BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0060.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001238891.1| putative oligopeptide ABC transporter substr... 910 0.0 ref|YP_001204570.1| putative oligopeptide ABC transporter substr... 901 0.0 ref|YP_568952.1| extracellular solute-binding protein [Rhodopseu... 866 0.0 ref|NP_769517.1| ABC transporter substrate-binding protein [Brad... 853 0.0 ref|YP_001757123.1| extracellular solute-binding protein [Methyl... 689 0.0 >ref|YP_001238891.1| putative oligopeptide ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ34985.1| putative oligopeptide ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 532 Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/530 (81%), Positives = 474/530 (89%), Gaps = 2/530 (0%) Query: 1 MSVRWSF--AAAAVAFVAFAWPASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGL 58 MS R S AAAA+ PASAQTL+YANQG LKSLDPYT KE+TTIAHHAHVYEGL Sbjct: 1 MSGRKSLLIAAAAILVGLAGLPASAQTLRYANQGTLKSLDPYTFKESTTIAHHAHVYEGL 60 Query: 59 TARDKDLKIIPALAESWETLSPTKWRFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNF 118 TARDKDLKIIPALAESWET PT+WRFHLRKGVKFHNG+PFTADDV+FSA+RVRA GSNF Sbjct: 61 TARDKDLKIIPALAESWETPEPTRWRFHLRKGVKFHNGEPFTADDVIFSADRVRATGSNF 120 Query: 119 LSNVPADAKFSKVDDYTVDVTLDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTP 178 LSNVP DAKF K+DDYTVDV LD+PNPILISQWD+WYIM KKWCEENNSVAPTP SATTP Sbjct: 121 LSNVPPDAKFVKIDDYTVDVKLDAPNPILISQWDTWYIMSKKWCEENNSVAPTPVSATTP 180 Query: 179 SYAALHENGTGPFTIESHQPGVKTVFKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLS 238 SYAALHENGTGPF IESHQPGVKTVFK +WRKPEHN+KEI+FT I SDATRVAALLS Sbjct: 181 SYAALHENGTGPFIIESHQPGVKTVFKVNPNWWRKPEHNIKEIVFTTISSDATRVAALLS 240 Query: 239 GEVDVIEPVPLQDIQRVNSSGVATVMTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIR 298 GEVD+IEPVP+QDI RV+SS A V+ PE+RTIF+GMD +RDELLYSN+KGKNPFKDIR Sbjct: 241 GEVDIIEPVPVQDIGRVDSSPNAQVLKGPELRTIFLGMDESRDELLYSNVKGKNPFKDIR 300 Query: 299 VREAFYKTIDVDLIKTRVMRGMSTPSTLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGY 358 VREAFYK IDV+LIKTRVMRG+STPS LMIAPEL+PLSKEFTRPK DPDGAKKLL +AGY Sbjct: 301 VREAFYKAIDVELIKTRVMRGLSTPSALMIAPELFPLSKEFTRPKYDPDGAKKLLTEAGY 360 Query: 359 PNGFEVTMDCPNDRYVNDAAICQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSF 418 P+GFEV +DCPNDRYVNDAAICQAVVGMLARIGVKVNL AQPKAQYFAKVLKPGGY TSF Sbjct: 361 PDGFEVALDCPNDRYVNDAAICQAVVGMLARIGVKVNLNAQPKAQYFAKVLKPGGYNTSF 420 Query: 419 FMLGWTPATSDSHNVLHDILGCRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKR 478 F+LGWTP++ D+HNV+HDI+GCR+DPKD TRGEANLG YCNK+ DALTDKVL+E D AKR Sbjct: 421 FLLGWTPSSMDAHNVMHDIMGCREDPKDPTRGEANLGNYCNKEFDALTDKVLVETDAAKR 480 Query: 479 DQLIKQAYDIVIKDYGYIPLHQQPLVWGVSKKVKLTQRADNQVLLYWATK 528 +QLIKQA++I IKDYGYIP+HQQ + WGVSKKVK+ RADN VL+Y ATK Sbjct: 481 NQLIKQAFEIGIKDYGYIPVHQQAVAWGVSKKVKIALRADNLVLMYLATK 530 >ref|YP_001204570.1| putative oligopeptide ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL76333.1| putative oligopeptide ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 531 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/529 (81%), Positives = 471/529 (89%), Gaps = 1/529 (0%) Query: 1 MSVRWSF-AAAAVAFVAFAWPASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLT 59 MS R S AAAVAF PASAQTL+YANQG LKSLDPYT KE+TTIAHHAHVYEGLT Sbjct: 1 MSGRKSLLIAAAVAFGLSLMPASAQTLRYANQGTLKSLDPYTFKESTTIAHHAHVYEGLT 60 Query: 60 ARDKDLKIIPALAESWETLSPTKWRFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNFL 119 ARDKDLKIIPALAESWET PT+WRFHLRKGVKFHNG+PFTADDV+FSA+RVRA GSNFL Sbjct: 61 ARDKDLKIIPALAESWETPEPTRWRFHLRKGVKFHNGEPFTADDVIFSADRVRATGSNFL 120 Query: 120 SNVPADAKFSKVDDYTVDVTLDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTPS 179 SNVP DAKF KVDDYTVDV LD+PNPILISQWD+W+IM KKWCE+NN+VAPTP SATTPS Sbjct: 121 SNVPPDAKFIKVDDYTVDVKLDAPNPILISQWDTWFIMSKKWCEDNNAVAPTPVSATTPS 180 Query: 180 YAALHENGTGPFTIESHQPGVKTVFKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLSG 239 YA+LHENGTGPF IESHQPGVKTVFK +W KPEHNLKEI+FT I SDATRVAALLSG Sbjct: 181 YASLHENGTGPFIIESHQPGVKTVFKVNPNWWGKPEHNLKEIVFTTISSDATRVAALLSG 240 Query: 240 EVDVIEPVPLQDIQRVNSSGVATVMTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIRV 299 EVD+IEPVP+QDI RV+SS A V+ PE+RTIF+GMD RDELLYSN+KGKNPFKDIRV Sbjct: 241 EVDIIEPVPVQDIGRVDSSPNAQVLKGPELRTIFLGMDETRDELLYSNVKGKNPFKDIRV 300 Query: 300 REAFYKTIDVDLIKTRVMRGMSTPSTLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGYP 359 REAFYK+IDV+LIKTRVMRG+STPS LMIAP+LY LSK+FTRPK DPD AKKLL +AGYP Sbjct: 301 REAFYKSIDVELIKTRVMRGLSTPSALMIAPQLYSLSKDFTRPKYDPDAAKKLLTEAGYP 360 Query: 360 NGFEVTMDCPNDRYVNDAAICQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFF 419 +GFEV MDCPNDRYVNDAAICQAVVGMLARIGVKVNL AQPKAQYFAKVLKPGGY TSFF Sbjct: 361 DGFEVGMDCPNDRYVNDAAICQAVVGMLARIGVKVNLNAQPKAQYFAKVLKPGGYNTSFF 420 Query: 420 MLGWTPATSDSHNVLHDILGCRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRD 479 +LGWTP++ D+HNV+HDI+GCRDD KD TRGEANLG YCNK+ DALTDKVL+E D AKRD Sbjct: 421 LLGWTPSSMDAHNVMHDIMGCRDDAKDPTRGEANLGNYCNKEFDALTDKVLVEADPAKRD 480 Query: 480 QLIKQAYDIVIKDYGYIPLHQQPLVWGVSKKVKLTQRADNQVLLYWATK 528 QLIKQA++I IKDYGYIPLHQQ + WGVSKKVK+ RADN VL++WA K Sbjct: 481 QLIKQAFEIGIKDYGYIPLHQQAVAWGVSKKVKIPLRADNAVLMFWANK 529 >ref|YP_568952.1| extracellular solute-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE39051.1| extracellular solute-binding protein, family 5 [Rhodopseudomonas palustris BisB5] Length = 532 Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/510 (82%), Positives = 467/510 (91%) Query: 20 PASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLS 79 PASAQTL+YANQG+L SLDPYTLKETTTIAHHAH+YEGL RDKDLKI+PALAESWETL Sbjct: 22 PASAQTLRYANQGDLNSLDPYTLKETTTIAHHAHIYEGLITRDKDLKIVPALAESWETLD 81 Query: 80 PTKWRFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNFLSNVPADAKFSKVDDYTVDVT 139 P WRFHLRKGVKFHNG+PFTADDV+FSAERVRAKGSN+LSNVP+DAKF K+DD+TVDV Sbjct: 82 PKHWRFHLRKGVKFHNGNPFTADDVIFSAERVRAKGSNYLSNVPSDAKFVKIDDHTVDVL 141 Query: 140 LDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTGPFTIESHQPG 199 LD+PNPIL+SQWD+W+IMDK+WC ENNSVAPTPA+ATTPSYA+LHENGTGPF I+ HQPG Sbjct: 142 LDTPNPILVSQWDNWFIMDKEWCTENNSVAPTPAAATTPSYASLHENGTGPFVIDLHQPG 201 Query: 200 VKTVFKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRVNSSG 259 VKTVFKA +W KPEHNLKEI+FTPIGS ATRVAALLSGEVD+IEPVP+QDI+RVN SG Sbjct: 202 VKTVFKANPNWWGKPEHNLKEIVFTPIGSAATRVAALLSGEVDLIEPVPIQDIERVNGSG 261 Query: 260 VATVMTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIRVREAFYKTIDVDLIKTRVMRG 319 ATV+T PE+RTIF+GMD RDELLYSN+KGKNPFKDIRVREAFYK IDVDLIKTRVMRG Sbjct: 262 TATVLTGPELRTIFLGMDQNRDELLYSNVKGKNPFKDIRVREAFYKAIDVDLIKTRVMRG 321 Query: 320 MSTPSTLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGYPNGFEVTMDCPNDRYVNDAAI 379 +STP+ LMIAP+L+ LS +FTRPK D AKKLLA+AGYP+GFEVTMDCPNDRYVNDAAI Sbjct: 322 LSTPTALMIAPQLFSLSNDFTRPKSDAAAAKKLLAEAGYPDGFEVTMDCPNDRYVNDAAI 381 Query: 380 CQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGWTPATSDSHNVLHDILG 439 CQA V MLARIGVKV LLAQPKAQYFAKVLKPGG++TSFFMLGWTPA+ DSH VLHD++G Sbjct: 382 CQAAVSMLARIGVKVELLAQPKAQYFAKVLKPGGFKTSFFMLGWTPASLDSHGVLHDVMG 441 Query: 440 CRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDIVIKDYGYIPLH 499 C +DP DATRGEANLGGYCNK++DALTDKVLIE D KRDQLIKQAY+I IKDY YIPLH Sbjct: 442 CGNDPTDATRGEANLGGYCNKELDALTDKVLIETDPGKRDQLIKQAYEIGIKDYSYIPLH 501 Query: 500 QQPLVWGVSKKVKLTQRADNQVLLYWATKQ 529 QQ L WGVSKKVKLTQRADN+VLL+WATKQ Sbjct: 502 QQALAWGVSKKVKLTQRADNRVLLHWATKQ 531 >ref|NP_769517.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48142.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 531 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/531 (78%), Positives = 457/531 (86%), Gaps = 3/531 (0%) Query: 1 MSV-RWSFAAAAVAFVAFAW-PASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGL 58 MSV R FAA +A A PAS+QTL+YANQG+LKSLDPYTL E+TT AH HVY+GL Sbjct: 1 MSVGRTLFAATLAGTLALAVSPASSQTLRYANQGDLKSLDPYTLNESTTHAHLGHVYQGL 60 Query: 59 TARDKDLKIIPALAESWETLSPTKWRFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNF 118 TARDKDLKIIPALAESWET PT+WRFHLRKGVKFHNGDPFTADDV+FSA+RVR KGSN Sbjct: 61 TARDKDLKIIPALAESWETPEPTRWRFHLRKGVKFHNGDPFTADDVVFSADRVRKKGSNM 120 Query: 119 LSNVPADAKFSKVDDYTVDVTLDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTP 178 + + D K KVDDYTVD L SPNPIL + WD WYIMDKKW EENN V PTP +ATTP Sbjct: 121 QTRLAPDVKVVKVDDYTVDFVLPSPNPILHNAWDVWYIMDKKWAEENNVVDPTPVAATTP 180 Query: 179 SYAALHENGTGPFTIESHQPGVKTVFKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLS 238 SYA+LHENGTGPF IESHQPGVKTVFKA YW K E NLKEIIFTPI SDATRVAALLS Sbjct: 181 SYASLHENGTGPFIIESHQPGVKTVFKANPNYWGKVEGNLKEIIFTPISSDATRVAALLS 240 Query: 239 GEVDVIEPVPLQDIQRVNSSGVATVMTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIR 298 GEVDVIEPVP+QDI RV+SS A V+ PE+RTIFIG D RDELLYSNIKGKNPFKDI+ Sbjct: 241 GEVDVIEPVPIQDISRVDSSPNAQVLKGPELRTIFIGFDQMRDELLYSNIKGKNPFKDIK 300 Query: 299 VREAFYKTIDVDLIKTRVMRGMSTPSTLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGY 358 VREAFYK ID++LIKTRVMRG++TPS LMIAPEL+ LSKEFTRPK DPDGAKKLL +AGY Sbjct: 301 VREAFYKAIDIELIKTRVMRGLATPSALMIAPELFILSKEFTRPKFDPDGAKKLLTEAGY 360 Query: 359 PNGFEVTMDCPNDRYVNDAAICQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSF 418 P+GFEVTMDCPNDRYVNDAAICQAVVGMLARIGVK+NLLAQPKAQYFAKVLK GGYQTSF Sbjct: 361 PDGFEVTMDCPNDRYVNDAAICQAVVGMLARIGVKINLLAQPKAQYFAKVLKQGGYQTSF 420 Query: 419 FMLGWTPATSDSHNVLHDILGCRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKR 478 +MLGWTP+T DSHNVL DI+GCRDD K ++RGEANLGGYCNK+ DA+TDKVL+E DTAKR Sbjct: 421 YMLGWTPSTMDSHNVLFDIMGCRDDAK-SSRGEANLGGYCNKEFDAITDKVLVETDTAKR 479 Query: 479 DQLIKQAYDIVIKDYGYIPLHQQPLVWGVSKKVKLTQRADNQVLLYWATKQ 529 +QLIKQAY+I KD+ YIPLHQQ L WGVSKKV L QRADN V+ +WATK+ Sbjct: 480 NQLIKQAYEIGNKDWSYIPLHQQALAWGVSKKVNLPQRADNLVMFHWATKK 530 >ref|YP_001757123.1| extracellular solute-binding protein [Methylobacterium radiotolerans JCM 2831] gb|ACB26440.1| extracellular solute-binding protein family 5 [Methylobacterium radiotolerans JCM 2831] Length = 538 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/505 (65%), Positives = 385/505 (76%), Gaps = 1/505 (0%) Query: 24 QTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLSPTKW 83 ++A QG+LKSLDPY+LKE+ T YE L DK+LK PALAESWET PT+W Sbjct: 32 NVFRFAFQGDLKSLDPYSLKESFTEGMQEAAYEPLVTLDKNLKFAPALAESWETPEPTRW 91 Query: 84 RFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNFLSNVPADAKFSKVDDYTVDVTLDSP 143 RFHLRK VKFH+G PFTADDV+FSA+RVRA GSNF +NVPADA+F KVDDYTVD+ L P Sbjct: 92 RFHLRKNVKFHDGSPFTADDVIFSAQRVRAPGSNFTTNVPADAEFVKVDDYTVDMVLKKP 151 Query: 144 NPILISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTGPFTIESHQPGVKTV 203 NPI I+Q+ +W IM K W E+N V PTP SAT+PSYA LHENGTGPF I HQPGVKTV Sbjct: 152 NPIAIAQFPTWVIMSKAWSEKNGVVQPTPPSATSPSYATLHENGTGPFVIAEHQPGVKTV 211 Query: 204 FKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRVNSSGVATV 263 FK F GYW K E NL E + T I + ATRVAALLSGEVD I+PVPLQD QRVN+SG ATV Sbjct: 212 FKKFDGYWGKVESNLDEAVLTTIANPATRVAALLSGEVDWIDPVPLQDQQRVNASGTATV 271 Query: 264 MTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIRVREAFYKTIDVDLIKTRVMRGMSTP 323 M PE+RTIF+GMD RDEL S++KGKNPFKDI+VREAFY ID D I RVMRG + P Sbjct: 272 MAGPELRTIFLGMDQDRDELKDSSVKGKNPFKDIKVREAFYLAIDEDTIAKRVMRGQAVP 331 Query: 324 STLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGYPNGFEVTMDCPNDRYVNDAAICQAV 383 S LMIAP LY EF RP D AK+L+A AGYP+GF +TMDCPNDRYVND AICQAV Sbjct: 332 SALMIAPALYDRGAEFKRPATDLKKAKELMAQAGYPDGFSLTMDCPNDRYVNDEAICQAV 391 Query: 384 VGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGWTPATSDSHNVLHDILGCRDD 443 V MLARI VKVNL AQPKA+YFAKVL P Y TSF++LGWTP++ DSHN+L++I+GCR Sbjct: 392 VSMLARINVKVNLNAQPKAKYFAKVLAP-NYDTSFYLLGWTPSSLDSHNILYEIVGCRKP 450 Query: 444 PKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDIVIKDYGYIPLHQQPL 503 + RG NL GYC+ +D + DKV E D KRD LIK+ +D++ D+GYIPLHQQ L Sbjct: 451 GDKSGRGGWNLAGYCDPKIDEIADKVEGETDKTKRDALIKEGFDVLNADWGYIPLHQQAL 510 Query: 504 VWGVSKKVKLTQRADNQVLLYWATK 528 WGVSKKV LTQRADN +LLYW +K Sbjct: 511 AWGVSKKVHLTQRADNLLLLYWVSK 535