BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0057.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769519.1| hypothetical protein blr2879 [Bradyrhizobium ja... 382 e-104 ref|YP_487252.1| hypothetical protein RPB_3646 [Rhodopseudomonas... 350 1e-94 ref|YP_568955.1| hypothetical protein RPD_1818 [Rhodopseudomonas... 342 3e-92 ref|NP_949109.1| hypothetical protein RPA3772 [Rhodopseudomonas ... 333 1e-89 ref|YP_001993264.1| PGAP1 family protein [Rhodopseudomonas palus... 332 3e-89 >ref|NP_769519.1| hypothetical protein blr2879 [Bradyrhizobium japonicum USDA 110] dbj|BAC48144.1| blr2879 [Bradyrhizobium japonicum USDA 110] Length = 266 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/242 (76%), Positives = 207/242 (85%) Query: 25 AEARGVLELNSSLLLSPLLMRAPRGDGHPVLALPGFLASDLSMAPMRRYLKELGYDAYAW 84 AEARG+ ELN+SLLLSPLLMRAPRGDGHPVL LPGFLASDLSMAPMRRYL ELGY+A+AW Sbjct: 24 AEARGLFELNASLLLSPLLMRAPRGDGHPVLTLPGFLASDLSMAPMRRYLSELGYEAHAW 83 Query: 85 NMGRNFGGISSRRAALRDLLKRVHEASGRKVSIIGWSLGGVYARDLASQMPELVRSIITL 144 MGRN GG+ R ALR L +H A GRKVS++GWSLGGVYARDLA Q P++VR +ITL Sbjct: 84 RMGRNLGGLGRMREALRTRLAEIHAARGRKVSLVGWSLGGVYARDLALQAPDMVRYVITL 143 Query: 145 GSPFADDIRATNATRLYEVLSGEAVNDIPEIRAAIAGDMPVPTTSIYSRTDGIVNWRTSR 204 GSPFA+D+RATNATRLYE LSGE V D E+R AIAGD+PVP TSIYSR DG+VNWRT Sbjct: 144 GSPFANDVRATNATRLYEALSGERVEDFAELREAIAGDLPVPATSIYSRADGVVNWRTCL 203 Query: 205 VRPSATAENIEVHFASHIGLGVNPAALWAIADRLAQPEGEFRHFDRSGPFAIAYGPAEQA 264 +RPS AENIEVH ASHIGLGVNPAALWA+ADRLAQPEGEF FDR+GPFAIAY P E+A Sbjct: 204 LRPSDHAENIEVHLASHIGLGVNPAALWAVADRLAQPEGEFWPFDRAGPFAIAYAPPERA 263 Query: 265 LS 266 +S Sbjct: 264 IS 265 >ref|YP_487252.1| hypothetical protein RPB_3646 [Rhodopseudomonas palustris HaA2] gb|ABD08341.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 265 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 177/259 (68%), Positives = 209/259 (80%), Gaps = 3/259 (1%) Query: 1 VTSMDRSVDGTERRLRPPSLFLMLAEARGVLELNSSLLLSPLLMRAPRGDGHPVLALPGF 60 + ++DR+ RLRPPSL L+LAEAR +LE N+S+LLSPLL++AP+GDGHPVL LPG Sbjct: 1 MAAVDRAT--PHHRLRPPSLALLLAEARSLLEFNASILLSPLLLQAPKGDGHPVLVLPGL 58 Query: 61 LASDLSMAPMRRYLKELGYDAYAWNMGRNFGGISSRRAALRDLLKRVHEASGRKVSIIGW 120 LASDLS AP+RRYL+ LGY +AW +GRNFGG+ R LR L +HEASGRKVS++GW Sbjct: 59 LASDLSTAPLRRYLRALGYQPFAWELGRNFGGVYRMRDRLRRRLTTIHEASGRKVSVVGW 118 Query: 121 SLGGVYARDLASQMPELVRSIITLGSPFADDIRATNATRLYEVLSGEAVNDI-PEIRAAI 179 SLGGVYARDLA P+++R I+TLGSPF+ DI ATNA R+YE LSGE +++I P+ A+ Sbjct: 119 SLGGVYARDLALHAPQMIRGIVTLGSPFSGDITATNARRVYEKLSGEDLDEIRPDDLQAL 178 Query: 180 AGDMPVPTTSIYSRTDGIVNWRTSRVRPSATAENIEVHFASHIGLGVNPAALWAIADRLA 239 DMPVP TSIYSRTDGIVNWRTSR+RPS TAENIEV ASHIGL VNPA LWAIADRLA Sbjct: 179 TSDMPVPATSIYSRTDGIVNWRTSRLRPSPTAENIEVLLASHIGLTVNPAVLWAIADRLA 238 Query: 240 QPEGEFRHFDRSGPFAIAY 258 QPEG F FDRSGPFA+AY Sbjct: 239 QPEGAFAPFDRSGPFALAY 257 >ref|YP_568955.1| hypothetical protein RPD_1818 [Rhodopseudomonas palustris BisB5] gb|ABE39054.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 262 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 177/260 (68%), Positives = 208/260 (80%), Gaps = 5/260 (1%) Query: 1 VTSMDRSVDGTERRLRPPSLFLMLAEARGVLELNSSLLLSPLLMRAPRGDGHPVLALPGF 60 + ++DR+ RLRPPS+ L+LAEAR + E N+S+LLSPLL+RAP+GDGHPVL LPG Sbjct: 1 MAAVDRA--AKHDRLRPPSVALLLAEARSLFEFNASVLLSPLLLRAPKGDGHPVLVLPGL 58 Query: 61 LASDLSMAPMRRYLKELGYDAYAWNMGRNFGGISSRRAALRDLLKRVHEASGRKVSIIGW 120 LASDLS AP+RRYL+ LGY +AW +GRNFGG+ R LR L VH ASGRKVS++GW Sbjct: 59 LASDLSTAPLRRYLRHLGYQTFAWELGRNFGGVYRMRDRLRRRLDAVHAASGRKVSLVGW 118 Query: 121 SLGGVYARDLASQMPELVRSIITLGSPFADDIRATNATRLYEVLSGEAVNDI--PEIRAA 178 SLGGVYARDLA PE +R IITLGSPF+ DI ATNA R+YE LSGE ++ + ++R A Sbjct: 119 SLGGVYARDLALHAPETIRGIITLGSPFSGDITATNARRVYEKLSGEPLDGVRLDDLR-A 177 Query: 179 IAGDMPVPTTSIYSRTDGIVNWRTSRVRPSATAENIEVHFASHIGLGVNPAALWAIADRL 238 +AGDMPVPTTSIYSRTDGIVNWRTS +RPS AENIEV ASHIGL VN A LWAIADRL Sbjct: 178 LAGDMPVPTTSIYSRTDGIVNWRTSLLRPSPNAENIEVLLASHIGLTVNAAVLWAIADRL 237 Query: 239 AQPEGEFRHFDRSGPFAIAY 258 AQPEGEF+ FDR+GPFA+AY Sbjct: 238 AQPEGEFQPFDRAGPFAMAY 257 >ref|NP_949109.1| hypothetical protein RPA3772 [Rhodopseudomonas palustris CGA009] emb|CAE29213.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 263 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 175/257 (68%), Positives = 199/257 (77%), Gaps = 1/257 (0%) Query: 5 DRSVDGTERRLRPPSLFLMLAEARGVLELNSSLLLSPLLMRAPRGDGHPVLALPGFLASD 64 DR RL+PPS+ L+LAEAR E N+SLLLSPLL++APRGDGHPVL LPG LASD Sbjct: 4 DRGASQNRERLKPPSVALLLAEARSFFEFNASLLLSPLLLQAPRGDGHPVLVLPGLLASD 63 Query: 65 LSMAPMRRYLKELGYDAYAWNMGRNFGGISSRRAALRDLLKRVHEASGRKVSIIGWSLGG 124 LS APMRRYLK+LGY +AW +GRN GGI RA LRD L VHE +GRKVS++GWSLGG Sbjct: 64 LSTAPMRRYLKQLGYQVFAWELGRNLGGIYRMRARLRDRLAAVHETTGRKVSLVGWSLGG 123 Query: 125 VYARDLASQMPELVRSIITLGSPFADDIRATNATRLYEVLSGEAVNDIP-EIRAAIAGDM 183 VYARDLA P++VR IITLGSPF D+ ATNA R+YE LSGE + ++ E + G+M Sbjct: 124 VYARDLALHAPDMVRDIITLGSPFTGDVTATNAKRIYEKLSGEELTEVHLEDLEPLGGEM 183 Query: 184 PVPTTSIYSRTDGIVNWRTSRVRPSATAENIEVHFASHIGLGVNPAALWAIADRLAQPEG 243 PVPTTSIYSRTDGIVNWRTS++ PS AENIEV ASHIGL VN A LWAIADRLAQPEG Sbjct: 184 PVPTTSIYSRTDGIVNWRTSQLAPSPRAENIEVVLASHIGLIVNAAVLWAIADRLAQPEG 243 Query: 244 EFRHFDRSGPFAIAYGP 260 F+ FDRSGPF AY P Sbjct: 244 VFKPFDRSGPFGFAYAP 260 >ref|YP_001993264.1| PGAP1 family protein [Rhodopseudomonas palustris TIE-1] gb|ACF02789.1| PGAP1 family protein [Rhodopseudomonas palustris TIE-1] Length = 263 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 175/257 (68%), Positives = 198/257 (77%), Gaps = 1/257 (0%) Query: 5 DRSVDGTERRLRPPSLFLMLAEARGVLELNSSLLLSPLLMRAPRGDGHPVLALPGFLASD 64 DR RL+PPS+ L+LAEAR E N+SLLLSPLL++APRGDGHPVL LPG LASD Sbjct: 4 DRGASQNRERLKPPSVALLLAEARSFFEFNASLLLSPLLLQAPRGDGHPVLVLPGLLASD 63 Query: 65 LSMAPMRRYLKELGYDAYAWNMGRNFGGISSRRAALRDLLKRVHEASGRKVSIIGWSLGG 124 LS APMRRYLK+LGY +AW +GRN GGI RA LRD L VHE +GRKVS++GWSLGG Sbjct: 64 LSTAPMRRYLKQLGYQVFAWELGRNLGGIYRMRARLRDRLAAVHETTGRKVSLVGWSLGG 123 Query: 125 VYARDLASQMPELVRSIITLGSPFADDIRATNATRLYEVLSGEAVNDIP-EIRAAIAGDM 183 VYARDLA P++VR IITLGSPF D+ ATNA R+YE LSGE + ++ E + G+M Sbjct: 124 VYARDLALHAPDMVRDIITLGSPFTGDVTATNAKRIYEKLSGEELTEVHLEDLEPLGGEM 183 Query: 184 PVPTTSIYSRTDGIVNWRTSRVRPSATAENIEVHFASHIGLGVNPAALWAIADRLAQPEG 243 PVPTTSIYSRTDGIVNWRTS++ PS AENIEV ASHIGL VN A LWAIADRLAQPEG Sbjct: 184 PVPTTSIYSRTDGIVNWRTSQLAPSPRAENIEVVLASHIGLIVNAAVLWAIADRLAQPEG 243 Query: 244 EFRHFDRSGPFAIAYGP 260 F FDRSGPF AY P Sbjct: 244 VFTPFDRSGPFGFAYAP 260