BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0073.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769506.1| ABC transporter permease protein [Bradyrhizobiu... 349 2e-94 ref|YP_001204561.1| ABC transporter permease dipeptide transport... 329 2e-88 ref|YP_001238882.1| ABC transporter permease [Bradyrhizobium sp.... 326 2e-87 ref|YP_001769707.1| binding-protein-dependent transport systems ... 300 1e-79 ref|YP_001523690.1| ABC transporter permease [Azorhizobium cauli... 298 4e-79 >ref|NP_769506.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48131.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 296 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 194/261 (74%), Positives = 207/261 (79%), Gaps = 35/261 (13%) Query: 1 VLGLTVIALFILLAGFAPLIVPYDPVATSWSLVRKAPSAQHWFGTDELGRDVFARVVFGA 60 V GL VI FILLA APLIVPYDP+ATSWSLVRK P+A HWFGTDELGRD+ +RVV+GA Sbjct: 36 VFGLVVITAFILLAALAPLIVPYDPIATSWSLVRKPPTAVHWFGTDELGRDILSRVVYGA 95 Query: 61 RASLLAGVISVGIALAIGV-----------------------------------LAAFLG 85 RASLLAG+ISV IAL +GV LAAFLG Sbjct: 96 RASLLAGLISVAIALGVGVPLGLLAGYRGGFVDALISRITDAMLACPFLILAIALAAFLG 155 Query: 86 PSLSNAMIAIGVSATPIFIRLTRGQVMSVKVEDYVEAARAMGNPRWRIALVHILPNILPA 145 PSL NAMIAIG+SATPIFIRLTRGQV+SVK EDYVEAARA+GNP WRIA HILPNILPA Sbjct: 156 PSLGNAMIAIGISATPIFIRLTRGQVLSVKAEDYVEAARALGNPGWRIAFSHILPNILPA 215 Query: 146 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTSAPWMAVWPGLAIFL 205 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLT APWMA+WPGLAIFL Sbjct: 216 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTQAPWMAIWPGLAIFL 275 Query: 206 VVLSFNLVGDGLRDALDPKAR 226 VVLS NL+GDGLRDALDP+ R Sbjct: 276 VVLSLNLLGDGLRDALDPRQR 296 >ref|YP_001204561.1| ABC transporter permease dipeptide transport protein [Bradyrhizobium sp. ORS 278] emb|CAL76324.1| ABC transporter permease protein; putative dipeptide transport protein [Bradyrhizobium sp. ORS 278] Length = 276 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 181/261 (69%), Positives = 208/261 (79%), Gaps = 35/261 (13%) Query: 1 VLGLTVIALFILLAGFAPLIVPYDPVATSWSLVRKAPSAQHWFGTDELGRDVFARVVFGA 60 ++GL +I +FILLA APL+ PYDP+ TSW+LVRKAPSA HWFGTD+LGRDV ARV++GA Sbjct: 15 MVGLGLITIFILLAVSAPLVAPYDPIKTSWTLVRKAPSAVHWFGTDDLGRDVLARVIYGA 74 Query: 61 RASLLAGVISVGIALAIGV-----------------------------------LAAFLG 85 RASLLAG ISV IAL+IGV LAAFLG Sbjct: 75 RASLLAGAISVVIALSIGVPIGMLAGYRGGFIDALISRITDAMLACPFLILAIALAAFLG 134 Query: 86 PSLSNAMIAIGVSATPIFIRLTRGQVMSVKVEDYVEAARAMGNPRWRIALVHILPNILPA 145 PSL NAMIAIG+SATPIF+RLTRG+V+SVKVE+YVEAAR++G+ +IA+ HILPNI+PA Sbjct: 135 PSLGNAMIAIGISATPIFVRLTRGEVLSVKVEEYVEAARSVGDTDLQIAVRHILPNIMPA 194 Query: 146 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTSAPWMAVWPGLAIFL 205 LLVQATLS+AAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLT+APWMA+WPGLAIFL Sbjct: 195 LLVQATLSVAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTNAPWMAIWPGLAIFL 254 Query: 206 VVLSFNLVGDGLRDALDPKAR 226 VVLS NL+GDGLRDALDP+ Sbjct: 255 VVLSLNLLGDGLRDALDPQQE 275 >ref|YP_001238882.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34976.1| ABC transporter permease protein [Bradyrhizobium sp. BTAi1] Length = 276 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 181/259 (69%), Positives = 208/259 (80%), Gaps = 35/259 (13%) Query: 1 VLGLTVIALFILLAGFAPLIVPYDPVATSWSLVRKAPSAQHWFGTDELGRDVFARVVFGA 60 ++GL +IA FILLA APL+ PYDP+ TSW+LVRKAPSA HWFGTD+LGRDV ARV++GA Sbjct: 15 MVGLGLIAAFILLAVAAPLVAPYDPLKTSWTLVRKAPSAAHWFGTDDLGRDVLARVLYGA 74 Query: 61 RASLLAGVISVGIALAIGV-----------------------------------LAAFLG 85 RASLLAG ISV IAL+IGV LAAFLG Sbjct: 75 RASLLAGAISVVIALSIGVPIGMIAGYRGGFVDALISRITDAMLACPFLILAIALAAFLG 134 Query: 86 PSLSNAMIAIGVSATPIFIRLTRGQVMSVKVEDYVEAARAMGNPRWRIALVHILPNILPA 145 PSL NAMIAIG+SATPIF+RLTRG+V++VKVE+YVEAAR++G+ +IA+ HILPNI+PA Sbjct: 135 PSLGNAMIAIGISATPIFVRLTRGEVLNVKVEEYVEAARSVGDTDLQIAVRHILPNIMPA 194 Query: 146 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTSAPWMAVWPGLAIFL 205 LLVQATLS+AAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLT+APWMA+WPGLAIFL Sbjct: 195 LLVQATLSVAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTNAPWMAIWPGLAIFL 254 Query: 206 VVLSFNLVGDGLRDALDPK 224 VVLS NL+GDGLRDALDP+ Sbjct: 255 VVLSLNLLGDGLRDALDPQ 273 >ref|YP_001769707.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA17273.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 304 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 153/261 (58%), Positives = 190/261 (72%), Gaps = 35/261 (13%) Query: 1 VLGLTVIALFILLAGFAPLIVPYDPVATSWSLVRKAPSAQHWFGTDELGRDVFARVVFGA 60 V+GL V+ I +A A ++ PYDP AT W VR APS H FG DE+GRDV +R+++GA Sbjct: 43 VIGLAVVVALIAMAALADVVAPYDPTATDWGAVRAAPSLAHPFGGDEVGRDVLSRIIYGA 102 Query: 61 RASLLAGVISVGIALAIGV-----------------------------------LAAFLG 85 RASL AG++SVG+A+A+G+ LAAFLG Sbjct: 103 RASLGAGLVSVGLAVALGLPIGLVSGYAGGWVDAAIMRVTDALLAIPFLILAIALAAFLG 162 Query: 86 PSLSNAMIAIGVSATPIFIRLTRGQVMSVKVEDYVEAARAMGNPRWRIALVHILPNILPA 145 PSL+NAM+AIG+SAT F+RLTR Q +V E++VEAAR++GNP WRIALVHILPNI+PA Sbjct: 163 PSLTNAMLAIGLSATSTFVRLTRAQARAVAAEEFVEAARSVGNPAWRIALVHILPNIVPA 222 Query: 146 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTSAPWMAVWPGLAIFL 205 +LVQATL+IA AIIAEA+LSFLGLGQQPP PSWG+MLN A+ F+ APWMA+WPGL+IFL Sbjct: 223 ILVQATLTIAVAIIAEASLSFLGLGQQPPEPSWGAMLNVAKNFMDQAPWMAIWPGLSIFL 282 Query: 206 VVLSFNLVGDGLRDALDPKAR 226 VL+FNL+GDGLRDALDP+ R Sbjct: 283 AVLAFNLLGDGLRDALDPRQR 303 >ref|YP_001523690.1| ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF86772.1| ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 296 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 166/261 (63%), Positives = 194/261 (74%), Gaps = 35/261 (13%) Query: 1 VLGLTVIALFILLAGFAPLIVPYDPVATSWSLVRKAPSAQHWFGTDELGRDVFARVVFGA 60 ++GL V+ FI++A FAP I PYDP ATSW VRK P+ +H FGTDE+GRDV +RV+FGA Sbjct: 35 MIGLAVVLFFIIIAVFAPYIAPYDPTATSWLAVRKPPTWEHPFGTDEVGRDVLSRVIFGA 94 Query: 61 RASLLAGVISVGIALAIGV-----------------------------------LAAFLG 85 RASL AG++SV +A+AIG+ LAAFLG Sbjct: 95 RASLSAGLVSVALAVAIGLPVGMIAGYAGGWIEAALMRLTDALLAIPFLILAIALAAFLG 154 Query: 86 PSLSNAMIAIGVSATPIFIRLTRGQVMSVKVEDYVEAARAMGNPRWRIALVHILPNILPA 145 P+L+NAMIAIG+SAT IFIRLTR QV S KVE+YVEAARA G RI L HILPNI+PA Sbjct: 155 PTLTNAMIAIGLSATTIFIRLTRAQVQSTKVEEYVEAARAAGATPLRIVLRHILPNIIPA 214 Query: 146 LLVQATLSIAAAIIAEAALSFLGLGQQPPAPSWGSMLNAAQRFLTSAPWMAVWPGLAIFL 205 +LVQATL+IAAAIIAEA+LSFLGLGQQPP PSWGSMLN A+ FLT APWMA+WPGL+IFL Sbjct: 215 ILVQATLTIAAAIIAEASLSFLGLGQQPPDPSWGSMLNTAKNFLTQAPWMAIWPGLSIFL 274 Query: 206 VVLSFNLVGDGLRDALDPKAR 226 VLSFNL+GDGLRDALDP+ R Sbjct: 275 AVLSFNLLGDGLRDALDPRHR 295