BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0033.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004110099.1| phenylacetate-CoA ligase [Rhodopseudomonas p... 815 0.0 ref|NP_769537.1| phenylacetate-coenzyme A ligase [Bradyrhizobium... 811 0.0 ref|YP_001990921.1| phenylacetate-CoA ligase [Rhodopseudomonas p... 808 0.0 ref|NP_947069.1| phenylacetyl-CoA ligase [Rhodopseudomonas palus... 807 0.0 ref|YP_568966.1| phenylacetate-CoA ligase [Rhodopseudomonas palu... 805 0.0 >ref|YP_004110099.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris DX-1] gb|ADU45366.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris DX-1] Length = 443 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/442 (86%), Positives = 413/442 (93%) Query: 1 MATAKLKVKDSGYHAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVH 60 MA ++K Y+ ELD AERASRDEI ALQT+RLAWSLKHAYDNVAHYR AFDA GVH Sbjct: 1 MAATVHQIKPGTYNPELDDAERASRDEITALQTKRLAWSLKHAYDNVAHYRSAFDAKGVH 60 Query: 61 PSDFRQLPDLAKFPFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADI 120 PSDFRQL DL+KFPFTVKTDLRDNYPF MFAVPRE LVRVHASSGTTGKPIVVGYT DI Sbjct: 61 PSDFRQLSDLSKFPFTVKTDLRDNYPFKMFAVPRENLVRVHASSGTTGKPIVVGYTANDI 120 Query: 121 DTWADVMARSIRAAGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQV 180 DTWA VMARS+RAAG R GM++HN+YGYGLFTGGLGAHYG E+LGCTV+P+SGGMTERQV Sbjct: 121 DTWATVMARSLRAAGARRGMIIHNSYGYGLFTGGLGAHYGGEKLGCTVVPVSGGMTERQV 180 Query: 181 QLVNDFRPDIITVTPSYMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFD 240 QL+NDFRPDIITVTPSYMLAILDEFKRQGLDPR SSLK+G+FGAEPWTNAMR EIEQAFD Sbjct: 181 QLINDFRPDIITVTPSYMLAILDEFKRQGLDPRASSLKYGVFGAEPWTNAMRAEIEQAFD 240 Query: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTS 300 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDP TG+VLPDGEKGELVFTS Sbjct: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPETGEVLPDGEKGELVFTS 300 Query: 301 LTKEAFPIIRYRTRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLA 360 LTKEAFP++RYRTRDLTRLLPG+ARPGMRRMEK+TGRSDDMIILRGVNVFPTQIEE LLA Sbjct: 301 LTKEAFPVVRYRTRDLTRLLPGTARPGMRRMEKITGRSDDMIILRGVNVFPTQIEEVLLA 360 Query: 361 TDWCGGHFVIELTREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRV 420 TDWCGGHF+IELTREGRMDEMTVLAEARPESWDG GLV HAE+V+A+IKNTIGIST ++V Sbjct: 361 TDWCGGHFIIELTREGRMDEMTVLAEARPESWDGAGLVPHAERVAAYIKNTIGISTTIKV 420 Query: 421 VAPETLERSLGKAKRVYDKRPK 442 V P+TLERSLGKA+RV+DKRPK Sbjct: 421 VPPDTLERSLGKARRVFDKRPK 442 >ref|NP_769537.1| phenylacetate-coenzyme A ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC48162.1| Phenylacetate-coenzyme A ligase [Bradyrhizobium japonicum USDA 110] Length = 462 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/442 (86%), Positives = 413/442 (93%) Query: 1 MATAKLKVKDSGYHAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVH 60 MA +LK + Y AE+DA ERASRDEIMALQ +RL WSLKHAYDNVAHYRKAFD AGVH Sbjct: 20 MALTRLKEGGTSYRAEMDAHERASRDEIMALQKQRLGWSLKHAYDNVAHYRKAFDKAGVH 79 Query: 61 PSDFRQLPDLAKFPFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADI 120 PSDFR+L DLAKFPFTVKTDLRDNYPFNMFAVPRE+LVRVHASSGTTGKPIVVGYT+ DI Sbjct: 80 PSDFRELSDLAKFPFTVKTDLRDNYPFNMFAVPREKLVRVHASSGTTGKPIVVGYTQRDI 139 Query: 121 DTWADVMARSIRAAGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQV 180 DTW++VMARSIRAAGGRTGM++HNAYGYGLFTGGLG HYGAE+LGCTV+PISGGMTERQV Sbjct: 140 DTWSEVMARSIRAAGGRTGMIIHNAYGYGLFTGGLGVHYGAEKLGCTVVPISGGMTERQV 199 Query: 181 QLVNDFRPDIITVTPSYMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFD 240 QL+NDFRPDIITVTPSYMLAILDEFKRQ LDPR+ SLK GIFGAEPWTNAMR EIE AFD Sbjct: 200 QLINDFRPDIITVTPSYMLAILDEFKRQKLDPRQCSLKVGIFGAEPWTNAMRGEIEDAFD 259 Query: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTS 300 MDATDIYGLSEVIGPGVAQEC+ETKDGLHIWEDHFYPEVIDP TG VLPDGEKGELVFTS Sbjct: 260 MDATDIYGLSEVIGPGVAQECIETKDGLHIWEDHFYPEVIDPETGAVLPDGEKGELVFTS 319 Query: 301 LTKEAFPIIRYRTRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLA 360 LTKE FP+IRYRTRDLTRLLPG+ARPGMRRMEKVTGRSDDMIILRGVN+FPTQIEE LLA Sbjct: 320 LTKEGFPVIRYRTRDLTRLLPGTARPGMRRMEKVTGRSDDMIILRGVNLFPTQIEEVLLA 379 Query: 361 TDWCGGHFVIELTREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRV 420 TDWCGGHF++ELTREGRMDE+T++AEARPESWDG GLV HA+++S IKNTIGIS+ VRV Sbjct: 380 TDWCGGHFILELTREGRMDELTIIAEARPESWDGRGLVDHADRISTHIKNTIGISSNVRV 439 Query: 421 VAPETLERSLGKAKRVYDKRPK 442 VAP TLERSLGKA+R+YDKRPK Sbjct: 440 VAPATLERSLGKARRLYDKRPK 461 >ref|YP_001990921.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris TIE-1] gb|ACF00446.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris TIE-1] Length = 443 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/442 (85%), Positives = 413/442 (93%) Query: 1 MATAKLKVKDSGYHAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVH 60 MA ++K Y+ ELD AERASRDEI+ALQT+RLAWSLKHAYDNVAHY+ AFD GVH Sbjct: 1 MAATVHQIKPGTYNPELDDAERASRDEIVALQTKRLAWSLKHAYDNVAHYKAAFDRKGVH 60 Query: 61 PSDFRQLPDLAKFPFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADI 120 PS+FRQL DL+KFPFTVKTDLRDNYPF MFAVPRE LVRVHASSGTTGKPIVVGYT+ DI Sbjct: 61 PSNFRQLSDLSKFPFTVKTDLRDNYPFAMFAVPRENLVRVHASSGTTGKPIVVGYTQKDI 120 Query: 121 DTWADVMARSIRAAGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQV 180 +TWA VMARS+RAAG R GM++HN+YGYGLFTGGLGAHYG E+LGCTV+P+SGGMTERQV Sbjct: 121 ETWATVMARSLRAAGARRGMIIHNSYGYGLFTGGLGAHYGGEKLGCTVVPVSGGMTERQV 180 Query: 181 QLVNDFRPDIITVTPSYMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFD 240 QL+NDFRPDIITVTPSYMLAILDEFKRQGLDPR+SSLK+G+FGAEPWTNAMR EIEQAFD Sbjct: 181 QLINDFRPDIITVTPSYMLAILDEFKRQGLDPRQSSLKYGVFGAEPWTNAMRAEIEQAFD 240 Query: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTS 300 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDP TG VLPDGEKGELVFTS Sbjct: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPETGDVLPDGEKGELVFTS 300 Query: 301 LTKEAFPIIRYRTRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLA 360 LTKEAFP+IRYRTRDLTRLLPG+ARPGMRRMEK+TGRSDDMIILRGVNVFPTQIEE LL Sbjct: 301 LTKEAFPVIRYRTRDLTRLLPGTARPGMRRMEKITGRSDDMIILRGVNVFPTQIEEVLLG 360 Query: 361 TDWCGGHFVIELTREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRV 420 TDWCGGHF+IELTREGRMDEMTVLAEARPESWDG GLV HAE+V+A+IKNTIGIST ++V Sbjct: 361 TDWCGGHFIIELTREGRMDEMTVLAEARPESWDGAGLVPHAERVAAYIKNTIGISTTIKV 420 Query: 421 VAPETLERSLGKAKRVYDKRPK 442 V P+TLERSLGKA+RV+DKRPK Sbjct: 421 VPPDTLERSLGKARRVFDKRPK 442 >ref|NP_947069.1| phenylacetyl-CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE27164.1| phenylacetyl-CoA ligase [Rhodopseudomonas palustris CGA009] Length = 443 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/442 (86%), Positives = 411/442 (92%) Query: 1 MATAKLKVKDSGYHAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVH 60 MA ++K Y+ ELD AERASRDEI+ALQT+RLAWSLKHAYDNVAHY+ AFD GVH Sbjct: 1 MAATVHQIKPGTYNPELDDAERASRDEIVALQTKRLAWSLKHAYDNVAHYKAAFDRKGVH 60 Query: 61 PSDFRQLPDLAKFPFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADI 120 PSDFRQL DL+KFPFTVKTDLRDNYPF MFAVPRE LVRVHASSGTTGKPIVVGYT DI Sbjct: 61 PSDFRQLSDLSKFPFTVKTDLRDNYPFAMFAVPRESLVRVHASSGTTGKPIVVGYTPKDI 120 Query: 121 DTWADVMARSIRAAGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQV 180 DTWA VMARS+RAAG R GM++HN+YGYGLFTGGLGAHYG E+LGCTV+P+SGGMTERQV Sbjct: 121 DTWATVMARSLRAAGARRGMIIHNSYGYGLFTGGLGAHYGGEKLGCTVVPVSGGMTERQV 180 Query: 181 QLVNDFRPDIITVTPSYMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFD 240 QL+NDFRPDIITVTPSYMLAILDEFKRQGLDPR+SSLK+G+FGAEPWTNAMR EIEQAFD Sbjct: 181 QLINDFRPDIITVTPSYMLAILDEFKRQGLDPRQSSLKYGVFGAEPWTNAMRAEIEQAFD 240 Query: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTS 300 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDP TG VLPDGEKGELVFTS Sbjct: 241 MDATDIYGLSEVIGPGVAQECVETKDGLHIWEDHFYPEVIDPDTGDVLPDGEKGELVFTS 300 Query: 301 LTKEAFPIIRYRTRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLA 360 LTKEAFP+IRYRTRDLTRLLPG+ARPGMRRMEK+TGRSDDMIILRGVNVFPTQIEE LL Sbjct: 301 LTKEAFPVIRYRTRDLTRLLPGTARPGMRRMEKITGRSDDMIILRGVNVFPTQIEEVLLG 360 Query: 361 TDWCGGHFVIELTREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRV 420 TDWCGGHF+IELTREGRMDEMTVLAEARPESWDG GLV HAE+ +A+IKNTIGIST ++V Sbjct: 361 TDWCGGHFIIELTREGRMDEMTVLAEARPESWDGAGLVPHAERAAAYIKNTIGISTTIKV 420 Query: 421 VAPETLERSLGKAKRVYDKRPK 442 V P+TLERSLGKA+RV+DKRPK Sbjct: 421 VPPDTLERSLGKARRVFDKRPK 442 >ref|YP_568966.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris BisB5] gb|ABE39065.1| phenylacetate-CoA ligase [Rhodopseudomonas palustris BisB5] Length = 444 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/432 (87%), Positives = 404/432 (93%) Query: 11 SGYHAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDL 70 +GY AELD ERASRDEI+ALQTRRL W+LKHAYDNVAHY+ AFD G+HPSDFR+L DL Sbjct: 12 AGYSAELDETERASRDEIVALQTRRLGWTLKHAYDNVAHYKTAFDRVGLHPSDFRELADL 71 Query: 71 AKFPFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARS 130 AKFPFT K DLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYT DIDTWA VMARS Sbjct: 72 AKFPFTQKNDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTANDIDTWATVMARS 131 Query: 131 IRAAGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDI 190 +RAAG R GM++HNAYGYGLFTGGLGAHYG E+LGCTV+P+SGGMTERQVQL+NDFRPDI Sbjct: 132 LRAAGARRGMILHNAYGYGLFTGGLGAHYGGEKLGCTVVPVSGGMTERQVQLINDFRPDI 191 Query: 191 ITVTPSYMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLS 250 ITVTPSYMLAILDEFKRQGLDPRKSSLK+G+FGAEPWTNAMR EIEQAFDMDATDIYGLS Sbjct: 192 ITVTPSYMLAILDEFKRQGLDPRKSSLKYGVFGAEPWTNAMRAEIEQAFDMDATDIYGLS 251 Query: 251 EVIGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIR 310 EV+GPGVAQECVETKDGLHIWEDHF PEVIDP TG VLPDGE GELVFTSLTKEAFP+IR Sbjct: 252 EVMGPGVAQECVETKDGLHIWEDHFLPEVIDPATGAVLPDGETGELVFTSLTKEAFPVIR 311 Query: 311 YRTRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVI 370 YRTRDLTRLLPGSARPGMRRMEK+TGRSDDMIILRGVNVFPTQIEE LL TDWCGGHF+I Sbjct: 312 YRTRDLTRLLPGSARPGMRRMEKITGRSDDMIILRGVNVFPTQIEEVLLGTDWCGGHFII 371 Query: 371 ELTREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRVVAPETLERSL 430 ELTR+GRMDEMTVLAEARPESWDG GLV HAE+V+ +IKNTIGIST ++VV P+TLERSL Sbjct: 372 ELTRQGRMDEMTVLAEARPESWDGAGLVPHAERVATYIKNTIGISTTIKVVPPDTLERSL 431 Query: 431 GKAKRVYDKRPK 442 GKAKRVYDKRPK Sbjct: 432 GKAKRVYDKRPK 443