BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0012.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769560.1| transcriptional regulator [Bradyrhizobium japon... 530 e-148 ref|YP_001238915.1| LysR family transcriptional regulator [Brady... 482 e-134 ref|YP_001204594.1| LysR family transcriptional regulator [Brady... 478 e-133 ref|YP_004110083.1| LysR family transcriptional regulator [Rhodo... 477 e-132 ref|NP_947091.1| LysR family transcriptional regulator [Rhodopse... 476 e-132 >ref|NP_769560.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48185.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 259/305 (84%), Positives = 280/305 (91%) Query: 1 MTDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 M DFRSIETFLWVVKLGSFRGAA RLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP Sbjct: 1 MLDFRSIETFLWVVKLGSFRGAAARLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 Query: 61 SGRLMMIYAEKLIGLRSEMMAEVGDRSAMRGALRLGVAETIVHTWLPRLVKSVNEVYPNL 120 SGR MM+YAEKLIGLR++MMAE+GDRSAMRG +RLGVAETIVHTWLPRLVKSVN++YPNL Sbjct: 61 SGRQMMVYAEKLIGLRAQMMAEIGDRSAMRGVMRLGVAETIVHTWLPRLVKSVNQIYPNL 120 Query: 121 SLEIEVDITPNLTQRLLAQEIELAFVLGPVSASGAHNHVLCDYPIGFLASPALGLGDGPV 180 SLEIEVDITPNLT RLLAQEIELAFV+GP+SASG HN VL DYPIGFLASP+LGLG GPV Sbjct: 121 SLEIEVDITPNLTARLLAQEIELAFVVGPLSASGVHNRVLADYPIGFLASPSLGLGKGPV 180 Query: 181 ARQDLARFPIITFPRKTQPYETVRALFNAPDLPPIRLHASTSLATVIHMANEGLGIAVIP 240 +LARFPIITFPRKT+PYE VR +F+ P+LPPIRLHAS SLATVIHMA EGLGIAVIP Sbjct: 181 TPAELARFPIITFPRKTKPYEVVREVFDRPELPPIRLHASASLATVIHMAVEGLGIAVIP 240 Query: 241 AAIVENELADGRLQLLDTDLKLPPLTFTASWLASPDAVAIERVANLARQIAQASVAVDGA 300 AIVENELADGRLQLLDTDL++ PLTFTASWLASPD VA+ERVA LA QIAQ+S+AVD Sbjct: 241 DAIVENELADGRLQLLDTDLEITPLTFTASWLASPDVVAVERVAELACQIAQSSLAVDAP 300 Query: 301 RVARH 305 +ARH Sbjct: 301 ALARH 305 >ref|YP_001238915.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35009.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 320 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 240/308 (77%), Positives = 263/308 (85%), Gaps = 4/308 (1%) Query: 1 MTDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 M DFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLERE+GVKLLNRDHRVASPT Sbjct: 1 MLDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTA 60 Query: 61 SGRLMMIYAEKLIGLRSEMMAEVGDRSAMRGALRLGVAETIVHTWLPRLVKSVNEVYPNL 120 SGR M++YAEKLIGLR+EM+AEVGDRSAMRG LRLGVAETIVH WLPRL+KSVNE YPNL Sbjct: 61 SGRQMLVYAEKLIGLRAEMLAEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNESYPNL 120 Query: 121 SLEIEVDITPNLTQRLLAQEIELAFVLGPVSASGAHNHVLCDYPIGFLASPALGLGDGPV 180 SLEIEVD+TPNL RLLAQEIELAF LG S SG + VLCDYPI FLASPALG G G V Sbjct: 121 SLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVLCDYPISFLASPALGFGKGLV 180 Query: 181 ARQDLARFPIITFPRKTQPYETVRALFNAPDLPPIRLHASTSLATVIHMANEGLGIAVIP 240 + +ARFPIITFPR TQPY+ VR+LFN P LPP+RLHAS SLATVIHMA EGLG+AVIP Sbjct: 181 TAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAIEGLGVAVIP 240 Query: 241 AAIVENELADGRLQLLDTDLKLPPLTFTASWLASPDAVAIERVANLARQIAQA----SVA 296 AAIV NE+ GRLQ L+TDL++PPLTFTASWL+SP+ VAIERVA LA + AQ + + Sbjct: 241 AAIVANEIESGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPAAS 300 Query: 297 VDGARVAR 304 VDG AR Sbjct: 301 VDGIVAAR 308 >ref|YP_001204594.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76357.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS 278] Length = 320 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/308 (76%), Positives = 263/308 (85%), Gaps = 4/308 (1%) Query: 1 MTDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 M DFRSIETFLWV KLGSFRGAAQRLNTTQPAISQRIAQLERE+GVKLLNRDHRVASPT Sbjct: 1 MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTA 60 Query: 61 SGRLMMIYAEKLIGLRSEMMAEVGDRSAMRGALRLGVAETIVHTWLPRLVKSVNEVYPNL 120 GR M++YAEKLIGLR+EM+AEVGDRSAMRG LRLGVAETIVH WLPRL+KSVN+ YPNL Sbjct: 61 VGRQMLVYAEKLIGLRAEMLAEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNL 120 Query: 121 SLEIEVDITPNLTQRLLAQEIELAFVLGPVSASGAHNHVLCDYPIGFLASPALGLGDGPV 180 SLEIEVD+TPNL RLLAQEIELAF LG S SG + VLCDYPI FLASPALG G+G V Sbjct: 121 SLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVLCDYPISFLASPALGFGEGIV 180 Query: 181 ARQDLARFPIITFPRKTQPYETVRALFNAPDLPPIRLHASTSLATVIHMANEGLGIAVIP 240 + +ARFPIITFPR TQPY+ VR+LFN P LPP+RLHAS SLATVIHMA EGLG+AVIP Sbjct: 181 TAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP 240 Query: 241 AAIVENELADGRLQLLDTDLKLPPLTFTASWLASPDAVAIERVANLARQIAQA----SVA 296 AAIV NE+ +GRLQ L+TDL++PPLTFTASWL+SP+ VAIERVA LA + AQ + + Sbjct: 241 AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATS 300 Query: 297 VDGARVAR 304 VD A AR Sbjct: 301 VDAAVAAR 308 >ref|YP_004110083.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU45350.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 316 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/292 (78%), Positives = 258/292 (88%) Query: 1 MTDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 M DF+++ETF+WVV LGSFRGAAQ+LNTTQPAISQRIAQLERE+GV+LL RDHRVASPTP Sbjct: 1 MVDFKALETFIWVVTLGSFRGAAQKLNTTQPAISQRIAQLERELGVRLLQRDHRVASPTP 60 Query: 61 SGRLMMIYAEKLIGLRSEMMAEVGDRSAMRGALRLGVAETIVHTWLPRLVKSVNEVYPNL 120 SGR +M+YAEKLI LR+EMMA V D+S+MRG LRLGVAETIVHTWLPRL++ VN VYPNL Sbjct: 61 SGRQLMLYAEKLIRLRTEMMAAVSDQSSMRGVLRLGVAETIVHTWLPRLIEQVNRVYPNL 120 Query: 121 SLEIEVDITPNLTQRLLAQEIELAFVLGPVSASGAHNHVLCDYPIGFLASPALGLGDGPV 180 SLEIEVDITPNL RLLAQEIELAF+LGP++AS + VLC+YPIGFLASP+LGLGDGP+ Sbjct: 121 SLEIEVDITPNLRARLLAQEIELAFLLGPMTASTVRSRVLCEYPIGFLASPSLGLGDGPL 180 Query: 181 ARQDLARFPIITFPRKTQPYETVRALFNAPDLPPIRLHASTSLATVIHMANEGLGIAVIP 240 DLA+FPIITFPRKTQPYE VR+LFN P+LPPIRLHAS SL TVIHMA EGLGIAVIP Sbjct: 181 TVADLAKFPIITFPRKTQPYEIVRSLFNKPELPPIRLHASASLGTVIHMAIEGLGIAVIP 240 Query: 241 AAIVENELADGRLQLLDTDLKLPPLTFTASWLASPDAVAIERVANLARQIAQ 292 AIVENEL +GRL LL TDLK+ PL F+ASWLASPD VAIERVA LA +IA Sbjct: 241 TAIVENELTEGRLHLLQTDLKISPLRFSASWLASPDTVAIERVAELAAEIAH 292 >ref|NP_947091.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] ref|YP_001990944.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE27187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] gb|ACF00469.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 316 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/292 (78%), Positives = 259/292 (88%) Query: 1 MTDFRSIETFLWVVKLGSFRGAAQRLNTTQPAISQRIAQLEREMGVKLLNRDHRVASPTP 60 M DF+++ETF+WVV LGSFRGAA +LNTTQPAISQRIAQLERE+GV+LL RDHRVASPTP Sbjct: 1 MVDFKALETFIWVVTLGSFRGAAHKLNTTQPAISQRIAQLERELGVRLLQRDHRVASPTP 60 Query: 61 SGRLMMIYAEKLIGLRSEMMAEVGDRSAMRGALRLGVAETIVHTWLPRLVKSVNEVYPNL 120 SGR +M+YAEKLI LR+EMMA V D+S+MRG LRLGVAETIVHTWLPRL++ VN VYPNL Sbjct: 61 SGRQLMLYAEKLIRLRTEMMAAVSDQSSMRGVLRLGVAETIVHTWLPRLIEQVNRVYPNL 120 Query: 121 SLEIEVDITPNLTQRLLAQEIELAFVLGPVSASGAHNHVLCDYPIGFLASPALGLGDGPV 180 SLEIEVDITPNL RLLAQEIELAF+LGP++AS + VLC+YPIGFLASP+LGLG+GP+ Sbjct: 121 SLEIEVDITPNLRARLLAQEIELAFLLGPMTASTVRSRVLCEYPIGFLASPSLGLGNGPL 180 Query: 181 ARQDLARFPIITFPRKTQPYETVRALFNAPDLPPIRLHASTSLATVIHMANEGLGIAVIP 240 DLA+FPIITFPRKTQPYE VR+LFN P+LPPIRLHAS SL TVIHMA EGLGIAVIP Sbjct: 181 TVADLAKFPIITFPRKTQPYEIVRSLFNKPELPPIRLHASASLGTVIHMAIEGLGIAVIP 240 Query: 241 AAIVENELADGRLQLLDTDLKLPPLTFTASWLASPDAVAIERVANLARQIAQ 292 AIVENELA+GRLQLL TDLK+ PL F+ASWLASPD VAIERVA LA +IA Sbjct: 241 TAIVENELAEGRLQLLQTDLKISPLRFSASWLASPDTVAIERVAELAAEIAH 292