BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0036.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769534.1| phenylacetic acid degradation protein [Bradyrhi... 293 8e-78 ref|ZP_08630013.1| phenylacetate-CoA oxygenase, PaaJ subunit [Br... 290 4e-77 ref|YP_779927.1| phenylacetate-CoA oxygenase subunit PaaJ [Rhodo... 273 9e-72 ref|YP_487244.1| phenylacetate-CoA oxygenase, PaaJ subunit [Rhod... 271 2e-71 ref|NP_949102.1| phenylacetate-CoA oxygenase subunit PaaJ [Rhodo... 271 3e-71 >ref|NP_769534.1| phenylacetic acid degradation protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48159.1| paaD [Bradyrhizobium japonicum USDA 110] Length = 167 Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 141/166 (84%), Positives = 149/166 (89%) Query: 1 VTVALSDADLRRRAWSAAAQVVDPEIPVLTIADLGVLRDVAVHDGHVEVAITPTYSGCPA 60 VTV+ S ADLRRRAW AAA VVDPEIPVLTIADLGVLRDV + HVEVAITPTYSGCPA Sbjct: 2 VTVSESGADLRRRAWDAAASVVDPEIPVLTIADLGVLRDVVLDGDHVEVAITPTYSGCPA 61 Query: 61 MNMIALEIELALEREGIHQPKVRTVLSPAWTTDWMSEDGRRKLKEYGIAPPLPGSSRRAL 120 MNMIALEIE+ALER G H+PKVRTVLSPAWTTDWMSE+GRRKL+ YGIAPP +SRRAL Sbjct: 62 MNMIALEIEVALERAGFHRPKVRTVLSPAWTTDWMSEEGRRKLRAYGIAPPQASNSRRAL 121 Query: 121 FGEQQVACPQCGSGDTELLSEFGSTSCKALWRCKSCREPFDYFKCH 166 FGEQ VACPQCGS TELLSEFGSTSCKALWRCK+CREPFDYFKCH Sbjct: 122 FGEQSVACPQCGSDRTELLSEFGSTSCKALWRCKACREPFDYFKCH 167 >ref|ZP_08630013.1| phenylacetate-CoA oxygenase, PaaJ subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07382.1| phenylacetate-CoA oxygenase, PaaJ subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 166 Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 139/166 (83%), Positives = 147/166 (88%) Query: 1 VTVALSDADLRRRAWSAAAQVVDPEIPVLTIADLGVLRDVAVHDGHVEVAITPTYSGCPA 60 + A + DLR+ AW+AAAQVVDPEIPVLTIADLGVLRDV V D VEVAITPTYSGCPA Sbjct: 1 MVTASTSRDLRQTAWNAAAQVVDPEIPVLTIADLGVLRDVTVTDDGVEVAITPTYSGCPA 60 Query: 61 MNMIALEIELALEREGIHQPKVRTVLSPAWTTDWMSEDGRRKLKEYGIAPPLPGSSRRAL 120 MNMIALEIELAL REGI PK+RTVLSPAWTTDWMSE GR+KLKEYGIAPP G RRAL Sbjct: 61 MNMIALEIELALAREGIRNPKIRTVLSPAWTTDWMSEQGRQKLKEYGIAPPQAGGGRRAL 120 Query: 121 FGEQQVACPQCGSGDTELLSEFGSTSCKALWRCKSCREPFDYFKCH 166 FGEQQVACPQCGS DTE+LSEFGSTSCKALWRCK+CREPFDYFKCH Sbjct: 121 FGEQQVACPQCGSVDTEVLSEFGSTSCKALWRCKTCREPFDYFKCH 166 >ref|YP_779927.1| phenylacetate-CoA oxygenase subunit PaaJ [Rhodopseudomonas palustris BisA53] gb|ABJ04947.1| phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris BisA53] Length = 167 Score = 273 bits (697), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 133/166 (80%), Positives = 148/166 (89%) Query: 1 VTVALSDADLRRRAWSAAAQVVDPEIPVLTIADLGVLRDVAVHDGHVEVAITPTYSGCPA 60 V+ + DLR+RAW+AAAQVVDPEIPVLTI DLGVLR+V + DG VEVAITPTYSGCPA Sbjct: 2 VSAVTTTDDLRQRAWAAAAQVVDPEIPVLTIEDLGVLREVKIVDGRVEVAITPTYSGCPA 61 Query: 61 MNMIALEIELALEREGIHQPKVRTVLSPAWTTDWMSEDGRRKLKEYGIAPPLPGSSRRAL 120 MNMIAL+IELALE EGI +P VRTVLSPAWTTDWMSEDGRRKL++YGIAPP P S+RRAL Sbjct: 62 MNMIALQIELALESEGIDKPVVRTVLSPAWTTDWMSEDGRRKLRDYGIAPPQPASTRRAL 121 Query: 121 FGEQQVACPQCGSGDTELLSEFGSTSCKALWRCKSCREPFDYFKCH 166 F +QVACPQCGS DT++LS+FGSTSCKALWRC SCREPFDYFKCH Sbjct: 122 FSVEQVACPQCGSSDTQVLSDFGSTSCKALWRCNSCREPFDYFKCH 167 >ref|YP_487244.1| phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris HaA2] gb|ABD08333.1| Phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris HaA2] Length = 167 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/166 (77%), Positives = 141/166 (84%) Query: 1 VTVALSDADLRRRAWSAAAQVVDPEIPVLTIADLGVLRDVAVHDGHVEVAITPTYSGCPA 60 VT A+SD++LR RAW AAA VVDPEIPVLTIADLGVLRD++V+DG VEV ITPTYSGCPA Sbjct: 2 VTRAISDSELRARAWDAAATVVDPEIPVLTIADLGVLRDISVNDGRVEVTITPTYSGCPA 61 Query: 61 MNMIALEIELALEREGIHQPKVRTVLSPAWTTDWMSEDGRRKLKEYGIAPPLPGSSRRAL 120 MNMI LEIE AL R GI VRTVL+PAWTTDWMS +GR KLK+YGIAPP + RRAL Sbjct: 62 MNMITLEIETALARAGIGDASVRTVLAPAWTTDWMSAEGRAKLKDYGIAPPQAATGRRAL 121 Query: 121 FGEQQVACPQCGSGDTELLSEFGSTSCKALWRCKSCREPFDYFKCH 166 FG ++ACPQCGS DTE LSEFGSTSCKALWRCK CREPFDYFKCH Sbjct: 122 FGALEIACPQCGSIDTEQLSEFGSTSCKALWRCKVCREPFDYFKCH 167 >ref|NP_949102.1| phenylacetate-CoA oxygenase subunit PaaJ [Rhodopseudomonas palustris CGA009] emb|CAE29206.1| putative phenylacetic acid degradation protein PaaD [Rhodopseudomonas palustris CGA009] Length = 167 Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 141/166 (84%) Query: 1 VTVALSDADLRRRAWSAAAQVVDPEIPVLTIADLGVLRDVAVHDGHVEVAITPTYSGCPA 60 VT+ SDA+LR+RAW AAA V DPEIPVLTIADLGVLR+V V G VEVAITPTYSGCPA Sbjct: 2 VTLTGSDAELRQRAWDAAATVCDPEIPVLTIADLGVLREVRVEHGRVEVAITPTYSGCPA 61 Query: 61 MNMIALEIELALEREGIHQPKVRTVLSPAWTTDWMSEDGRRKLKEYGIAPPLPGSSRRAL 120 MNMIALEIE AL R GI Q +V TVL+PAWTTDWMSE GR KLK+YGIAPP SRRAL Sbjct: 62 MNMIALEIETALARAGIAQARVTTVLAPAWTTDWMSEAGRAKLKDYGIAPPQATGSRRAL 121 Query: 121 FGEQQVACPQCGSGDTELLSEFGSTSCKALWRCKSCREPFDYFKCH 166 FG ++ACPQCGS DTE LSEFGSTSCKALWRCKSCREPFDYFKCH Sbjct: 122 FGTLEIACPQCGSTDTEQLSEFGSTSCKALWRCKSCREPFDYFKCH 167