BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0042.p (486 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japo... 763 0.0 ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14... 736 0.0 ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrh... 712 0.0 ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris B... 711 0.0 ref|ZP_08528242.1| ATP-dependent DNA helicase [Agrobacterium sp.... 709 0.0 >ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 685 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/431 (85%), Positives = 399/431 (92%), Gaps = 1/431 (0%) Query: 9 YLDALNAEQRRAVEHGVGKDCIVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 68 YLD LNAEQRRAVEHGV VGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL Sbjct: 4 YLDTLNAEQRRAVEHGVADGATVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 63 Query: 69 MTFSRRAAAEMAGRVERIARRVLGDR-ASVMTDALNWAGTFHGIGARLLREFAERIGLDP 127 MTFSRRAAAEMAGRVERIAR+VLG+ A++M DAL WAGTFHGIGARLLRE+AERIG+DP Sbjct: 64 MTFSRRAAAEMAGRVERIARKVLGENNAAIMRDALTWAGTFHGIGARLLREYAERIGVDP 123 Query: 128 AFTIHDREDSADLINLVRHDLGFSRTESRFPTKGTCLAIYSRCVNAEMPIEAVLGQFFPW 187 AFTIHDREDSADL+NLVRH+ G S+TESRFP KGTCL+IYSRCVNAEM IE VLGQ +PW Sbjct: 124 AFTIHDREDSADLMNLVRHERGLSKTESRFPAKGTCLSIYSRCVNAEMEIEKVLGQHYPW 183 Query: 188 CSGWASELKQLFGAYVEAKQRQNVLDYDDLLLYWAQMVTDAALAEEIGGRFDHVMVDEYQ 247 C GWA+ELK LF AYVEAKQ Q+VLDYDDLLLYW+QM++DA +AEEIGGRFDHV+VDEYQ Sbjct: 184 CVGWAAELKGLFVAYVEAKQAQHVLDYDDLLLYWSQMMSDALIAEEIGGRFDHVLVDEYQ 243 Query: 248 DTNRLQSSILLALKPTGRGLTVVGDDAQSIYSFRAATVRNILDFPAQFSPAAEIVTLDRN 307 DTNRLQSSILLALKP GRGLTVVGDDAQSIYSFRAATVRNIL+FP FSP AE++TLDRN Sbjct: 244 DTNRLQSSILLALKPDGRGLTVVGDDAQSIYSFRAATVRNILEFPQSFSPRAEMITLDRN 303 Query: 308 YRSTQPILSAANGVISLAKERFTKNLWTDRTSTRKPLLVTIRDEADQARYIVEQVLANRE 367 YRSTQ +L+AANGVI LA+ERFTKNLWTDRTS +KP LVT+ DEADQARYIVE+VLANRE Sbjct: 304 YRSTQAVLAAANGVIGLARERFTKNLWTDRTSAQKPQLVTVHDEADQARYIVEEVLANRE 363 Query: 368 EGTLLKHQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFAANPR 427 +G LLKHQAVLFRTSSHSGPLE+ELTRRNIPFVKFGGLKFLDAAHVKD+LA+LRFA NPR Sbjct: 364 QGALLKHQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLAMLRFAENPR 423 Query: 428 DRVAGFRILHL 438 DRVAGFRILHL Sbjct: 424 DRVAGFRILHL 434 >ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 689 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/434 (81%), Positives = 390/434 (89%), Gaps = 1/434 (0%) Query: 9 YLDALNAEQRRAVEHGVGKDCIVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 68 YLD+LN EQRRAVEHG APLLVIAGAGSGKTNTLAHRVAHLIV GADPRRILL Sbjct: 7 YLDSLNPEQRRAVEHGTAGPGPF-APLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 65 Query: 69 MTFSRRAAAEMAGRVERIARRVLGDRASVMTDALNWAGTFHGIGARLLREFAERIGLDPA 128 MTFSRRAA+EM RVERIAR+V+GD A V+TDAL W+GTFHGIGARLLR+++++IGLDP Sbjct: 66 MTFSRRAASEMTRRVERIARKVMGDNAGVLTDALTWSGTFHGIGARLLRDYSDQIGLDPQ 125 Query: 129 FTIHDREDSADLINLVRHDLGFSRTESRFPTKGTCLAIYSRCVNAEMPIEAVLGQFFPWC 188 FTIHDREDSADL+NL+RH+ GFS+TESRFPTKGTCL+IYSRCVNAE IE VLG +PWC Sbjct: 126 FTIHDREDSADLMNLIRHEKGFSKTESRFPTKGTCLSIYSRCVNAETAIEQVLGASYPWC 185 Query: 189 SGWASELKQLFGAYVEAKQRQNVLDYDDLLLYWAQMVTDAALAEEIGGRFDHVMVDEYQD 248 SGWA+ELK+LF AYVEAKQ+QNVLDYDDLLLYWAQ ++D ALA++IGGRFDHV+VDEYQD Sbjct: 186 SGWATELKELFAAYVEAKQKQNVLDYDDLLLYWAQTMSDPALADDIGGRFDHVLVDEYQD 245 Query: 249 TNRLQSSILLALKPTGRGLTVVGDDAQSIYSFRAATVRNILDFPAQFSPAAEIVTLDRNY 308 TNRLQSSILLALKP G GLTVVGDDAQSIYSFRAATVRNILDFP QFSP A ++TLDRNY Sbjct: 246 TNRLQSSILLALKPGGHGLTVVGDDAQSIYSFRAATVRNILDFPTQFSPPASVITLDRNY 305 Query: 309 RSTQPILSAANGVISLAKERFTKNLWTDRTSTRKPLLVTIRDEADQARYIVEQVLANREE 368 RSTQ IL+AANGVI LAKERFTKNLWT+R S +P LVT+RDEADQAR+IVE++L NRE Sbjct: 306 RSTQTILAAANGVIDLAKERFTKNLWTERASGSRPQLVTVRDEADQARFIVERILENRES 365 Query: 369 GTLLKHQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFAANPRD 428 GTLLK QAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAH+KDMLALLRF NPRD Sbjct: 366 GTLLKEQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHIKDMLALLRFIENPRD 425 Query: 429 RVAGFRILHLXRAV 442 RVAGFR+LHL V Sbjct: 426 RVAGFRLLHLLPGV 439 >ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS 278] emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS 278] Length = 686 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/430 (80%), Positives = 376/430 (87%), Gaps = 1/430 (0%) Query: 9 YLDALNAEQRRAVEHGVGKDCIVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 68 YLD LN EQRRAVEHG G G PLL+IAGAGSGKTNTLAHRVAHL+V GADPRRILL Sbjct: 8 YLDDLNPEQRRAVEHG-GTSAAPGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILL 66 Query: 69 MTFSRRAAAEMAGRVERIARRVLGDRASVMTDALNWAGTFHGIGARLLREFAERIGLDPA 128 MTFSRRAA+EM+ RVERIAR+VLG +A +T L WAGTFHG+GAR+LRE+AERIGLDP Sbjct: 67 MTFSRRAASEMSRRVERIARKVLGGQAEAITAGLTWAGTFHGLGARMLREYAERIGLDPV 126 Query: 129 FTIHDREDSADLINLVRHDLGFSRTESRFPTKGTCLAIYSRCVNAEMPIEAVLGQFFPWC 188 FTIHDREDSADL+NLVRH+ G S T+ RFPTKGTCLAIYSRCVNA+MP++ L + FPWC Sbjct: 127 FTIHDREDSADLMNLVRHERGLSNTQRRFPTKGTCLAIYSRCVNADMPLDEALVRHFPWC 186 Query: 189 SGWASELKQLFGAYVEAKQRQNVLDYDDLLLYWAQMVTDAALAEEIGGRFDHVMVDEYQD 248 + WA ELK LF AYVEAKQ VLDYDDLLLYWAQM+ D +A EIG RFDHV+VDEYQD Sbjct: 187 AEWAGELKGLFAAYVEAKQANAVLDYDDLLLYWAQMMADETIAREIGERFDHVLVDEYQD 246 Query: 249 TNRLQSSILLALKPTGRGLTVVGDDAQSIYSFRAATVRNILDFPAQFSPAAEIVTLDRNY 308 TNRLQS ILL LKP G GLTVVGDDAQSIY+FRAATVRNIL+FP QFSP A+IVTLDRNY Sbjct: 247 TNRLQSQILLGLKPDGAGLTVVGDDAQSIYAFRAATVRNILEFPDQFSPRADIVTLDRNY 306 Query: 309 RSTQPILSAANGVISLAKERFTKNLWTDRTSTRKPLLVTIRDEADQARYIVEQVLANREE 368 RSTQPILSAAN VI LA+ERFTKNLWTDRT++RKP LVT+RDE DQARYIVEQVLA REE Sbjct: 307 RSTQPILSAANAVIGLARERFTKNLWTDRTASRKPQLVTVRDETDQARYIVEQVLAKREE 366 Query: 369 GTLLKHQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFAANPRD 428 G +LK QAVLFRTSSHSGPLE+ELTRRNIPFVKFGGLKFLDAAHVKDMLA LRF NPRD Sbjct: 367 GIVLKQQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDMLACLRFVENPRD 426 Query: 429 RVAGFRILHL 438 R+AGFR+LHL Sbjct: 427 RIAGFRVLHL 436 >ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] Length = 700 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/435 (79%), Positives = 383/435 (88%), Gaps = 2/435 (0%) Query: 8 AYLDALNAEQRRAVEHGVGKDCIVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRIL 67 AYLD LN +QR AVEHG+ D + +PLLVIAGAGSGKTNTLAHRVAHL+V GADPRR+L Sbjct: 21 AYLDDLNPQQRCAVEHGI--DGSLASPLLVIAGAGSGKTNTLAHRVAHLLVHGADPRRLL 78 Query: 68 LMTFSRRAAAEMAGRVERIARRVLGDRASVMTDALNWAGTFHGIGARLLREFAERIGLDP 127 LMTFSRRAA+EM RVERIAR+ +G+ A++MT A++WAGTFHG+GARLLRE AE++GLDP Sbjct: 79 LMTFSRRAASEMIRRVERIARKAIGEPAAIMTGAMSWAGTFHGVGARLLRERAEQLGLDP 138 Query: 128 AFTIHDREDSADLINLVRHDLGFSRTESRFPTKGTCLAIYSRCVNAEMPIEAVLGQFFPW 187 FTIHDRED+ADLINLVRH LGFS+TESRFPTKGTCL+IYSRCVNAE PIE VLG +FPW Sbjct: 139 GFTIHDREDAADLINLVRHQLGFSKTESRFPTKGTCLSIYSRCVNAEAPIEQVLGSWFPW 198 Query: 188 CSGWASELKQLFGAYVEAKQRQNVLDYDDLLLYWAQMVTDAALAEEIGGRFDHVMVDEYQ 247 C+GWA+ELKQLF YVEAKQ+QNVLDYDDLLLYWAQ + D + A ++ RFDHV+VDEYQ Sbjct: 199 CAGWATELKQLFAGYVEAKQQQNVLDYDDLLLYWAQAMRDPSFAADLASRFDHVLVDEYQ 258 Query: 248 DTNRLQSSILLALKPTGRGLTVVGDDAQSIYSFRAATVRNILDFPAQFSPAAEIVTLDRN 307 DTN LQSSILLALKP G GLTVVGDDAQSIY+FRAATVRNILDFP QFSP A IVTLDRN Sbjct: 259 DTNALQSSILLALKPDGIGLTVVGDDAQSIYAFRAATVRNILDFPNQFSPRATIVTLDRN 318 Query: 308 YRSTQPILSAANGVISLAKERFTKNLWTDRTSTRKPLLVTIRDEADQARYIVEQVLANRE 367 YRSTQ IL AANGVI LAKERFTKNLW+DR +PLLV +RDEADQARYIV++VL RE Sbjct: 319 YRSTQGILKAANGVIELAKERFTKNLWSDREDGTRPLLVAVRDEADQARYIVDRVLETRE 378 Query: 368 EGTLLKHQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFAANPR 427 G LLK QAVLFRTSSHSGPLE+ELTRRNIPFVKFGGLKFLDAAHVKD+LALLRFA NPR Sbjct: 379 TGALLKQQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDLLALLRFAQNPR 438 Query: 428 DRVAGFRILHLXRAV 442 DRVAGFR+L L + V Sbjct: 439 DRVAGFRVLQLLQGV 453 >ref|ZP_08528242.1| ATP-dependent DNA helicase [Agrobacterium sp. ATCC 31749] gb|EGL65105.1| ATP-dependent DNA helicase [Agrobacterium sp. ATCC 31749] Length = 688 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/432 (78%), Positives = 387/432 (89%), Gaps = 1/432 (0%) Query: 8 AYLDALNAEQRRAVEHGVG-KDCIVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRI 66 AYLD LN +QR+AVEHGVG D PLL+IAGAGSGKTNTLAHRVAHLIV GADPRRI Sbjct: 4 AYLDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRI 63 Query: 67 LLMTFSRRAAAEMAGRVERIARRVLGDRASVMTDALNWAGTFHGIGARLLREFAERIGLD 126 LLMTFSRRAA+EM+ RVERI ++V+G +++MTDAL W+GTFHGIGARLLR +AE+IGL+ Sbjct: 64 LLMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLN 123 Query: 127 PAFTIHDREDSADLINLVRHDLGFSRTESRFPTKGTCLAIYSRCVNAEMPIEAVLGQFFP 186 FTIHDREDSADL+NLVRH+LGFS+TESRFPTKGTCLAIYSR VN++ P++ +L Q +P Sbjct: 124 IDFTIHDREDSADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYP 183 Query: 187 WCSGWASELKQLFGAYVEAKQRQNVLDYDDLLLYWAQMVTDAALAEEIGGRFDHVMVDEY 246 W + W SELK+LF AYVEAKQ QNVLDYDDLLLYWAQMV+D LA++IG RFDHVMVDEY Sbjct: 184 WVADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVSDPILADDIGNRFDHVMVDEY 243 Query: 247 QDTNRLQSSILLALKPTGRGLTVVGDDAQSIYSFRAATVRNILDFPAQFSPAAEIVTLDR 306 QDTNRLQ+S+L+A+KP GRGLTVVGDDAQSIYSFRAATVRNILDFPA FSPAA+I+TLDR Sbjct: 244 QDTNRLQASVLMAMKPAGRGLTVVGDDAQSIYSFRAATVRNILDFPACFSPAADIITLDR 303 Query: 307 NYRSTQPILSAANGVISLAKERFTKNLWTDRTSTRKPLLVTIRDEADQARYIVEQVLANR 366 NYRSTQPIL+AANGVI LA+ERFTKNLWT+R S +P LVT++DE +QA +I++Q+LANR Sbjct: 304 NYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANFIIDQILANR 363 Query: 367 EEGTLLKHQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFAANP 426 E GT LK QAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLD+AHVKDMLA+LRFA NP Sbjct: 364 ETGTTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNP 423 Query: 427 RDRVAGFRILHL 438 RDRVAGFR+L + Sbjct: 424 RDRVAGFRLLQM 435