BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0034.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769536.1| phenylacetic acid degradation protein [Bradyrhi... 256 8e-67 ref|YP_001204583.1| phenylacetic acid degradation protein [Brady... 221 2e-56 ref|YP_001238904.1| phenylacetic acid degradation protein [Brady... 219 1e-55 ref|YP_004110098.1| phenylacetic acid degradation protein PaaD [... 213 5e-54 ref|NP_947070.1| putative phenylacetic acid degredation protein ... 212 2e-53 >ref|NP_769536.1| phenylacetic acid degradation protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48161.1| phenylacetic acid degradation protein [Bradyrhizobium japonicum USDA 110] Length = 158 Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 121/148 (81%), Positives = 133/148 (89%) Query: 1 VNVKATLSPEDVARACADAMWKEDDASKGLGMELVEIRPGQAVMAMTVQPHMVNGQRVCH 60 VNVKA LSPED+ARACADAMW EDDASKGLGME+VEI PG A +AMTV+P MVNGQR+ H Sbjct: 10 VNVKAALSPEDIARACADAMWAEDDASKGLGMEIVEIGPGFATLAMTVRPDMVNGQRIAH 69 Query: 61 GGYIFTLADSAFAFACNSRNDRAVAAQGNVTFIRPGKLGDRLVATAREISRSGRSGIYDV 120 GG+IFTLADSAFAFACNS N+R VAAQG +TFI PG+LGDRLVA ARE++RSGRSGIYDV Sbjct: 70 GGFIFTLADSAFAFACNSHNERVVAAQGQITFITPGRLGDRLVAKAREVTRSGRSGIYDV 129 Query: 121 RVTSGDSVIAEFRGHSRVIPGTWLPDTD 148 RVT+GD VIAEFRGHSRVIPGTWLP D Sbjct: 130 RVTAGDIVIAEFRGHSRVIPGTWLPAHD 157 >ref|YP_001204583.1| phenylacetic acid degradation protein [Bradyrhizobium sp. ORS 278] emb|CAL76346.1| phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain [Bradyrhizobium sp. ORS 278] Length = 153 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 103/140 (73%), Positives = 123/140 (87%) Query: 5 ATLSPEDVARACADAMWKEDDASKGLGMELVEIRPGQAVMAMTVQPHMVNGQRVCHGGYI 64 A LSP+ +ARACADAMW++D AS+GLGM++VEI PG+A + MTVQPHMVNG + HGG+I Sbjct: 5 APLSPDALARACADAMWQDDRASQGLGMQIVEIGPGRATLQMTVQPHMVNGHGIAHGGFI 64 Query: 65 FTLADSAFAFACNSRNDRAVAAQGNVTFIRPGKLGDRLVATAREISRSGRSGIYDVRVTS 124 FTLADSAFAFACNS NDR VAAQG+++FIRPGKLGD L A A+E+SRSGRSGIYDVRVT+ Sbjct: 65 FTLADSAFAFACNSHNDRTVAAQGSISFIRPGKLGDVLTARAQEVSRSGRSGIYDVRVTA 124 Query: 125 GDSVIAEFRGHSRVIPGTWL 144 G++VIAEFRGHSR I GT + Sbjct: 125 GETVIAEFRGHSRSIGGTLV 144 >ref|YP_001238904.1| phenylacetic acid degradation protein [Bradyrhizobium sp. BTAi1] gb|ABQ34998.1| phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain [Bradyrhizobium sp. BTAi1] Length = 152 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/141 (70%), Positives = 122/141 (86%) Query: 5 ATLSPEDVARACADAMWKEDDASKGLGMELVEIRPGQAVMAMTVQPHMVNGQRVCHGGYI 64 ATLSP+ +ARACA+AMW++D AS+GLGM++++I PG+A + MT+QPHMVNG + HGG+I Sbjct: 5 ATLSPDALARACANAMWQDDRASQGLGMQIIDIGPGRATLQMTIQPHMVNGHGIAHGGFI 64 Query: 65 FTLADSAFAFACNSRNDRAVAAQGNVTFIRPGKLGDRLVATAREISRSGRSGIYDVRVTS 124 FTLADSAFAFACNS NDR VAAQG+++FIRPGKLGD L A+A EISRSGRSGIYDVRVT+ Sbjct: 65 FTLADSAFAFACNSHNDRTVAAQGSISFIRPGKLGDVLTASASEISRSGRSGIYDVRVTA 124 Query: 125 GDSVIAEFRGHSRVIPGTWLP 145 +VIAEFRGHSR I G +P Sbjct: 125 AGTVIAEFRGHSRSIGGALVP 145 >ref|YP_004110098.1| phenylacetic acid degradation protein PaaD [Rhodopseudomonas palustris DX-1] gb|ADU45365.1| phenylacetic acid degradation protein PaaD [Rhodopseudomonas palustris DX-1] Length = 152 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/145 (71%), Positives = 118/145 (81%) Query: 1 VNVKATLSPEDVARACADAMWKEDDASKGLGMELVEIRPGQAVMAMTVQPHMVNGQRVCH 60 + V+ LS +++ARACADAMW D ASKGLGME+VEI PG A +AMTV MVNG + H Sbjct: 1 MTVQDELSADELARACADAMWANDHASKGLGMEIVEIGPGFATLAMTVTTEMVNGHGIAH 60 Query: 61 GGYIFTLADSAFAFACNSRNDRAVAAQGNVTFIRPGKLGDRLVATAREISRSGRSGIYDV 120 GG+IFTLADSAFA+ACNS ND VAAQG ++FIRPGKLG RLVA+ARE+SRSGRSGIYDV Sbjct: 61 GGFIFTLADSAFAYACNSYNDSTVAAQGAISFIRPGKLGARLVASAREVSRSGRSGIYDV 120 Query: 121 RVTSGDSVIAEFRGHSRVIPGTWLP 145 RVTSG VIAEFRGHSR I G +P Sbjct: 121 RVTSGSMVIAEFRGHSRAIGGALVP 145 >ref|NP_947070.1| putative phenylacetic acid degredation protein [Rhodopseudomonas palustris CGA009] emb|CAE27165.1| putative phenylacetic acid degredation protein [Rhodopseudomonas palustris CGA009] Length = 157 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/144 (71%), Positives = 115/144 (79%) Query: 2 NVKATLSPEDVARACADAMWKEDDASKGLGMELVEIRPGQAVMAMTVQPHMVNGQRVCHG 61 +A SP+ +ARACADAMW D ASK LGME+VEI G A +AMTV MVNG + HG Sbjct: 7 QTQAEPSPDQLARACADAMWANDHASKALGMEIVEIGAGSATLAMTVTTDMVNGHGIAHG 66 Query: 62 GYIFTLADSAFAFACNSRNDRAVAAQGNVTFIRPGKLGDRLVATAREISRSGRSGIYDVR 121 G+IFTLADSAFA+ACNS ND VAAQG +TFIRPGKLG RLVA ARE+SRSGRSGIYDVR Sbjct: 67 GFIFTLADSAFAYACNSYNDSTVAAQGAITFIRPGKLGARLVAAAREVSRSGRSGIYDVR 126 Query: 122 VTSGDSVIAEFRGHSRVIPGTWLP 145 VTSG +VIAEFRGHSR I GT +P Sbjct: 127 VTSGSTVIAEFRGHSRSIGGTLVP 150