BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0242.0036.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205553.1| hypothetical protein BRADO3547 [Bradyrhizobi...   172   1e-41
ref|NP_770985.1| hypothetical protein blr4345 [Bradyrhizobium ja...   172   1e-41
ref|YP_001239948.1| hypothetical protein BBta_3972 [Bradyrhizobi...   169   1e-40
ref|ZP_08630049.1| hypothetical protein CSIRO_3151 [Bradyrhizobi...   152   2e-35
ref|YP_486600.1| TfoX-like [Rhodopseudomonas palustris HaA2] >gi...   146   8e-34

>ref|YP_001205553.1| hypothetical protein BRADO3547 [Bradyrhizobium sp. ORS 278]
 emb|CAL77327.1| conserved hypothetical protein; putative TfoX N-terminal domain
           [Bradyrhizobium sp. ORS 278]
          Length = 178

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 115/155 (74%), Gaps = 7/155 (4%)

Query: 1   MDREFLTDLFADFGPVTLRRMFSGYGISADGTNFALALRAGLYFRADDQTIPQFEAEGCG 60
           MDREFL DLFA FGPVT+RRMFSG+GISADG NFALALR+GLY RAD+ +  +FEA G  
Sbjct: 1   MDREFLIDLFAGFGPVTIRRMFSGFGISADGINFALALRSGLYLRADEASYDKFEAAGSK 60

Query: 61  PFQYQTRSRTVTVNSYWQLPARLFDDSEDLAVWARSALGAAQRAALRKRPR-KRAAARNS 119
           PF Y+TR+RT+TV SYWQ+PA LFDD+++ AVWAR A  AAQ AAL KR R KR AAR+ 
Sbjct: 61  PFSYETRARTMTVRSYWQVPAHLFDDTDEFAVWAREAFAAAQSAALSKRTRKKRVAARSP 120

Query: 120 KAPAKKVAARKAAGKKV------AASKATAKQSSA 148
           ++P KK  A K    K        ++KAT+K +SA
Sbjct: 121 ESPKKKTTAPKPQTTKARPAKARKSAKATSKGASA 155


>ref|NP_770985.1| hypothetical protein blr4345 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49610.1| blr4345 [Bradyrhizobium japonicum USDA 110]
          Length = 161

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 1   MDREFLTDLFADFGPVTLRRMFSGYGISADGTNFALALRAGLYFRADDQTIPQFEAEGCG 60
           MDREFL DLFADFGPVT+R+MFSGYGISADGTNFALALRAGL+ RAD+ TIP FE EG  
Sbjct: 16  MDREFLIDLFADFGPVTIRKMFSGYGISADGTNFALALRAGLFLRADELTIPDFETEGSK 75

Query: 61  PFQYQTRSRTVTVNSYWQLPARLFDDSEDLAVWARSALGAAQRAALRKRPRKRAAARNSK 120
           PFQY TR++TVTVNSYW+LPARLFDDS++LA WAR+AL AAQRA +++RP+ + A++   
Sbjct: 76  PFQYSTRAKTVTVNSYWELPARLFDDSQELAQWARAALAAAQRAKVKQRPKGKKASKKV- 134

Query: 121 APAKKVAARKAAGKKV 136
           AP K VA ++ A K V
Sbjct: 135 APKKPVARKRPAKKAV 150


>ref|YP_001239948.1| hypothetical protein BBta_3972 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36042.1| hypothetical protein BBta_3972 [Bradyrhizobium sp. BTAi1]
          Length = 182

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 96/117 (82%)

Query: 1   MDREFLTDLFADFGPVTLRRMFSGYGISADGTNFALALRAGLYFRADDQTIPQFEAEGCG 60
           MDR++L +LFA FGPVT+RRMFSG+GISADG NFALALR+GLY RAD+ +  +FEA G  
Sbjct: 1   MDRDYLVELFAGFGPVTIRRMFSGFGISADGINFALALRSGLYLRADEASFAKFEAAGSQ 60

Query: 61  PFQYQTRSRTVTVNSYWQLPARLFDDSEDLAVWARSALGAAQRAALRKRPRKRAAAR 117
           PF Y+TR+RT+TV SYWQ+PA LFDD+++  +WAR A  AAQ AALRKR + RAA+R
Sbjct: 61  PFSYETRARTMTVRSYWQVPAHLFDDADEFTLWAREAFVAAQTAALRKRSKTRAASR 117


>ref|ZP_08630049.1| hypothetical protein CSIRO_3151 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP07418.1| hypothetical protein CSIRO_3151 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 158

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 83/99 (83%)

Query: 1  MDREFLTDLFADFGPVTLRRMFSGYGISADGTNFALALRAGLYFRADDQTIPQFEAEGCG 60
          MDR+ L DLF++FGP++LR+MFSG+GI+ADG NFA+ALRAG+ FR D+ TIP+++AEG  
Sbjct: 1  MDRDHLIDLFSEFGPISLRKMFSGFGITADGVNFAMALRAGIIFRVDELTIPRYDAEGAK 60

Query: 61 PFQYQTRSRTVTVNSYWQLPARLFDDSEDLAVWARSALG 99
          PFQY TR++TV VNSY  LP RL+DD E+LA WAR A+G
Sbjct: 61 PFQYDTRNKTVVVNSYRHLPERLYDDPEELAEWAREAVG 99


>ref|YP_486600.1| TfoX-like [Rhodopseudomonas palustris HaA2]
 gb|ABD07689.1| TfoX-like [Rhodopseudomonas palustris HaA2]
          Length = 133

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 100/133 (75%), Gaps = 2/133 (1%)

Query: 1   MDREFLTDLFADFGPVTLRRMFSGYGISADGTNFALALRAGLYFRADDQTIPQFEAEGCG 60
           MDREFL DLF+ FGPVT+RRMFSG+GISADG NFAL ++  +Y RAD +TIP+F+AEG  
Sbjct: 1   MDREFLIDLFSPFGPVTIRRMFSGFGISADGVNFALVIQGAIYLRADAETIPRFQAEGTA 60

Query: 61  PFQYQTRSRTVTVNSYWQLPARLFDDSEDLAVWARSALGAAQRAALRK--RPRKRAAARN 118
           PF Y TR RTVTV SYW+LP RL DD ++LA WAR++L AA+RAAL K  +P+ +  A  
Sbjct: 61  PFHYTTRLRTVTVGSYWRLPDRLLDDPDELAQWARASLAAAERAALTKTRKPKSKPRAAA 120

Query: 119 SKAPAKKVAARKA 131
           S A  K+V  R A
Sbjct: 121 SAAKPKRVRQRGA 133