BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0072.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769507.1| ABC transporter permease protein [Bradyrhizobiu... 573 e-161 ref|YP_001238883.1| ABC transporter permease [Bradyrhizobium sp.... 555 e-156 ref|YP_001204562.1| ABC transporter permease dipeptide transport... 548 e-154 ref|YP_001523691.1| ABC transporter permease [Azorhizobium cauli... 457 e-127 ref|ZP_02155303.1| putative substrate-binding transmembrane tran... 424 e-116 >ref|NP_769507.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48132.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 277/313 (88%), Positives = 300/313 (95%) Query: 1 MLNFLAKRLVQLVPTLFFVSLLIFSLQHLLPGDPALVMAGEERDPAVIEQIRQQYHLDQP 60 MLNFLA R+ Q+VPTLFFVS+LIFSLQ LLPGDPALVMAGEERDPA IEQIRQQY LD+P Sbjct: 1 MLNFLAHRIAQIVPTLFFVSVLIFSLQQLLPGDPALVMAGEERDPAAIEQIRQQYKLDRP 60 Query: 61 IPVQYAYWVKGVLTGDLGESLRNKMPVSSLIAQKLPVTMQIAGMAIVVAFLIGIPAGIIS 120 IPVQY YW+KGVLTG+ GESLRNKMPV LIAQKLPVT+Q+ MAI++AFLIGIPAGI+S Sbjct: 61 IPVQYVYWLKGVLTGNFGESLRNKMPVRELIAQKLPVTLQLGSMAILIAFLIGIPAGIVS 120 Query: 121 AVKIGTAWDYGANLFALWGISTPNFWLGIMLIFLFSVELGWLPASGYVPLSENWRASLAA 180 AVK GTAWDYGANLFALWGISTPNFWLGI+LIFLFS++LGWLPASGYVPL+E+WRASLAA Sbjct: 121 AVKKGTAWDYGANLFALWGISTPNFWLGILLIFLFSIKLGWLPASGYVPLTEDWRASLAA 180 Query: 181 SVMPAFVLGNAIAAILMRHTRSAMLQVLESDYVRTARAKGLSERTVILKHAMRNALTPII 240 ++MPAFVLGNAI+AILMRHTRSAMLQVLESDYVRTARAKGLSER+VILKHAMRNALTPII Sbjct: 181 TIMPAFVLGNAISAILMRHTRSAMLQVLESDYVRTARAKGLSERSVILKHAMRNALTPII 240 Query: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLTTATIYITLNLIA 300 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVL TAT+YITLNL+A Sbjct: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLVTATVYITLNLVA 300 Query: 301 DIAYILVNPRLRG 313 D+AYILVNPRLRG Sbjct: 301 DVAYILVNPRLRG 313 >ref|YP_001238883.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34977.1| ABC transporter permease protein [Bradyrhizobium sp. BTAi1] Length = 313 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 268/312 (85%), Positives = 294/312 (94%) Query: 1 MLNFLAKRLVQLVPTLFFVSLLIFSLQHLLPGDPALVMAGEERDPAVIEQIRQQYHLDQP 60 ML FLA+RL Q++PTL FVS+LIFSLQ LLPGDPALVMAGEERDPAVIEQIR+QY LDQP Sbjct: 1 MLTFLARRLAQIIPTLIFVSILIFSLQQLLPGDPALVMAGEERDPAVIEQIRKQYRLDQP 60 Query: 61 IPVQYAYWVKGVLTGDLGESLRNKMPVSSLIAQKLPVTMQIAGMAIVVAFLIGIPAGIIS 120 +PVQY YW+KGVL+GD GESLR KMPV LI QKLPVT+Q+A MAIV+AFLIGIPAGIIS Sbjct: 61 LPVQYGYWIKGVLSGDFGESLRIKMPVRDLILQKLPVTLQLASMAIVIAFLIGIPAGIIS 120 Query: 121 AVKIGTAWDYGANLFALWGISTPNFWLGIMLIFLFSVELGWLPASGYVPLSENWRASLAA 180 AVK GTAWDY ANLFALWGISTPNFWLGIMLIF+FS++LGWLPASGYVPL+E+WRASLAA Sbjct: 121 AVKRGTAWDYAANLFALWGISTPNFWLGIMLIFVFSIQLGWLPASGYVPLAEDWRASLAA 180 Query: 181 SVMPAFVLGNAIAAILMRHTRSAMLQVLESDYVRTARAKGLSERTVILKHAMRNALTPII 240 ++MPAFVLGNAIAAILMRHTRSAMLQVL SDY+RTARAKG+SER VIL+HA+RNALTP+I Sbjct: 181 TIMPAFVLGNAIAAILMRHTRSAMLQVLGSDYIRTARAKGISERQVILRHALRNALTPVI 240 Query: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLTTATIYITLNLIA 300 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVL TAT+YI LNLIA Sbjct: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLVTATVYIMLNLIA 300 Query: 301 DIAYILVNPRLR 312 D+AY+LVNPRLR Sbjct: 301 DLAYVLVNPRLR 312 >ref|YP_001204562.1| ABC transporter permease dipeptide transport protein [Bradyrhizobium sp. ORS 278] emb|CAL76325.1| ABC transporter permease protein; putative dipeptide transport protein [Bradyrhizobium sp. ORS 278] Length = 313 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/312 (84%), Positives = 290/312 (92%) Query: 1 MLNFLAKRLVQLVPTLFFVSLLIFSLQHLLPGDPALVMAGEERDPAVIEQIRQQYHLDQP 60 ML FL +R Q++PTL FVS+LIFSLQ LLPGDPALVMAGEERDPAVIEQIR+QY LDQP Sbjct: 1 MLTFLGRRFAQIIPTLVFVSILIFSLQQLLPGDPALVMAGEERDPAVIEQIRKQYRLDQP 60 Query: 61 IPVQYAYWVKGVLTGDLGESLRNKMPVSSLIAQKLPVTMQIAGMAIVVAFLIGIPAGIIS 120 +PVQY YW+KGVL+GD GESLR KMPV LI QKLPVT+Q+A MAIV+AFLIGIPAGI+S Sbjct: 61 LPVQYGYWIKGVLSGDFGESLRIKMPVRDLILQKLPVTLQLASMAIVIAFLIGIPAGIVS 120 Query: 121 AVKIGTAWDYGANLFALWGISTPNFWLGIMLIFLFSVELGWLPASGYVPLSENWRASLAA 180 AVK GT WDY ANLFALWGISTPNFWLGIMLIF+FS++LGWLPASGYV L+E+WRASLAA Sbjct: 121 AVKRGTGWDYAANLFALWGISTPNFWLGIMLIFVFSIQLGWLPASGYVSLAEDWRASLAA 180 Query: 181 SVMPAFVLGNAIAAILMRHTRSAMLQVLESDYVRTARAKGLSERTVILKHAMRNALTPII 240 +VMPAFVLGNAIAAILMRHTRSAMLQVL SDY+RTARAKG+SER VIL+HA+RNALTP+I Sbjct: 181 TVMPAFVLGNAIAAILMRHTRSAMLQVLSSDYIRTARAKGISERQVILRHALRNALTPVI 240 Query: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLTTATIYITLNLIA 300 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVL TAT+YI LNLIA Sbjct: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLVTATVYILLNLIA 300 Query: 301 DIAYILVNPRLR 312 D+AY+LVNPRLR Sbjct: 301 DLAYVLVNPRLR 312 >ref|YP_001523691.1| ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF86773.1| ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 314 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/312 (68%), Positives = 264/312 (84%) Query: 1 MLNFLAKRLVQLVPTLFFVSLLIFSLQHLLPGDPALVMAGEERDPAVIEQIRQQYHLDQP 60 ML F KRL ++PT+ S++IF+LQ LLPGDPA+ ++GEE+DPA IE IR++YHL++P Sbjct: 1 MLRFFLKRLATIIPTVILASMIIFALQQLLPGDPAIALSGEEKDPAAIEFIREKYHLNEP 60 Query: 61 IPVQYAYWVKGVLTGDLGESLRNKMPVSSLIAQKLPVTMQIAGMAIVVAFLIGIPAGIIS 120 +PV+Y YW+ GVL GDLGES+R + PV+SLI K PVT+Q+A MA+ +A LIG+P GI+S Sbjct: 61 LPVRYGYWISGVLRGDLGESIRLQQPVASLIVSKFPVTLQLAVMAMAIALLIGVPMGILS 120 Query: 121 AVKIGTAWDYGANLFALWGISTPNFWLGIMLIFLFSVELGWLPASGYVPLSENWRASLAA 180 AV G A DY AN+ ALWG+STPNFWLGIMLI LFSV+LGWLPASGYVP +EN +L A Sbjct: 121 AVHNGKAMDYIANVIALWGLSTPNFWLGIMLILLFSVQLGWLPASGYVPPTENLLENLRA 180 Query: 181 SVMPAFVLGNAIAAILMRHTRSAMLQVLESDYVRTARAKGLSERTVILKHAMRNALTPII 240 ++PAFVLGN+IAA++MRHTR+AMLQVL SDYVRTARAKGL+ R+VI++H +RNA P+I Sbjct: 181 MILPAFVLGNSIAAVMMRHTRAAMLQVLSSDYVRTARAKGLAPRSVIIRHCLRNAAVPVI 240 Query: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLTTATIYITLNLIA 300 TLGALE G LLSGA+LTEQ+FS+PGFGKL+VDAVFNRDYAVVQGVVL TAT YI LNL+A Sbjct: 241 TLGALEFGALLSGALLTEQVFSVPGFGKLMVDAVFNRDYAVVQGVVLCTATTYILLNLLA 300 Query: 301 DIAYILVNPRLR 312 D+AY LVNP+LR Sbjct: 301 DLAYFLVNPKLR 312 >ref|ZP_02155303.1| putative substrate-binding transmembrane transmembrane component of ABC transporter [Oceanibulbus indolifex HEL-45] gb|EDQ03186.1| putative substrate-binding transmembrane transmembrane component of ABC transporter [Oceanibulbus indolifex HEL-45] Length = 314 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/312 (67%), Positives = 250/312 (80%) Query: 1 MLNFLAKRLVQLVPTLFFVSLLIFSLQHLLPGDPALVMAGEERDPAVIEQIRQQYHLDQP 60 ML+F+ +RLV +PT+ +S+ +F+LQ LLPGDP L MAGEERDP V+E +R++Y L+ P Sbjct: 1 MLSFILRRLVIAIPTIILISVFVFTLQKLLPGDPVLAMAGEERDPQVLEFLREKYRLNDP 60 Query: 61 IPVQYAYWVKGVLTGDLGESLRNKMPVSSLIAQKLPVTMQIAGMAIVVAFLIGIPAGIIS 120 IPVQY W+ LTGDLG SLR PV LI QKLPVT+Q+A MA++ A +IGIPAGI S Sbjct: 61 IPVQYFTWIGNALTGDLGISLRTNQPVLELIGQKLPVTIQLATMAMIFAMVIGIPAGIFS 120 Query: 121 AVKIGTAWDYGANLFALWGISTPNFWLGIMLIFLFSVELGWLPASGYVPLSENWRASLAA 180 AVK GT DY AN+ AL G+S PNFWLGIMLI L SV+ LPASGYVPLSE+ S+ Sbjct: 121 AVKKGTVTDYIANVVALSGLSIPNFWLGIMLILLVSVKWKLLPASGYVPLSEDPIRSITV 180 Query: 181 SVMPAFVLGNAIAAILMRHTRSAMLQVLESDYVRTARAKGLSERTVILKHAMRNALTPII 240 +MPAFVLG A+AA LMRHTRSAML V+ SDYVRTARAKGL ER VILKHA RNALTPI+ Sbjct: 181 MLMPAFVLGTALAATLMRHTRSAMLSVMSSDYVRTARAKGLVERKVILKHAFRNALTPIV 240 Query: 241 TLGALELGTLLSGAVLTEQIFSIPGFGKLIVDAVFNRDYAVVQGVVLTTATIYITLNLIA 300 TL AL G L++GAVLTEQIF+IPGFGKL+VDAVFNRDYAVVQG+VL TA +I +NL+A Sbjct: 241 TLTALLFGELIAGAVLTEQIFTIPGFGKLVVDAVFNRDYAVVQGIVLVTAVGFIFMNLLA 300 Query: 301 DIAYILVNPRLR 312 D+AY+L+NPRLR Sbjct: 301 DVAYVLLNPRLR 312