BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0008.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531543.1| inner-membrane translocator [Rhodopseudomonas p... 568 e-160 ref|YP_001238919.1| putative ABC transporter permease [Bradyrhiz... 565 e-159 ref|YP_780624.1| inner-membrane translocator [Rhodopseudomonas p... 561 e-158 ref|YP_487224.1| inner-membrane translocator [Rhodopseudomonas p... 559 e-157 ref|YP_001204598.1| putative ABC transporter permease [Bradyrhiz... 558 e-157 >ref|YP_531543.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] gb|ABD87224.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] Length = 326 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/326 (87%), Positives = 299/326 (91%), Gaps = 1/326 (0%) Query: 1 MDTQFAQRRRRDLIVAACLAVIAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 MD FAQRRRRDL++AA +AALVPLFVKDVYVQNIMVLTLMYAALSQSWNIL GYCG Sbjct: 1 MDNSFAQRRRRDLLLAAGFTAVAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILGGYCG 60 Query: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLAGGAISALIAMALGYPCFRLRGHYFVI 120 QISLGHALYFGLGAYTTALLFTKFGVLPWFGM++GG ISA+IAMALGYPCFRLRGHYFVI Sbjct: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMISGGLISAVIAMALGYPCFRLRGHYFVI 120 Query: 121 ATIVIAEIALLLIQNWDWAGAALGIDIPVRGDSWLKFQFTRSKLPYFYFALALACIAWFV 180 ATIVIAEIA LL NWDWAGAALGIDIPVR DSW FQFTRSKLPYFYFAL +AW V Sbjct: 121 ATIVIAEIAYLLFLNWDWAGAALGIDIPVRKDSWTTFQFTRSKLPYFYFALGFCVVAWLV 180 Query: 181 TWWLEDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLVAVGGSFYAQFVSYID 240 T+WL+DSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFL AVGGSFYAQFVSYID Sbjct: 181 TFWLQDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLTAVGGSFYAQFVSYID 240 Query: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 PESVM F FSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT Sbjct: 241 PESVMSFHFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 Query: 301 LIVVISLALPRGLVSVFSL-RKGAAR 325 LIV+I+LA P GL+ +FS RKGA+R Sbjct: 301 LIVLIALARPEGLIGLFSRKRKGASR 326 >ref|YP_001238919.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35013.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 334 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/324 (90%), Positives = 303/324 (93%) Query: 1 MDTQFAQRRRRDLIVAACLAVIAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 MD F QRRRRDL+VAA LA IAA VPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG Sbjct: 1 MDKAFIQRRRRDLVVAAFLAAIAAAVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 Query: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLAGGAISALIAMALGYPCFRLRGHYFVI 120 QISLGHALYFGLGAYTTA+LFTKFGVLPWFGMLAGG ISALIAMALGYPCFRL GHYFVI Sbjct: 61 QISLGHALYFGLGAYTTAILFTKFGVLPWFGMLAGGLISALIAMALGYPCFRLGGHYFVI 120 Query: 121 ATIVIAEIALLLIQNWDWAGAALGIDIPVRGDSWLKFQFTRSKLPYFYFALALACIAWFV 180 ATIVIAEI LLL QNWDWAGAALGIDIPVR DSWL FQFTRSKLPYFYFALALAC+AWFV Sbjct: 121 ATIVIAEITLLLFQNWDWAGAALGIDIPVRRDSWLTFQFTRSKLPYFYFALALACVAWFV 180 Query: 181 TWWLEDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLVAVGGSFYAQFVSYID 240 TWWLEDSKWGYWWRAVKDNP AAESLGV VFNSKMGAAAVSAFLVA+GGSFYAQFVSYID Sbjct: 181 TWWLEDSKWGYWWRAVKDNPVAAESLGVDVFNSKMGAAAVSAFLVAIGGSFYAQFVSYID 240 Query: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 PESVMGFQFSLLMALPAVLGGIGTLWGP+LGAVILIPLTELTRS+IGGSGRGVDLIVYG Sbjct: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPMLGAVILIPLTELTRSYIGGSGRGVDLIVYGG 300 Query: 301 LIVVISLALPRGLVSVFSLRKGAA 324 LI+ ISLA P+GLVS+FS + A Sbjct: 301 LIIAISLARPQGLVSLFSRKPKPA 324 >ref|YP_780624.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] gb|ABJ05644.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] Length = 326 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/326 (85%), Positives = 297/326 (91%), Gaps = 1/326 (0%) Query: 1 MDTQFAQRRRRDLIVAACLAVIAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 MD FA RRRRDLI AA LA +AA VP+FVKDVYVQNIM+LTLMYAALSQ+WNIL GYCG Sbjct: 1 MDNSFAHRRRRDLITAAVLACLAASVPMFVKDVYVQNIMILTLMYAALSQAWNILGGYCG 60 Query: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLAGGAISALIAMALGYPCFRLRGHYFVI 120 QISLGHALYFGLGAYTTALLFTKFGVLPWFGML GG ISALIAMALGYP FRL+GHYFVI Sbjct: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLGGGVISALIAMALGYPTFRLKGHYFVI 120 Query: 121 ATIVIAEIALLLIQNWDWAGAALGIDIPVRGDSWLKFQFTRSKLPYFYFALALACIAWFV 180 ATIVIAEI LLL NWDWAGAALGIDIP+R DSW FQF RSKLPYFYFALA C+AWFV Sbjct: 121 ATIVIAEIGLLLFHNWDWAGAALGIDIPMRQDSWANFQFPRSKLPYFYFALAFCCVAWFV 180 Query: 181 TWWLEDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLVAVGGSFYAQFVSYID 240 TWWLE+SKWG+WWRAVKDNP+AAESLGVVVFNSKMGAAAVSAFL AVGGSFYA FVSYID Sbjct: 181 TWWLENSKWGFWWRAVKDNPEAAESLGVVVFNSKMGAAAVSAFLTAVGGSFYAMFVSYID 240 Query: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 PESVM FQFSLLMALPAVLGGIGTLWGPVLGA ILIPLTELTRSFIGGSGRGVDLIVYGT Sbjct: 241 PESVMAFQFSLLMALPAVLGGIGTLWGPVLGAAILIPLTELTRSFIGGSGRGVDLIVYGT 300 Query: 301 LIVVISLALPRGLVSVFSLRK-GAAR 325 +I++I+LA P+GL+ +FS R+ G +R Sbjct: 301 VIMLIALARPQGLIGLFSKRRNGGSR 326 >ref|YP_487224.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] gb|ABD08313.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] Length = 328 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 277/323 (85%), Positives = 293/323 (90%) Query: 1 MDTQFAQRRRRDLIVAACLAVIAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 MD +RRRRDLIVA LA IAALVPLFVKDVYVQNIMVLTLMYAALSQ+WNIL GYCG Sbjct: 1 MDEAHLKRRRRDLIVATVLACIAALVPLFVKDVYVQNIMVLTLMYAALSQAWNILGGYCG 60 Query: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLAGGAISALIAMALGYPCFRLRGHYFVI 120 QISLGHALYFGLGAYTTALLFTKFGVLPWFGML GG ISA IA+ALGYP FRLRGHYFVI Sbjct: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLGGGLISAAIALALGYPTFRLRGHYFVI 120 Query: 121 ATIVIAEIALLLIQNWDWAGAALGIDIPVRGDSWLKFQFTRSKLPYFYFALALACIAWFV 180 ATIVIAEI LL NWDWAGAALGIDIPVRGDSW KFQFTRSKLPY+YFAL C+AW V Sbjct: 121 ATIVIAEIGFLLFHNWDWAGAALGIDIPVRGDSWAKFQFTRSKLPYYYFALVFCCVAWLV 180 Query: 181 TWWLEDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLVAVGGSFYAQFVSYID 240 TWWLE+SKWGYWWRAVKDNP+AAESLGVVVFNSKMGAAAVSAFL A+GG+FYA FVSYID Sbjct: 181 TWWLENSKWGYWWRAVKDNPEAAESLGVVVFNSKMGAAAVSAFLTAIGGAFYAMFVSYID 240 Query: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 PESVM FQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSF+GGSGRGVDLI+YGT Sbjct: 241 PESVMTFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFVGGSGRGVDLILYGT 300 Query: 301 LIVVISLALPRGLVSVFSLRKGA 323 +IV+ISLA P GL+ +FS R + Sbjct: 301 VIVLISLARPEGLIGLFSRRPAS 323 >ref|YP_001204598.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL76361.1| putative ABC transporter permiase component [Bradyrhizobium sp. ORS 278] Length = 334 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 288/324 (88%), Positives = 301/324 (92%) Query: 1 MDTQFAQRRRRDLIVAACLAVIAALVPLFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 MD F QRRRRDLI+AA LA +AA VP FVKDVYVQNIMVLTLMYAALSQSWNILSGYCG Sbjct: 1 MDKAFVQRRRRDLILAAFLAAMAAAVPFFVKDVYVQNIMVLTLMYAALSQSWNILSGYCG 60 Query: 61 QISLGHALYFGLGAYTTALLFTKFGVLPWFGMLAGGAISALIAMALGYPCFRLRGHYFVI 120 QISLGHALYFGLGAYTTA+LFTKFGVLPWFGMLAGG ISA+IAMALGYPCFRL GHYFVI Sbjct: 61 QISLGHALYFGLGAYTTAILFTKFGVLPWFGMLAGGLISAVIAMALGYPCFRLGGHYFVI 120 Query: 121 ATIVIAEIALLLIQNWDWAGAALGIDIPVRGDSWLKFQFTRSKLPYFYFALALACIAWFV 180 ATIVIAEI LLL QNWD+AGAALGIDIPVR DSWL FQFTRSKLPYFYFAL LAC+AWFV Sbjct: 121 ATIVIAEITLLLFQNWDFAGAALGIDIPVRRDSWLTFQFTRSKLPYFYFALVLACVAWFV 180 Query: 181 TWWLEDSKWGYWWRAVKDNPDAAESLGVVVFNSKMGAAAVSAFLVAVGGSFYAQFVSYID 240 TWWLEDSKWGYWWRAVKDNP AAESLGV VFNSKMGAAAVSAFLVA+GGSFYAQFVSYID Sbjct: 181 TWWLEDSKWGYWWRAVKDNPLAAESLGVDVFNSKMGAAAVSAFLVAIGGSFYAQFVSYID 240 Query: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPVLGAVILIPLTELTRSFIGGSGRGVDLIVYGT 300 PESVMGFQFSLLMALPAVLGGIGTLWGP+LGAVILIPLTELTRS+IGGSGRGVDLIVYG Sbjct: 241 PESVMGFQFSLLMALPAVLGGIGTLWGPMLGAVILIPLTELTRSYIGGSGRGVDLIVYGG 300 Query: 301 LIVVISLALPRGLVSVFSLRKGAA 324 LI+ ISLA P+GLVS+FS + A Sbjct: 301 LIIAISLARPQGLVSLFSRKPKTA 324