BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0009.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769563.1| amino acid ABC transporter permease protein [Br... 503 e-140 ref|YP_001204597.1| putative ABC transporter permease [Bradyrhiz... 480 e-133 ref|YP_780623.1| inner-membrane translocator [Rhodopseudomonas p... 474 e-132 ref|NP_947094.1| inner-membrane translocator [Rhodopseudomonas p... 473 e-131 ref|YP_568985.1| inner-membrane translocator [Rhodopseudomonas p... 472 e-131 >ref|NP_769563.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48188.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 301 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/292 (92%), Positives = 283/292 (96%) Query: 1 VTAETIIQSLASGLLMGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAFFA 60 +TA+ IIQSLASGLLMGLLYGLIA GLALIFGLMDVVNFAHGEFLMIAMY +FFLFAFFA Sbjct: 10 LTAQAIIQSLASGLLMGLLYGLIAVGLALIFGLMDVVNFAHGEFLMIAMYVSFFLFAFFA 69 Query: 61 IDPLLSAPLVAAALFVFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFT 120 IDPLLSAPLVAAALFVFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFT Sbjct: 70 IDPLLSAPLVAAALFVFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFT 129 Query: 121 PDYRSVTNSWVGGKTVSIAGIYLPEPQLIGAMLSIAAFVALYFFINRTDFGRALEATRED 180 PDYRS+ SW+GGKT+SI GI+LPEPQLIGA++SIAAF LYFFINRTDFGRALEATRED Sbjct: 130 PDYRSIPQSWLGGKTISIGGIFLPEPQLIGALVSIAAFAGLYFFINRTDFGRALEATRED 189 Query: 181 AGAVALVGIDKNRVFALGWGLGAALVGLAGAIMAIFFYVYPDVGASFALIAYVTVALGGF 240 GAVALVGIDKNRVFALGWGLGAALVGLAGAIMA+FFY+YPDVGASFALIAYVTVALGGF Sbjct: 190 PGAVALVGIDKNRVFALGWGLGAALVGLAGAIMAVFFYIYPDVGASFALIAYVTVALGGF 249 Query: 241 GSVFGAFAGGIIVGLVEATTALILPPSLKSVGIYAVYLLVVFIRPRGLFGSM 292 GSVFGAFAGGIIVGLVEATTAL+LPPSLKSVGIYAVYLLVVFIRPRGLFGSM Sbjct: 250 GSVFGAFAGGIIVGLVEATTALVLPPSLKSVGIYAVYLLVVFIRPRGLFGSM 301 >ref|YP_001204597.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL76360.1| putative ABC transporter permiase component [Bradyrhizobium sp. ORS 278] Length = 277 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 243/277 (87%), Positives = 267/277 (96%) Query: 16 MGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAFFAIDPLLSAPLVAAALF 75 MGLLYGLIA GLALIFGLMDVVNFAHGEFLMIAMYATFFLFA+FA+DPLLSAP+VAA LF Sbjct: 1 MGLLYGLIAVGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAYFALDPLLSAPIVAAGLF 60 Query: 76 VFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFTPDYRSVTNSWVGGKT 135 VFGAVVYLLIVRFA+RAKAN GMVQIFSTFGLA++MRG+AQ+FFTPDYRS+ +SW+GGKT Sbjct: 61 VFGAVVYLLIVRFAVRAKANTGMVQIFSTFGLAVLMRGVAQYFFTPDYRSIPHSWLGGKT 120 Query: 136 VSIAGIYLPEPQLIGAMLSIAAFVALYFFINRTDFGRALEATREDAGAVALVGIDKNRVF 195 +SIAGIYLP+PQL+GA+++IAAF LYFFI+RTDFGRALEATREDAGAVALVGIDKN+VF Sbjct: 121 ISIAGIYLPQPQLVGALIAIAAFAGLYFFIHRTDFGRALEATREDAGAVALVGIDKNKVF 180 Query: 196 ALGWGLGAALVGLAGAIMAIFFYVYPDVGASFALIAYVTVALGGFGSVFGAFAGGIIVGL 255 ALGWGLGAALVGLAGA+MAIFFYV+PDVGASFA IAYVTVALGGFGSVFGAFAGGI+VGL Sbjct: 181 ALGWGLGAALVGLAGAVMAIFFYVFPDVGASFATIAYVTVALGGFGSVFGAFAGGIVVGL 240 Query: 256 VEATTALILPPSLKSVGIYAVYLLVVFIRPRGLFGSM 292 VEA T LILP SLK+VGIYAVYLLVVFIRPRGLFGS+ Sbjct: 241 VEAITTLILPASLKTVGIYAVYLLVVFIRPRGLFGSI 277 >ref|YP_780623.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] gb|ABJ05643.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] Length = 292 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 255/292 (87%), Positives = 275/292 (94%) Query: 1 VTAETIIQSLASGLLMGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAFFA 60 +T TIIQSLASGLLMGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMY TFFLFAFFA Sbjct: 1 MTTATIIQSLASGLLMGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYVTFFLFAFFA 60 Query: 61 IDPLLSAPLVAAALFVFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFT 120 IDPLL+ PLVAAALFVFGAVVYLL+VRFAMRAK N GMVQIF+TFGLAI MRGLAQ+FFT Sbjct: 61 IDPLLAMPLVAAALFVFGAVVYLLVVRFAMRAKTNVGMVQIFATFGLAIAMRGLAQYFFT 120 Query: 121 PDYRSVTNSWVGGKTVSIAGIYLPEPQLIGAMLSIAAFVALYFFINRTDFGRALEATRED 180 PDYRS+ SW+GG+T+S+ G++LP PQL+GA +SI AF AL+ FI +TDFGRALEATRED Sbjct: 121 PDYRSINASWLGGQTISLGGVFLPVPQLVGAGVSILAFTALFVFIKKTDFGRALEATRED 180 Query: 181 AGAVALVGIDKNRVFALGWGLGAALVGLAGAIMAIFFYVYPDVGASFALIAYVTVALGGF 240 AGAVALVGIDKNRVFALGWGLGAALVGLAGAIMA FFY+YPDVGASFALIAYVTVALGGF Sbjct: 181 AGAVALVGIDKNRVFALGWGLGAALVGLAGAIMATFFYIYPDVGASFALIAYVTVALGGF 240 Query: 241 GSVFGAFAGGIIVGLVEATTALILPPSLKSVGIYAVYLLVVFIRPRGLFGSM 292 GSVFGAFAGGIIVGLVEATTALILPPSLK+VGIYAVYLLVVF+RPRGLFGS+ Sbjct: 241 GSVFGAFAGGIIVGLVEATTALILPPSLKAVGIYAVYLLVVFVRPRGLFGSI 292 >ref|NP_947094.1| inner-membrane translocator [Rhodopseudomonas palustris CGA009] emb|CAE27190.1| putative branched-chain amino acid transport system permease protein [Rhodopseudomonas palustris CGA009] Length = 277 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 236/277 (85%), Positives = 265/277 (95%) Query: 16 MGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAFFAIDPLLSAPLVAAALF 75 MGLLYGL+A GLALIFGLMDV NFAHGEFLM+AMY TFFLFAFFAIDP+L+APLV AA+F Sbjct: 1 MGLLYGLVAVGLALIFGLMDVTNFAHGEFLMLAMYITFFLFAFFAIDPILAAPLVGAAMF 60 Query: 76 VFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFTPDYRSVTNSWVGGKT 135 VFGAV+YLL+VRFAMRA+AN GMVQIF+TFGLAI+MRGLAQ+FFTPDYRS+ SW+GGKT Sbjct: 61 VFGAVIYLLVVRFAMRARANIGMVQIFTTFGLAILMRGLAQYFFTPDYRSINVSWLGGKT 120 Query: 136 VSIAGIYLPEPQLIGAMLSIAAFVALYFFINRTDFGRALEATREDAGAVALVGIDKNRVF 195 + I G++LP PQL+GA++SIAAF ALYFF+ +TDFGRALEATREDAGAVALVGIDKN+VF Sbjct: 121 LEIGGVFLPVPQLVGALVSIAAFGALYFFMKKTDFGRALEATREDAGAVALVGIDKNKVF 180 Query: 196 ALGWGLGAALVGLAGAIMAIFFYVYPDVGASFALIAYVTVALGGFGSVFGAFAGGIIVGL 255 ALGWGLG+AL+GLAGA+MAIFFY+YPDVGASFALIAYVTVALGGFGSVFGAFAGGIIVGL Sbjct: 181 ALGWGLGSALIGLAGAVMAIFFYIYPDVGASFALIAYVTVALGGFGSVFGAFAGGIIVGL 240 Query: 256 VEATTALILPPSLKSVGIYAVYLLVVFIRPRGLFGSM 292 VEATTA+ILPPSLKS+GIYAVYLLVVFIRPRGLFGS+ Sbjct: 241 VEATTAMILPPSLKSIGIYAVYLLVVFIRPRGLFGSI 277 >ref|YP_568985.1| inner-membrane translocator [Rhodopseudomonas palustris BisB5] gb|ABE39084.1| inner-membrane translocator [Rhodopseudomonas palustris BisB5] Length = 292 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 251/292 (85%), Positives = 275/292 (94%) Query: 1 VTAETIIQSLASGLLMGLLYGLIAAGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAFFA 60 +T TIIQSLASGLLMGLLYGL+A GLALIFGLMD+ NFAHGEFLM+AMY TFFLFAFFA Sbjct: 1 MTTATIIQSLASGLLMGLLYGLVAVGLALIFGLMDITNFAHGEFLMLAMYVTFFLFAFFA 60 Query: 61 IDPLLSAPLVAAALFVFGAVVYLLIVRFAMRAKANAGMVQIFSTFGLAIVMRGLAQFFFT 120 IDPLLSAPLV AA+F+FGAV YLL+VRFAMRAK+N GMVQIF+TFGLAI+MRGLAQ+FFT Sbjct: 61 IDPLLSAPLVGAAMFLFGAVAYLLVVRFAMRAKSNIGMVQIFTTFGLAILMRGLAQYFFT 120 Query: 121 PDYRSVTNSWVGGKTVSIAGIYLPEPQLIGAMLSIAAFVALYFFINRTDFGRALEATRED 180 PDYRS+ SW+GGKTVS GI+LP PQL+GA++S+AAF ALYFFI +TDFGRALEATRED Sbjct: 121 PDYRSINVSWLGGKTVSFGGIFLPVPQLVGALVSLAAFGALYFFIKKTDFGRALEATRED 180 Query: 181 AGAVALVGIDKNRVFALGWGLGAALVGLAGAIMAIFFYVYPDVGASFALIAYVTVALGGF 240 AGAVALVGIDKN+VFALGWGLG ALVGLAGA+MA FFY+YPDVGASFALIAYVTVALGGF Sbjct: 181 AGAVALVGIDKNKVFALGWGLGGALVGLAGAVMATFFYIYPDVGASFALIAYVTVALGGF 240 Query: 241 GSVFGAFAGGIIVGLVEATTALILPPSLKSVGIYAVYLLVVFIRPRGLFGSM 292 GSVFGAFAGGIIVGLVEATTAL+LPPSLKSVGIYAVYLLVVFIRPRGLFGS+ Sbjct: 241 GSVFGAFAGGIIVGLVEATTALMLPPSLKSVGIYAVYLLVVFIRPRGLFGSI 292