BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0035.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769535.1| ferredoxin reductase electron transfer componen... 430 e-118 ref|ZP_08630012.1| phenylacetate-CoA oxygenase/reductase, PaaK s... 412 e-113 ref|YP_779928.1| phenylacetate-CoA oxygenase/reductase subunit P... 397 e-108 ref|YP_568965.1| phenylacetate-CoA oxygenase/reductase subunit P... 394 e-108 ref|YP_487243.1| phenylacetate-CoA oxygenase/reductase, PaaK sub... 389 e-106 >ref|NP_769535.1| ferredoxin reductase electron transfer component protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48160.1| paaE [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/268 (77%), Positives = 233/268 (86%), Gaps = 4/268 (1%) Query: 2 STPRFHRLSVSDLRHEASDAISMTFAIPDDLQGDYRFTPGQYLTLRTMMDGEEVRRSYSI 61 + PRFHRL+V+DLR EASDAIS+TFAIP +L DY FTPGQYLTLRTM+DGEEVRRSYSI Sbjct: 22 AAPRFHRLAVNDLRREASDAISVTFAIPSELASDYAFTPGQYLTLRTMLDGEEVRRSYSI 81 Query: 62 CSGPDDGELRIAVKKVDGGAFSNWAAEELKAGDELDVMTPTGRFGVAHAPGEARTYVGFA 121 CSGPDDGE+RIAVKKVDGGAFS+WAA+ELK GDELDVMTPTGRFG R +VGFA Sbjct: 82 CSGPDDGEIRIAVKKVDGGAFSSWAADELKCGDELDVMTPTGRFGAVAPADTGRIHVGFA 141 Query: 122 AGSGITPILSIIKGVLAREPDSRFFLFYGNRSTEGVMFREALEELKDRFMQRLSVFHVIS 181 AGSGITPILSI+KGVLAREPDSRFFLFYGNR+T+ +MF EALEELKDRF+ RLS+FHVIS Sbjct: 142 AGSGITPILSIVKGVLAREPDSRFFLFYGNRTTDNIMFLEALEELKDRFIDRLSIFHVIS 201 Query: 182 GEEQDIPILHGRLDGEKVRVLLRSLVPAATVDHVFVCGPAAMSETIEATCREIGIAEERI 241 GEEQDIPILHGRLDG+KVRVLLRSLVPA +VDHVF+CGP+ MSE IEATCR++GIAEERI Sbjct: 202 GEEQDIPILHGRLDGDKVRVLLRSLVPAGSVDHVFICGPSGMSEDIEATCRDLGIAEERI 261 Query: 242 HVERFVSEFXAAEGDRRSDHRRQAPRGP 269 HVERFVSEF G + + AP P Sbjct: 262 HVERFVSEF----GGKPRPKKAVAPDAP 285 >ref|ZP_08630012.1| phenylacetate-CoA oxygenase/reductase, PaaK subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07381.1| phenylacetate-CoA oxygenase/reductase, PaaK subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 359 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/267 (74%), Positives = 228/267 (85%), Gaps = 4/267 (1%) Query: 3 TPRFHRLSVSDLRHEASDAISMTFAIPDDLQGDYRFTPGQYLTLRTMMDGEEVRRSYSIC 62 P+FHRL+V+DL+ E +DA+SMTFAIP +L DY F PGQYLTLRT MDGEEVRRSYSIC Sbjct: 4 VPKFHRLAVADLKRETADAVSMTFAIPGELTKDYAFAPGQYLTLRTTMDGEEVRRSYSIC 63 Query: 63 SGPDDGELRIAVKKVDGGAFSNWAAEELKAGDELDVMTPTGRFGVAHAPGEARTYVGFAA 122 S PDD ELRIAVKKVDGGAFS+WA EELKAGD+LDVMTPTGRFGVAHAP +AR +VGFAA Sbjct: 64 SSPDDHELRIAVKKVDGGAFSSWALEELKAGDKLDVMTPTGRFGVAHAPDQARIHVGFAA 123 Query: 123 GSGITPILSIIKGVLAREPDSRFFLFYGNRSTEGVMFREALEELKDRFMQRLSVFHVISG 182 GSGITPI+SI++G+LAREP+SRFFLFYGNR+T G++FREALEELKDRFM RLSVFHV+S Sbjct: 124 GSGITPIMSIVRGILAREPNSRFFLFYGNRATNGILFREALEELKDRFMGRLSVFHVLSQ 183 Query: 183 EEQDIPILHGRLDGEKVRVLLRSLVPAATVDHVFVCGPAAMSETIEATCREIGIAEERIH 242 EEQD+PIL+GRLD EKV VLLRS+VPAA +DHVFVCGP AMSE IE TC ++GI +R+H Sbjct: 184 EEQDLPILYGRLDREKVEVLLRSMVPAAAIDHVFVCGPVAMSEEIEKTCIDMGIPADRVH 243 Query: 243 VERFVSEFXAAEGDRRSDHRRQAPRGP 269 VERFVSEF G + + AP P Sbjct: 244 VERFVSEF----GGKPRPKVQVAPEAP 266 >ref|YP_779928.1| phenylacetate-CoA oxygenase/reductase subunit PaaK [Rhodopseudomonas palustris BisA53] gb|ABJ04948.1| phenylacetate-CoA oxygenase/reductase, PaaK subunit [Rhodopseudomonas palustris BisA53] Length = 360 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/246 (74%), Positives = 219/246 (89%) Query: 3 TPRFHRLSVSDLRHEASDAISMTFAIPDDLQGDYRFTPGQYLTLRTMMDGEEVRRSYSIC 62 TP+FHRL+V+DLR E DAISM+FAIPD+L DY F PGQYLTLRT +DGEEVRRSYSIC Sbjct: 5 TPKFHRLAVADLRRETPDAISMSFAIPDELTQDYAFAPGQYLTLRTTLDGEEVRRSYSIC 64 Query: 63 SGPDDGELRIAVKKVDGGAFSNWAAEELKAGDELDVMTPTGRFGVAHAPGEARTYVGFAA 122 SGPDD E+RIAVKKV GGAFS WA +ELK GDELDVMTPTGRFG+ HAP EART+VGFAA Sbjct: 65 SGPDDHEIRIAVKKVQGGAFSGWALDELKVGDELDVMTPTGRFGITHAPNEARTFVGFAA 124 Query: 123 GSGITPILSIIKGVLAREPDSRFFLFYGNRSTEGVMFREALEELKDRFMQRLSVFHVISG 182 GSGITP++SII+GVLAREP+SRFFLFYGNR++ G++F+EAL++LKDRFM R ++FHV+S Sbjct: 125 GSGITPLISIIRGVLAREPNSRFFLFYGNRTSAGILFQEALQQLKDRFMGRFALFHVLSQ 184 Query: 183 EEQDIPILHGRLDGEKVRVLLRSLVPAATVDHVFVCGPAAMSETIEATCREIGIAEERIH 242 EEQD+PIL+GRLD +KV +LLR++VPAA+VDHVFVCGP AMSE I A C E+G+ E+RIH Sbjct: 185 EEQDVPILNGRLDRDKVALLLRAMVPAASVDHVFVCGPTAMSEEIAAVCGELGVPEDRIH 244 Query: 243 VERFVS 248 +ERFV+ Sbjct: 245 LERFVA 250 >ref|YP_568965.1| phenylacetate-CoA oxygenase/reductase subunit PaaK [Rhodopseudomonas palustris BisB5] gb|ABE39064.1| Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Rhodopseudomonas palustris BisB5] Length = 362 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/247 (74%), Positives = 216/247 (87%) Query: 2 STPRFHRLSVSDLRHEASDAISMTFAIPDDLQGDYRFTPGQYLTLRTMMDGEEVRRSYSI 61 + PRFH L++SDLR E+ DAIS+ FAIP +L YRF PGQYLTLRT MDGEEVRRSYSI Sbjct: 6 TIPRFHPLTISDLRRESGDAISLAFAIPPELADAYRFAPGQYLTLRTTMDGEEVRRSYSI 65 Query: 62 CSGPDDGELRIAVKKVDGGAFSNWAAEELKAGDELDVMTPTGRFGVAHAPGEARTYVGFA 121 CSGPDDGELRIAVKKVDGGAFS WA EELKAGD +DVMTPTGRFGVAHA E RTYVGFA Sbjct: 66 CSGPDDGELRIAVKKVDGGAFSVWATEELKAGDTIDVMTPTGRFGVAHAVDEVRTYVGFA 125 Query: 122 AGSGITPILSIIKGVLAREPDSRFFLFYGNRSTEGVMFREALEELKDRFMQRLSVFHVIS 181 AGSGITPILS++KGVLARE SRFFLFYGNR+T+ ++FRE+LE LKDR++ R +VFHV+S Sbjct: 126 AGSGITPILSLVKGVLAREKASRFFLFYGNRTTDQILFRESLETLKDRYLDRFAVFHVLS 185 Query: 182 GEEQDIPILHGRLDGEKVRVLLRSLVPAATVDHVFVCGPAAMSETIEATCREIGIAEERI 241 EEQD+P++ GRLD +KVR+LL ++VPA++VDHVFVCGP MS+ +EA CRE+G+AEERI Sbjct: 186 QEEQDVPVMQGRLDRDKVRLLLTAMVPASSVDHVFVCGPTGMSDDVEAACRELGLAEERI 245 Query: 242 HVERFVS 248 HVERFVS Sbjct: 246 HVERFVS 252 >ref|YP_487243.1| phenylacetate-CoA oxygenase/reductase, PaaK subunit [Rhodopseudomonas palustris HaA2] gb|ABD08332.1| Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Rhodopseudomonas palustris HaA2] Length = 365 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/247 (74%), Positives = 211/247 (85%) Query: 2 STPRFHRLSVSDLRHEASDAISMTFAIPDDLQGDYRFTPGQYLTLRTMMDGEEVRRSYSI 61 + PRFH L + DLR E DAIS++F +P DL Y+F GQYLTLRT MDGEEVRRSYSI Sbjct: 9 TIPRFHPLVIRDLRREGRDAISLSFTVPPDLADAYQFAAGQYLTLRTTMDGEEVRRSYSI 68 Query: 62 CSGPDDGELRIAVKKVDGGAFSNWAAEELKAGDELDVMTPTGRFGVAHAPGEARTYVGFA 121 CSGPDDGELRIAVKK+DGGAFS WA EELKAGD LDVMTPTGRFGVA AP E RTYVGFA Sbjct: 69 CSGPDDGELRIAVKKIDGGAFSVWATEELKAGDTLDVMTPTGRFGVAPAPDEVRTYVGFA 128 Query: 122 AGSGITPILSIIKGVLAREPDSRFFLFYGNRSTEGVMFREALEELKDRFMQRLSVFHVIS 181 AGSGITPILS+IK VLAREP SRFFLFYGNRST+ ++FR+ LE LKDR++QR +VFHV+S Sbjct: 129 AGSGITPILSLIKAVLAREPASRFFLFYGNRSTDQILFRDTLETLKDRYLQRFAVFHVLS 188 Query: 182 GEEQDIPILHGRLDGEKVRVLLRSLVPAATVDHVFVCGPAAMSETIEATCREIGIAEERI 241 EEQD+P++ GRLD +KVR+LL +++PAA+VDHVFVCGP MS+ +EA CRE+GIAE RI Sbjct: 189 QEEQDVPVMQGRLDRDKVRLLLTAMLPAASVDHVFVCGPIGMSDDVEAACRELGIAEARI 248 Query: 242 HVERFVS 248 HVERFVS Sbjct: 249 HVERFVS 255