BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0040.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004109360.1| FeS assembly protein SufD [Rhodopseudomonas ... 588 e-166 ref|YP_569589.1| FeS assembly protein SufD [Rhodopseudomonas pal... 586 e-165 ref|YP_781882.1| FeS assembly protein SufD [Rhodopseudomonas pal... 579 e-163 ref|NP_947808.1| FeS assembly protein SufD [Rhodopseudomonas pal... 576 e-162 ref|YP_001991728.1| FeS assembly protein SufD [Rhodopseudomonas ... 575 e-162 >ref|YP_004109360.1| FeS assembly protein SufD [Rhodopseudomonas palustris DX-1] gb|ADU44627.1| FeS assembly protein SufD [Rhodopseudomonas palustris DX-1] Length = 437 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 298/440 (67%), Positives = 345/440 (78%), Gaps = 5/440 (1%) Query: 2 MNV-VAKTETGRALGDAFAVVRDRLPGEGKIADQRRQAFEAYERSGLPHRRIEDWKYTDL 60 MN+ V K E D FA RLP GK+ + RRQA + ++R GLPHRRIEDWKYTDL Sbjct: 1 MNIAVVKAEKPDTASDNFAAAGARLPVAGKLDETRRQALDVFQRIGLPHRRIEDWKYTDL 60 Query: 61 RALMREVLPLAASPDDAALSRARAVVQARAIEGVRRLVLVDGAFASDLSDWQDLEKGLSI 120 RA MREVLP+A +PD +AL RA A AI GVRRLVLVDGA A LSD LE GLSI Sbjct: 61 RASMREVLPVAPAPDASALVRAEAAAGLHAIAGVRRLVLVDGALAPGLSDLAGLEAGLSI 120 Query: 121 NPLRLALEAGDEIVATQALASDIANPMVALNGAMATDGVVIDVADGTVLTQPLHIVHVAS 180 LR AL++GD+ V L+ D A+PM ALN A+ TDGVVI+VADGT L +PLHI+H+AS Sbjct: 121 RSLREALQSGDDCV----LSLDTADPMAALNTALMTDGVVIEVADGTTLARPLHILHIAS 176 Query: 181 GTAPASTFTRSLLRLGRDAGVTLVESYLAADGAKAYQTHDGLVIAIGDNARLDHVRLVED 240 G AP + FTRS + LG+DA T+VESY+A +GA +YQ HD VIA+GD ARLD+VR+VED Sbjct: 177 GGAPVAMFTRSRIALGKDAAATVVESYVAGEGAGSYQVHDAAVIAVGDYARLDYVRIVED 236 Query: 241 SVDAFNISSATVSLGAHAHFNTFGLTSGGHVSRYQLTVTCSGEGSKVETNGVNLINGKQH 300 S +AFNI+SA VS+GAHAHFN FG+T+GG VSRYQ VT +G SKVETNGVNL+NGKQH Sbjct: 237 SREAFNITSAAVSVGAHAHFNAFGITTGGLVSRYQAVVTVAGSHSKVETNGVNLLNGKQH 296 Query: 301 ADTTLFMDHAVPHCTSREIFRAVVDDRAHSVFQGRIVVRPDAQKTDAKMMTRALLLSDDA 360 ADTTL M+H VP C SRE FRAV DDR HSVFQGRI VR AQ+TDAKMMTRALLLSD+A Sbjct: 297 ADTTLVMNHDVPDCVSREGFRAVCDDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEA 356 Query: 361 EADNKPELEIFADDVTCGHGATTGALDESLLFYMRARGLPEKEAQALLIQAFVGEAIESI 420 E DNKPELEIFADDVTCGHGA GALD+SLLFY+RARGLP+KEA+A+LIQAFVGEAIE+I Sbjct: 357 EVDNKPELEIFADDVTCGHGAAVGALDDSLLFYLRARGLPQKEAEAMLIQAFVGEAIEAI 416 Query: 421 ASDTLREVAIATAQRWLQAR 440 A D LRE+ A A RWL+AR Sbjct: 417 ADDDLRELVTAAAVRWLEAR 436 >ref|YP_569589.1| FeS assembly protein SufD [Rhodopseudomonas palustris BisB5] gb|ABE39688.1| FeS assembly protein SufD [Rhodopseudomonas palustris BisB5] Length = 437 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 298/436 (68%), Positives = 350/436 (80%), Gaps = 4/436 (0%) Query: 5 VAKTETGRALGDAFAVVRDRLPGEGKIADQRRQAFEAYERSGLPHRRIEDWKYTDLRALM 64 VAKTE G FA + PG GK+AD RR+AF+ ++R GLPHRRIE+WKYTDLRALM Sbjct: 5 VAKTEKADVAGANFASIVASQPGAGKVADARREAFDEFQRIGLPHRRIEEWKYTDLRALM 64 Query: 65 REVLPLAASPDDAALSRARAVVQARAIEGVRRLVLVDGAFASDLSDWQDLEKGLSINPLR 124 REVLP+A +PD AAL+RA A V+ AI+GVRRLVLVDGA A LSD LE GLSI LR Sbjct: 65 REVLPVAPTPDAAALARAEAAVKLHAIDGVRRLVLVDGALAVALSDLSALEAGLSIRSLR 124 Query: 125 LALEAGDEIVATQALASDIANPMVALNGAMATDGVVIDVADGTVLTQPLHIVHVASGTAP 184 AL+AGD+ + L+ D NPM ALN A+ TDGVVID+ADG L +PLHIVH+ASG AP Sbjct: 125 EALDAGDD----RLLSLDTGNPMTALNTALMTDGVVIDIADGAKLAKPLHIVHIASGGAP 180 Query: 185 ASTFTRSLLRLGRDAGVTLVESYLAADGAKAYQTHDGLVIAIGDNARLDHVRLVEDSVDA 244 ++ FTRSL+ LG+++ T+VES++A +GA YQ HD V+ +GD ARLDHVRL+EDS DA Sbjct: 181 SAMFTRSLVSLGKESAATVVESFVAGEGAGVYQVHDTAVMTVGDRARLDHVRLIEDSRDA 240 Query: 245 FNISSATVSLGAHAHFNTFGLTSGGHVSRYQLTVTCSGEGSKVETNGVNLINGKQHADTT 304 FNI+SA V +GAHAH++ G+T+G VSRYQL V +GE ++VETNGVNL+NGKQHADTT Sbjct: 241 FNIASAEVRVGAHAHYSVAGVTTGALVSRYQLVVNIAGEYARVETNGVNLLNGKQHADTT 300 Query: 305 LFMDHAVPHCTSREIFRAVVDDRAHSVFQGRIVVRPDAQKTDAKMMTRALLLSDDAEADN 364 L M+H VPHC SRE FRAVVDDR HSVFQGRI VR AQ+TDAKMMTRALLLSD+AEADN Sbjct: 301 LVMNHDVPHCVSREGFRAVVDDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADN 360 Query: 365 KPELEIFADDVTCGHGATTGALDESLLFYMRARGLPEKEAQALLIQAFVGEAIESIASDT 424 KPELEIFADDVTCGHGA GALD+ LLFY+RARGL EKEA+ALLIQAFVGEAIE+IA D Sbjct: 361 KPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEAEALLIQAFVGEAIEAIADDN 420 Query: 425 LREVAIATAQRWLQAR 440 LRE+AIA A RWL+AR Sbjct: 421 LRELAIAAATRWLEAR 436 >ref|YP_781882.1| FeS assembly protein SufD [Rhodopseudomonas palustris BisA53] gb|ABJ06902.1| Iron-regulated ABC transporter permease protein SufD [Rhodopseudomonas palustris BisA53] Length = 439 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 293/439 (66%), Positives = 341/439 (77%), Gaps = 1/439 (0%) Query: 2 MNVVAKTETGRALGDAFAVVRDRLPGEGKIADQRRQAFEAYERSGLPHRRIEDWKYTDLR 61 M VA G AF VR RLPG +A++R AFE+Y R GLP+RR+EDWKYTDLR Sbjct: 1 MTAVAIKSDGSQAASAFEAVRGRLPGAAAVAEKRELAFESYARQGLPNRRVEDWKYTDLR 60 Query: 62 ALMREVLPLAASPDDAALSRARAVVQARAIEGVRRLVLVDGAFASDLSDWQDLEKGLSIN 121 LMREVLPLAA PD A L+RA ++ AIEGVRR+VLVDG F +DLSD DLE GL I Sbjct: 61 VLMREVLPLAAGPDHATLARAADALKLHAIEGVRRIVLVDGVFVADLSDLADLEDGLVIR 120 Query: 122 PLRLALEAGDEIVATQALASDIANPMVALNGAMATDGVVIDVADGTVLTQPLHIVHVASG 181 LR AL+ G E + + A + A+ MVALN AM TDGVVI+V VL +PL IVHVA+ Sbjct: 121 ALREALDQG-EPLEDRWPAPETADAMVALNTAMMTDGVVIEVGADIVLARPLQIVHVAAA 179 Query: 182 TAPASTFTRSLLRLGRDAGVTLVESYLAADGAKAYQTHDGLVIAIGDNARLDHVRLVEDS 241 P + TRSLLRLGR+A TLVES++AA G K YQTHD L IAI D ARL+ +RL ED+ Sbjct: 180 ATPVAIVTRSLLRLGRNARATLVESFVAAGGTKGYQTHDALQIAIEDGARLEQIRLNEDA 239 Query: 242 VDAFNISSATVSLGAHAHFNTFGLTSGGHVSRYQLTVTCSGEGSKVETNGVNLINGKQHA 301 DAF+I+S +LGA A NTF LT+GG VSRYQ + +GEGS+V TNGVNL+NG QH Sbjct: 240 TDAFHIASCFATLGASAGLNTFNLTTGGAVSRYQAFIRFNGEGSEVMTNGVNLLNGTQHG 299 Query: 302 DTTLFMDHAVPHCTSREIFRAVVDDRAHSVFQGRIVVRPDAQKTDAKMMTRALLLSDDAE 361 DTTLF+DHAVPHC+SRE+FRAV+D RAHSVFQGRI+VRP AQKTDAKMMTRALLLSD+AE Sbjct: 300 DTTLFLDHAVPHCSSREVFRAVLDGRAHSVFQGRIIVRPHAQKTDAKMMTRALLLSDEAE 359 Query: 362 ADNKPELEIFADDVTCGHGATTGALDESLLFYMRARGLPEKEAQALLIQAFVGEAIESIA 421 AD+KPELEIFADDVTCGHG+TTGALDESLLFY+RARGLPEK+AQ+LLIQAFVGEAIESIA Sbjct: 360 ADSKPELEIFADDVTCGHGSTTGALDESLLFYLRARGLPEKDAQSLLIQAFVGEAIESIA 419 Query: 422 SDTLREVAIATAQRWLQAR 440 D LR +AI +RWL+AR Sbjct: 420 DDDLRALAITAGERWLEAR 438 >ref|NP_947808.1| FeS assembly protein SufD [Rhodopseudomonas palustris CGA009] emb|CAE27907.1| sufD, needed for fhuF Fe-S center production/stability [Rhodopseudomonas palustris CGA009] Length = 437 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 303/440 (68%), Positives = 356/440 (80%), Gaps = 5/440 (1%) Query: 2 MNV-VAKTETGRALGDAFAVVRDRLPGEGKIADQRRQAFEAYERSGLPHRRIEDWKYTDL 60 MN+ VAK + D FA V R+PG GK+AD RRQA + ++R GLPHRRIEDWKYTDL Sbjct: 1 MNIAVAKPDKPDTASDNFAAVSARVPGAGKVADTRRQALDTFQRIGLPHRRIEDWKYTDL 60 Query: 61 RALMREVLPLAASPDDAALSRARAVVQARAIEGVRRLVLVDGAFASDLSDWQDLEKGLSI 120 RALMREVLPLAA+P+ AAL++A A + AI+GVRRLVLVDG A LS+ LE GLSI Sbjct: 61 RALMREVLPLAAAPEAAALAQAEAAAKLHAIDGVRRLVLVDGVLAPGLSELAGLEAGLSI 120 Query: 121 NPLRLALEAGDEIVATQALASDIANPMVALNGAMATDGVVIDVADGTVLTQPLHIVHVAS 180 LR AL++GD+ V L+ D A+PMVALN A+ TDG+VI+VADGT L +PLHI+H+AS Sbjct: 121 RSLREALQSGDDRV----LSLDTADPMVALNTALMTDGLVIEVADGTTLARPLHILHIAS 176 Query: 181 GTAPASTFTRSLLRLGRDAGVTLVESYLAADGAKAYQTHDGLVIAIGDNARLDHVRLVED 240 G APA+ FTRS + LG A T+VESY+A +GA AYQ HD VI IGD+ARLD+VR+VED Sbjct: 177 GGAPAAMFTRSRISLGNAAVATVVESYVAGEGAAAYQVHDSAVITIGDHARLDYVRIVED 236 Query: 241 SVDAFNISSATVSLGAHAHFNTFGLTSGGHVSRYQLTVTCSGEGSKVETNGVNLINGKQH 300 S +AFNI+SATV++GAHAHFN FG+T+GG VSRYQ VT +G S+VETNGVNL+NGKQH Sbjct: 237 SREAFNITSATVAVGAHAHFNAFGITTGGLVSRYQAVVTVAGSHSEVETNGVNLLNGKQH 296 Query: 301 ADTTLFMDHAVPHCTSREIFRAVVDDRAHSVFQGRIVVRPDAQKTDAKMMTRALLLSDDA 360 ADTTL M+H VPHC SRE FRAVVDDR HSVFQGRI VR AQ+TDAKMMTRALLLSD+A Sbjct: 297 ADTTLVMNHDVPHCVSREGFRAVVDDRGHSVFQGRINVRQAAQQTDAKMMTRALLLSDEA 356 Query: 361 EADNKPELEIFADDVTCGHGATTGALDESLLFYMRARGLPEKEAQALLIQAFVGEAIESI 420 E DNKPELEIFADDVTCGHGA GALD+SLLFY+RARGLP+KEA+A+LIQAFVGEAIE+I Sbjct: 357 EVDNKPELEIFADDVTCGHGAAVGALDDSLLFYLRARGLPQKEAEAMLIQAFVGEAIEAI 416 Query: 421 ASDTLREVAIATAQRWLQAR 440 A D LRE+ A A RWL+AR Sbjct: 417 ADDNLRELVTAAAVRWLEAR 436 >ref|YP_001991728.1| FeS assembly protein SufD [Rhodopseudomonas palustris TIE-1] gb|ACF01253.1| FeS assembly protein SufD [Rhodopseudomonas palustris TIE-1] Length = 437 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 302/440 (68%), Positives = 356/440 (80%), Gaps = 5/440 (1%) Query: 2 MNV-VAKTETGRALGDAFAVVRDRLPGEGKIADQRRQAFEAYERSGLPHRRIEDWKYTDL 60 MN+ VAK + D FA V R+PG GK+AD RRQA + ++R GLPHRRIEDWKYTDL Sbjct: 1 MNIAVAKPDKPDTASDNFAAVSARVPGAGKVADTRRQALDTFQRIGLPHRRIEDWKYTDL 60 Query: 61 RALMREVLPLAASPDDAALSRARAVVQARAIEGVRRLVLVDGAFASDLSDWQDLEKGLSI 120 RALMREVLPLAA+P+ AAL++A A + AI+GVRRLVLVDG A LS+ LE GLSI Sbjct: 61 RALMREVLPLAAAPEAAALAQAEAAAKLHAIDGVRRLVLVDGVLAPGLSELAGLEAGLSI 120 Query: 121 NPLRLALEAGDEIVATQALASDIANPMVALNGAMATDGVVIDVADGTVLTQPLHIVHVAS 180 LR AL++GD+ V L+ D A+PMVALN A+ TDG+VI+VADGT LT+PLHI+H+AS Sbjct: 121 RSLREALQSGDDRV----LSLDTADPMVALNTALMTDGLVIEVADGTTLTRPLHILHIAS 176 Query: 181 GTAPASTFTRSLLRLGRDAGVTLVESYLAADGAKAYQTHDGLVIAIGDNARLDHVRLVED 240 G APA+ FTRS + LG A T+VESY+A +GA AYQ HD VI IGD+ARLD+VR+VED Sbjct: 177 GGAPAAMFTRSRISLGNAAVATVVESYVAGEGASAYQVHDSAVITIGDHARLDYVRIVED 236 Query: 241 SVDAFNISSATVSLGAHAHFNTFGLTSGGHVSRYQLTVTCSGEGSKVETNGVNLINGKQH 300 S +AFNI+SATV++GAHAHFN FG+T+GG SRYQ VT +G S+VETNGVNL+NGKQH Sbjct: 237 SREAFNITSATVAVGAHAHFNAFGITTGGLASRYQAVVTVAGSHSEVETNGVNLLNGKQH 296 Query: 301 ADTTLFMDHAVPHCTSREIFRAVVDDRAHSVFQGRIVVRPDAQKTDAKMMTRALLLSDDA 360 ADTTL M+H VPHC SRE FRAVVDDR HSVFQGRI VR AQ+TDAKMMTRALLLSD+A Sbjct: 297 ADTTLVMNHDVPHCVSREGFRAVVDDRGHSVFQGRINVRQAAQQTDAKMMTRALLLSDEA 356 Query: 361 EADNKPELEIFADDVTCGHGATTGALDESLLFYMRARGLPEKEAQALLIQAFVGEAIESI 420 E DNKPELEIFADDVTCGHGA GALD+SLLFY+RARGLP+KEA+A+LI+AFVGEAIE+I Sbjct: 357 EVDNKPELEIFADDVTCGHGAAVGALDDSLLFYLRARGLPQKEAEAMLIRAFVGEAIEAI 416 Query: 421 ASDTLREVAIATAQRWLQAR 440 A D LRE+ A A RWL+AR Sbjct: 417 ADDNLRELVTAAAVRWLEAR 436