITENKTDDGKTNLTAVRTFVRTGDRIDGRAVIQSG 360 Query: 360 LKAGDKVVAVGQIKLQSGMAVAISTDPPPPVPAEPPRY 397 LK GD+VVAVGQ+KLQSG AV IS +PPPP+PA+ P Y Sbjct: 361 LKPGDRVVAVGQLKLQSGSAVTISPNPPPPIPAKTPTY 398 >ref|YP_001238880.1| putative RND efflux membrane fusion protein [Bradyrhizobium sp. BTAi1] gb|ABQ34974.1| putative RND efflux membrane fusion protein precursor [Bradyrhizobium sp. BTAi1] Length = 396 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 299/385 (77%), Positives = 331/385 (85%), Gaps = 1/385 (0%) Query: 1 MNIQTESHISGQPIKEKQAKRPVRMVRWFIIVGLLLALLVGALVGFNAFRSHMIAQFFAN 60 MNI TE +SG+PI +K KR R V WF IV +LLA LVG V FN FR MIAQFFAN Sbjct: 1 MNIATEPKLSGKPIDDKPRKR-TRPVLWFTIVAILLAALVGGFVWFNMFRDKMIAQFFAN 59 Query: 61 NKPPPANVSAVEAKTEVIPNLLTAVGDLVAVHQVNVTTDVPGRITEILFTAGSHVKAGTP 120 KPPP NVS A EV+PNLLTAVGDL AVHQVNVT+D GRIT+I+FT G+ VK GTP Sbjct: 60 MKPPPINVSMATATAEVVPNLLTAVGDLAAVHQVNVTSDASGRITDIMFTPGTTVKQGTP 119 Query: 121 LVQLFDAPEQGDLANYKAQATVGELQLDRAKQLASRQFGPQSTVDTAQAAYDQAKAGIAK 180 LVQL+DAPEQGDLAN+KAQ TV +L LDRAKQLASRQFGPQ+TVD AQAAYDQA+AGIAK Sbjct: 120 LVQLYDAPEQGDLANFKAQVTVAQLSLDRAKQLASRQFGPQATVDQAQAAYDQAQAGIAK 179 Query: 181 TEALISQKLVRAPFEGDLGVRQVEVGQYLTAGTQIVSLTDLSVLYANLTVTEKQSSQIKV 240 TEALI+QKLVRAPF+GDLGVR+VEVGQYL+AGTQIVSLTDLS L+ N TVTEK S Q+KV Sbjct: 180 TEALIAQKLVRAPFDGDLGVRKVEVGQYLSAGTQIVSLTDLSELWVNFTVTEKDSGQLKV 239 Query: 241 GQAVRVSVDAYPGRTFEGKITTIEPQIATDTRNIRVQATIQNPDSILKPGMFATTTIVLP 300 GQ VRV VDAYPG+ FEGKITTIEPQIATDTRNIRVQATI NPD ILKPGMFATTT+VLP Sbjct: 240 GQTVRVGVDAYPGKVFEGKITTIEPQIATDTRNIRVQATIANPDHILKPGMFATTTVVLP 299 Query: 301 GKPPVVTIPETAVDYTLYGDSVFLITEKKGDDGKTTLTADRTFVKTGNRVEGRVEILKGL 360 KPPV+T+PETAVDYTLYGDSVF+I EKK DDGKTTLTADRT+V+TG+R+ GR ILKGL Sbjct: 300 DKPPVLTVPETAVDYTLYGDSVFVINEKKTDDGKTTLTADRTYVQTGDRINGRAVILKGL 359 Query: 361 KAGDKVVAVGQIKLQSGMAVAISTD 385 K GD+VVAVGQ+K+QSG AVAISTD Sbjct: 360 KEGDRVVAVGQLKIQSGAAVAISTD 384