BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0062.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769515.1| ABC transporter permease protein [Bradyrhizobiu... 557 e-157 ref|YP_001238889.1| putative oligopeptide ABC transporter permea... 530 e-148 ref|YP_001204568.1| putative oligopeptide ABC transporter permea... 526 e-147 ref|YP_568950.1| binding-protein-dependent transport systems inn... 481 e-134 ref|YP_001757125.1| binding-protein-dependent transport systems ... 416 e-114 >ref|NP_769515.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48140.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 283/323 (87%), Positives = 299/323 (92%), Gaps = 4/323 (1%) Query: 1 MSDAVVSHRSEDHQAPA----GWFRRALDSDVFYSFRRSRLTMVAAVITLLFFLLAIFAS 56 MSDAVVS+ + P GWF RALDSDVFYSFRRS+LTMVAA IT+LFFLLAIFAS Sbjct: 1 MSDAVVSNSDKQSTQPTHAARGWFSRALDSDVFYSFRRSKLTMVAAAITVLFFLLAIFAS 60 Query: 57 WLAVQNPFDPAQLQLINSRIAPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLAVGLA 116 WLAVQNPFDPAQLQL+NSRI+PLWTADGQSPFLLGTDEQGRDV SAILYG+RISLAVG+A Sbjct: 61 WLAVQNPFDPAQLQLMNSRISPLWTADGQSPFLLGTDEQGRDVFSAILYGMRISLAVGVA 120 Query: 117 GVVFAGALGIALGLIAGYFGGVVDTVIMRIADVQLTFPAILIALLVNGVAKSLLGNRLDE 176 GV+FAGALGIALGL+AGYFGG VD VIMRIADVQLTFPAILIALLVNG+AKS+LGNRLD Sbjct: 121 GVIFAGALGIALGLMAGYFGGAVDGVIMRIADVQLTFPAILIALLVNGIAKSILGNRLDA 180 Query: 177 ISTLGVLIIAIGLSFWVQYARTVRGSVMVEKNKDYVAAAQLIGLPAPKIMLRHVLPNTMG 236 S L VL+I+IGLSFWV YARTVRGSVMVEKNKDYVAAAQLIGLPAP IMLRHVLPNTMG Sbjct: 181 TSMLVVLVISIGLSFWVGYARTVRGSVMVEKNKDYVAAAQLIGLPAPVIMLRHVLPNTMG 240 Query: 237 PILVIATINLALAIITEATLSFLGAGMPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGIAL 296 PILVIATINLALAIITEATLSFLG G+PDTMPSLGTLIRIGNNYLFAGEWWIVAFPG+AL Sbjct: 241 PILVIATINLALAIITEATLSFLGVGLPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGLAL 300 Query: 297 AGLILSINLLGDWLRDALNPKLR 319 A LILSINLLGDWLRDALNPKLR Sbjct: 301 AALILSINLLGDWLRDALNPKLR 323 >ref|YP_001238889.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34983.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 322 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 269/322 (83%), Positives = 293/322 (90%), Gaps = 3/322 (0%) Query: 1 MSDAVVSHRSE---DHQAPAGWFRRALDSDVFYSFRRSRLTMVAAVITLLFFLLAIFASW 57 MSDA + H + H GW +RAL SD+FYSFRRS+LT+VAAVITL+FFLLA+FA Sbjct: 1 MSDAALPHPTPVQAPHTVKNGWLKRALASDLFYSFRRSKLTVVAAVITLIFFLLAVFAPV 60 Query: 58 LAVQNPFDPAQLQLINSRIAPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLAVGLAG 117 L+ QNPFDPAQLQL+NSRI+PLWTADGQSPFLLGTDEQGRDVLSAILYGLRISL VG+ G Sbjct: 61 LSPQNPFDPAQLQLLNSRISPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLIVGILG 120 Query: 118 VVFAGALGIALGLIAGYFGGVVDTVIMRIADVQLTFPAILIALLVNGVAKSLLGNRLDEI 177 VVF+GALGIALGLIAGYFGG VDTVIMRIADVQLTFP ILIALLVNG+AKS+ GN L+ + Sbjct: 121 VVFSGALGIALGLIAGYFGGRVDTVIMRIADVQLTFPPILIALLVNGIAKSVSGNHLEWL 180 Query: 178 STLGVLIIAIGLSFWVQYARTVRGSVMVEKNKDYVAAAQLIGLPAPKIMLRHVLPNTMGP 237 S L VL++AIGLSFWVQYARTVR SVMVEKNKDYVAAAQLIGLPAP IMLRHVLPNT GP Sbjct: 181 SMLAVLVLAIGLSFWVQYARTVRSSVMVEKNKDYVAAAQLIGLPAPVIMLRHVLPNTTGP 240 Query: 238 ILVIATINLALAIITEATLSFLGAGMPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGIALA 297 +LVIATINLALAIITEATLSFLG+GMP+TMPSLGTLIRIGNNYLFAGEWWIVAFPG+ALA Sbjct: 241 VLVIATINLALAIITEATLSFLGSGMPETMPSLGTLIRIGNNYLFAGEWWIVAFPGLALA 300 Query: 298 GLILSINLLGDWLRDALNPKLR 319 GLIL+INLLGDWLRDALNPKLR Sbjct: 301 GLILAINLLGDWLRDALNPKLR 322 >ref|YP_001204568.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL76331.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 322 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 270/323 (83%), Positives = 294/323 (91%), Gaps = 5/323 (1%) Query: 1 MSDAVVSHRSEDHQAPA----GWFRRALDSDVFYSFRRSRLTMVAAVITLLFFLLAIFAS 56 MSDA + H + QAP GW +RAL SD+FYSFRRS+LT+ AA+ITLLFFLLAIFA Sbjct: 1 MSDAALPHPTP-VQAPRATSDGWLKRALASDLFYSFRRSKLTVAAAIITLLFFLLAIFAP 59 Query: 57 WLAVQNPFDPAQLQLINSRIAPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLAVGLA 116 L+ QNPFDPAQLQL+NSRI+PLWTADGQSPFLLGTDEQGRDVLSAILYGLRISL VG+ Sbjct: 60 LLSPQNPFDPAQLQLLNSRISPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLLVGIL 119 Query: 117 GVVFAGALGIALGLIAGYFGGVVDTVIMRIADVQLTFPAILIALLVNGVAKSLLGNRLDE 176 GVVF+GALGI LGL+AGYFGG VDTVIMRIADVQLTFP ILIALLVNG+AKS+ GN LD Sbjct: 120 GVVFSGALGIGLGLVAGYFGGRVDTVIMRIADVQLTFPPILIALLVNGIAKSVSGNHLDW 179 Query: 177 ISTLGVLIIAIGLSFWVQYARTVRGSVMVEKNKDYVAAAQLIGLPAPKIMLRHVLPNTMG 236 +S LGVL++AIGLSFWVQYARTVR SV+VEKNKDYVAAAQLIGLPAP IMLRHVLPNT G Sbjct: 180 LSMLGVLVLAIGLSFWVQYARTVRSSVLVEKNKDYVAAAQLIGLPAPVIMLRHVLPNTTG 239 Query: 237 PILVIATINLALAIITEATLSFLGAGMPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGIAL 296 P+LVIATINLALAIITEATLSFLG+GMP+TMPSLGTLIRIGNNYLFAGEWWIVAFPG+AL Sbjct: 240 PVLVIATINLALAIITEATLSFLGSGMPETMPSLGTLIRIGNNYLFAGEWWIVAFPGLAL 299 Query: 297 AGLILSINLLGDWLRDALNPKLR 319 AGLIL+INLLGDWLRDALNPKLR Sbjct: 300 AGLILAINLLGDWLRDALNPKLR 322 >ref|YP_568950.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE39049.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 319 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 249/316 (78%), Positives = 278/316 (87%), Gaps = 1/316 (0%) Query: 5 VVSHRSEDHQAPAG-WFRRALDSDVFYSFRRSRLTMVAAVITLLFFLLAIFASWLAVQNP 63 +++ D P G W R DSDVFY+FRRS L + AA++TLLFF +AIFA LAVQNP Sbjct: 4 MLAPEGHDPATPRGHWLARVADSDVFYAFRRSPLAIGAAIVTLLFFAVAIFAPLLAVQNP 63 Query: 64 FDPAQLQLINSRIAPLWTADGQSPFLLGTDEQGRDVLSAILYGLRISLAVGLAGVVFAGA 123 FDPAQL+L+NSRIAPLWTADGQ+PFLLGTDEQGRDVLSAILYGLRISL VG+ GV A A Sbjct: 64 FDPAQLELMNSRIAPLWTADGQAPFLLGTDEQGRDVLSAILYGLRISLLVGVLGVGLAAA 123 Query: 124 LGIALGLIAGYFGGVVDTVIMRIADVQLTFPAILIALLVNGVAKSLLGNRLDEISTLGVL 183 +GI LGLIAGYFGG DTVIMRIADVQLTFPAILIALL++GV KS LGN+LDE + L VL Sbjct: 124 IGIVLGLIAGYFGGFADTVIMRIADVQLTFPAILIALLIDGVVKSALGNKLDERTMLAVL 183 Query: 184 IIAIGLSFWVQYARTVRGSVMVEKNKDYVAAAQLIGLPAPKIMLRHVLPNTMGPILVIAT 243 +++IGLSFWVQYARTVR SVMVE+ KDYVAAAQLIGLPA IM RHVLPNTMGP+LVIAT Sbjct: 184 VVSIGLSFWVQYARTVRSSVMVERTKDYVAAAQLIGLPAATIMRRHVLPNTMGPVLVIAT 243 Query: 244 INLALAIITEATLSFLGAGMPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGIALAGLILSI 303 INLALA++TEATLSFLG+GMP+TMPSLGTLIRIGNNYLF+GEWW++AFPGIALA LILSI Sbjct: 244 INLALAVLTEATLSFLGSGMPETMPSLGTLIRIGNNYLFSGEWWVIAFPGIALATLILSI 303 Query: 304 NLLGDWLRDALNPKLR 319 NLLGDWLRDALNPKLR Sbjct: 304 NLLGDWLRDALNPKLR 319 >ref|YP_001757125.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] gb|ACB26442.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] Length = 323 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/298 (69%), Positives = 251/298 (84%) Query: 22 RALDSDVFYSFRRSRLTMVAAVITLLFFLLAIFASWLAVQNPFDPAQLQLINSRIAPLWT 81 R +SD+ +F RS+ + A V T+L LA + W+A QNP+DPAQL LINS + P+W Sbjct: 26 RWRESDLLANFLRSKTAVAALVATVLMVGLAFASPWIAPQNPYDPAQLDLINSNLPPIWQ 85 Query: 82 ADGQSPFLLGTDEQGRDVLSAILYGLRISLAVGLAGVVFAGALGIALGLIAGYFGGVVDT 141 ADGQ+P+ LGTD+QGRDVLSA+LYGLR+SL VG+ GVV +G LGIALGLIAGY GG +DT Sbjct: 86 ADGQAPYYLGTDDQGRDVLSAVLYGLRLSLIVGVLGVVTSGILGIALGLIAGYAGGFLDT 145 Query: 142 VIMRIADVQLTFPAILIALLVNGVAKSLLGNRLDEISTLGVLIIAIGLSFWVQYARTVRG 201 +IMR+ADVQLTFPAILIAL+V+GVAK+ G+ LD +G+++++IGLSFWVQYARTVR Sbjct: 146 LIMRVADVQLTFPAILIALVVDGVAKASFGSALDVGPLIGLIVVSIGLSFWVQYARTVRS 205 Query: 202 SVMVEKNKDYVAAAQLIGLPAPKIMLRHVLPNTMGPILVIATINLALAIITEATLSFLGA 261 SVMVEK KDYV AA+LIGL P IM+RHVLPN GP+ VIATINLALAIITEATLSFLG Sbjct: 206 SVMVEKGKDYVQAARLIGLSPPVIMVRHVLPNVTGPVFVIATINLALAIITEATLSFLGT 265 Query: 262 GMPDTMPSLGTLIRIGNNYLFAGEWWIVAFPGIALAGLILSINLLGDWLRDALNPKLR 319 G+P+TMPSLGTLIR GN +LF+GEWWIVAFPG+ALAGL+++INLLGDWLRDALNPKL+ Sbjct: 266 GLPETMPSLGTLIRTGNRFLFSGEWWIVAFPGLALAGLVIAINLLGDWLRDALNPKLQ 323