BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0243.0032.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773278.1| hypothetical protein blr6638 [Bradyrhizobium ja...   164   4e-39
ref|ZP_08072757.1| Excinuclease ABC C subunit domain protein [Me...   129   1e-28
ref|YP_002502705.1| Excinuclease ABC subunit C domain-containing...   116   1e-24
ref|YP_530270.1| excinuclease ABC subunit C [Rhodopseudomonas pa...   114   3e-24
ref|YP_003694209.1| excinuclease ABC C subunit domain-containing...   114   6e-24

>ref|NP_773278.1| hypothetical protein blr6638 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51903.1| blr6638 [Bradyrhizobium japonicum USDA 110]
          Length = 112

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 85/103 (82%)

Query: 4   MAEGAFLYILRCADGSFYIGITRTALEIRIAQHNSGVLGGYTVTRRPVTLVFSQWFDRIT 63
           M EG +LYILRC DGS+YIG TRT LEIRIAQHN+G   GYT +RRPVTLVFSQWFDR+T
Sbjct: 1   MTEGVWLYILRCTDGSYYIGTTRTELEIRIAQHNTGAFAGYTKSRRPVTLVFSQWFDRVT 60

Query: 64  DAIENERKLKKWSRAKKEAFVRGDFAALRHLAARRSPYPSTPP 106
           DAIE ERKLKKWSRAKKEAF+RGDFA L  LA R S +PS  P
Sbjct: 61  DAIECERKLKKWSRAKKEAFMRGDFAELHELAKRGSHHPSRRP 103


>ref|ZP_08072757.1| Excinuclease ABC C subunit domain protein [Methylocystis sp. ATCC
           49242]
 gb|EFX99503.1| Excinuclease ABC C subunit domain protein [Methylocystis sp. ATCC
           49242]
          Length = 105

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 78/104 (75%)

Query: 4   MAEGAFLYILRCADGSFYIGITRTALEIRIAQHNSGVLGGYTVTRRPVTLVFSQWFDRIT 63
           MAEGA +YIL CADGS+Y G+TR  +E R+ +HN+GV   YT  RRPVTLV+S +++R+T
Sbjct: 1   MAEGASIYILLCADGSYYTGLTRKEVETRVGEHNAGVNADYTSRRRPVTLVWSAYYERLT 60

Query: 64  DAIENERKLKKWSRAKKEAFVRGDFAALRHLAARRSPYPSTPPG 107
           DAI  ER++K WSRAKKEA ++GD+ AL  LAARR+     P G
Sbjct: 61  DAIAAERQIKGWSRAKKEALIKGDYDALPALAARRNRKSGAPSG 104


>ref|YP_002502705.1| Excinuclease ABC subunit C domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gb|ACL62402.1| Excinuclease ABC C subunit domain protein [Methylobacterium
          nodulans ORS 2060]
          Length = 104

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 8  AFLYILRCADGSFYIGITR-TALEIRIAQHNSGVLGGYTVTRRPVTLVFSQWFDRITDAI 66
          AF+YILRC+DGSFY+G  R   L+ R+ +H SG   GYT  RRPVTLV+++ FDRITDAI
Sbjct: 3  AFVYILRCSDGSFYVGSARGQTLDKRMGEHQSGAFLGYTHARRPVTLVYAEQFDRITDAI 62

Query: 67 ENERKLKKWSRAKKEAFVRGDFAALRHLAAR 97
          E ER++K WSRAKKEA +RGD+  ++ LA R
Sbjct: 63 EAERRIKGWSRAKKEALIRGDWKTVQRLAQR 93


>ref|YP_530270.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18]
 gb|ABD85951.1| Excinuclease ABC, C subunit-like [Rhodopseudomonas palustris
          BisB18]
          Length = 104

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 7  GAFLYILRCADGSFYIG-ITRTALEIRIAQHNSGVLGGYTVTRRPVTLVFSQWFDRITDA 65
          G F+Y+LRCADGS+Y+G  T   L  R+AQH++G   GYT TRRPVTLV+S+ FDRITDA
Sbjct: 2  GIFVYMLRCADGSYYVGSATGDDLAPRVAQHDAGSYPGYTSTRRPVTLVWSEHFDRITDA 61

Query: 66 IENERKLKKWSRAKKEAFVRGDFAALRHLAARR 98
          I  ER++K WSRAKKEA +RGD+  +  LA RR
Sbjct: 62 IAVERQIKGWSRAKKEALIRGDWGDISRLARRR 94


>ref|YP_003694209.1| excinuclease ABC C subunit domain-containing protein [Starkeya
          novella DSM 506]
 gb|ADH89590.1| Excinuclease ABC C subunit domain protein [Starkeya novella DSM
          506]
          Length = 97

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 7  GAFLYILRCADGSFYIGITRTALEIRIAQHNSGVLGGYTVTRRPVTLVFSQWFDRITDAI 66
          GAF+Y+LRCADGS+Y+G TR  LE R+ +H SG   GYT  RRPVTL++S+ F  ITDAI
Sbjct: 2  GAFVYMLRCADGSYYVGSTRGTLEQRLVEHQSGAFPGYTFRRRPVTLIWSEHFSGITDAI 61

Query: 67 ENERKLKKWSRAKKEAFVRGDFAALRHLAARRS 99
            ER++K WSRAKKEA  RGD+  +R  A R S
Sbjct: 62 AAERQIKGWSRAKKEALARGDWELIRAAARRPS 94