BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0061.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769516.1| ABC transporter permease protein [Bradyrhizobiu... 589 e-166 ref|YP_001204569.1| putative oligopeptide ABC transporter permea... 565 e-159 ref|YP_001238890.1| putative oligopeptide ABC transporter permea... 562 e-158 ref|YP_568951.1| binding-protein-dependent transport systems inn... 553 e-155 ref|YP_001757124.1| binding-protein-dependent transport systems ... 524 e-147 >ref|NP_769516.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48141.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 296/324 (91%), Positives = 310/324 (95%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 MLAFTLRR +QAIGVM AVG+IAF+MFRFAGDPVNQIVSIDTSAA+R +R SLGLDDPV Sbjct: 4 MLAFTLRRAVQAIGVMFAVGIIAFSMFRFAGDPVNQIVSIDTSAAEREAVRKSLGLDDPV 63 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 VQF YF +A QFKFGVSYQFR PVS+LL ER+PATLEL+ICAT+FAMV GILMGVYSA Sbjct: 64 PVQFVRYFGDAAQFKFGVSYQFRQPVSALLMERMPATLELAICATVFAMVFGILMGVYSA 123 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 L+RDT LAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL Sbjct: 124 LKRDTALAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 183 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T+SGLKALIMP+ITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK Sbjct: 184 TLSGLKALIMPSITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 243 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NTL+PVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF Sbjct: 244 NTLIPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 303 Query: 301 VTINLVVDILYTVVDPRLRSTVGR 324 VTINLVVDILYTVVDPRLRSTVGR Sbjct: 304 VTINLVVDILYTVVDPRLRSTVGR 327 >ref|YP_001204569.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL76332.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 326 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 279/326 (85%), Positives = 306/326 (93%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 MLAFTLRR +QAIGVM+AVG+IAFAMFRFAGDPV+Q+V ID SAA+RA+IR SLGLDDP Sbjct: 1 MLAFTLRRAIQAIGVMIAVGIIAFAMFRFAGDPVSQLVPIDASAAERAQIRQSLGLDDPF 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 +VQFG Y +A QFKFGVSYQFR PVS LL ER+PATLEL++CAT+ A+V GI+MGV+SA Sbjct: 61 IVQFGRYLFDAAQFKFGVSYQFRQPVSDLLKERMPATLELAVCATILALVFGIIMGVFSA 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 LRRD++LAKLFQ VSLIGISLPTFLIGILLIYLF+VTLGWLPSFGRG+VVKLGWW+TGLL Sbjct: 121 LRRDSLLAKLFQMVSLIGISLPTFLIGILLIYLFSVTLGWLPSFGRGDVVKLGWWSTGLL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T+SG KALIMP+ITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHAL+ Sbjct: 181 TLSGWKALIMPSITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALR 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NTLVPVITV GLQFGSVIAFSIITE VFQWPGMGLLFVQAVQNVDIPIMAAYL+MVSLIF Sbjct: 241 NTLVPVITVVGLQFGSVIAFSIITEQVFQWPGMGLLFVQAVQNVDIPIMAAYLMMVSLIF 300 Query: 301 VTINLVVDILYTVVDPRLRSTVGRTA 326 VTINLVVDILYTVVDPRLR+T+ R A Sbjct: 301 VTINLVVDILYTVVDPRLRATISRPA 326 >ref|YP_001238890.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34984.1| putative oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 326 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/326 (85%), Positives = 303/326 (92%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 MLAFTLRR +QAIGVM+AVG+IAFAMFRFAGDPV+QIV ID SAA+RA +R SLGLDDP Sbjct: 1 MLAFTLRRAIQAIGVMIAVGIIAFAMFRFAGDPVSQIVPIDASAAERARVRESLGLDDPF 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 +VQFG Y +A QFKFGVSYQFR PVS LL ER+PATLEL+ICAT+ A+ GI+MGV+SA Sbjct: 61 IVQFGRYLFDAAQFKFGVSYQFRQPVSDLLKERMPATLELAICATILALFFGIIMGVFSA 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 LRRD+++AKLFQ VSLIGISLPTFLIGILLIYLF+VTLGWLPSFGRG+VVK+GWWTTGLL Sbjct: 121 LRRDSLMAKLFQMVSLIGISLPTFLIGILLIYLFSVTLGWLPSFGRGDVVKIGWWTTGLL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T SG KALIMP+ITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHAL+ Sbjct: 181 TASGWKALIMPSITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALR 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NTLVPVITV GLQFGSVIAFSIITE VFQWPGMGLLFVQAVQNVDIPIMAAYL+MVSLIF Sbjct: 241 NTLVPVITVVGLQFGSVIAFSIITEQVFQWPGMGLLFVQAVQNVDIPIMAAYLMMVSLIF 300 Query: 301 VTINLVVDILYTVVDPRLRSTVGRTA 326 VTINLVVDILYTVVDPRLR+T+ R A Sbjct: 301 VTINLVVDILYTVVDPRLRATISRPA 326 >ref|YP_568951.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE39050.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 326 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 273/324 (84%), Positives = 299/324 (92%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 MLAFTLRR LQAIGVM+ V ++FAMFRFAGDPV+QIVSIDTS A+RAEIR SLGLDDPV Sbjct: 1 MLAFTLRRMLQAIGVMIVVCALSFAMFRFAGDPVSQIVSIDTSTAERAEIRKSLGLDDPV 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 L+QFG YF+NA QF FG+SY+FR PV+ LL ER+PATLEL+ CAT+ AM GIL+GVY+A Sbjct: 61 LLQFGRYFVNAAQFDFGMSYRFREPVAKLLLERMPATLELATCATVLAMTLGILLGVYTA 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 LRR++ LA L QAVSLIGISLPTFLIGILLIYLFAV LGWLPS+GRGE V+ GWWTTGLL Sbjct: 121 LRRNSWLATLMQAVSLIGISLPTFLIGILLIYLFAVVLGWLPSYGRGETVRFGWWTTGLL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T SGLK+LIMP+ITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK Sbjct: 181 TTSGLKSLIMPSITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NTLVPVITVAGLQFGSVIAF+IITETVFQWPGMGLLFVQAVQNVDIPIMAAYLL+VSLIF Sbjct: 241 NTLVPVITVAGLQFGSVIAFAIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLVVSLIF 300 Query: 301 VTINLVVDILYTVVDPRLRSTVGR 324 VTINLVVDILYT+VDPRLR++ R Sbjct: 301 VTINLVVDILYTLVDPRLRASAAR 324 >ref|YP_001757124.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] gb|ACB26441.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] Length = 326 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/326 (80%), Positives = 291/326 (89%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 MLAF LRR +QA V+ VG+IAFAMFRFAGDPVNQIV DT+ A+RA+IR LGLDDPV Sbjct: 1 MLAFLLRRVIQAAAVLAVVGLIAFAMFRFAGDPVNQIVGPDTTVAERAQIRTDLGLDDPV 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 LVQF Y N ++ +FG+SYQFR PVS LLAER+PATLEL+ CAT+FA+V GILMGVY A Sbjct: 61 LVQFVRYAGNVVRGQFGISYQFRQPVSQLLAERMPATLELAFCATIFALVVGILMGVYCA 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 L R++ LA LFQAVSLIGISLPTFLIGILLIYLF+VTLGWLPS+GRG+ V+LGWWTTG L Sbjct: 121 LFRESWLAGLFQAVSLIGISLPTFLIGILLIYLFSVTLGWLPSYGRGDTVRLGWWTTGFL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T SGLKALI+P++TLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRA+H HALK Sbjct: 181 TASGLKALILPSVTLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAVHLRHALK 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NTLVPVIT+AGLQ GSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIM+AYLL+V+LIF Sbjct: 241 NTLVPVITIAGLQLGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMSAYLLLVALIF 300 Query: 301 VTINLVVDILYTVVDPRLRSTVGRTA 326 VTINLVVDILYTVVDPRLR GR A Sbjct: 301 VTINLVVDILYTVVDPRLRLPAGRAA 326