BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0035.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770987.1| hypothetical protein bll4347 [Bradyrhizobium ja... 628 e-178 ref|YP_577574.1| diguanylate cyclase [Nitrobacter hamburgensis X... 573 e-161 ref|ZP_08630048.1| hypothetical protein CSIRO_3150 [Bradyrhizobi... 561 e-158 ref|YP_001239949.1| hypothetical protein BBta_3973 [Bradyrhizobi... 558 e-157 ref|YP_001205554.1| hypothetical protein BRADO3548 [Bradyrhizobi... 555 e-156 >ref|NP_770987.1| hypothetical protein bll4347 [Bradyrhizobium japonicum USDA 110] dbj|BAC49612.1| bll4347 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/355 (84%), Positives = 334/355 (94%) Query: 1 VVKLLDEHERTLAFAEVALGQIRSLRQTAVPRNYEIWYVYATGYNAPLNKVINETLARSG 60 +VK+LDEHERT+AFAEVALGQIRSLRQTA+PRNYEIWYVYATGYNAPLNK+INETLAR G Sbjct: 1 MVKVLDEHERTMAFAEVALGQIRSLRQTAIPRNYEIWYVYATGYNAPLNKIINETLARHG 60 Query: 61 KLSESDLEQIYETCLSHIKTSDRIDKVGARVIGEIDAVMKLITDALGVSATYDASLVGAS 120 KL+E+DLEQIYET LSHIKT+DRIDKVGARVIGEID VMK++ DALG++ +YDASL GA+ Sbjct: 61 KLTEADLEQIYETYLSHIKTTDRIDKVGARVIGEIDDVMKVLGDALGMTGSYDASLSGAT 120 Query: 121 DKLASATTRDHIKAIVDSLVKSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLT 180 ++L+SA +R+ IKAIV++LV+ST EMRETN+ALE+RL LS++EIS+LQ SLEAIRAESLT Sbjct: 121 ERLSSAKSREQIKAIVETLVRSTSEMRETNKALEDRLTLSRNEISNLQQSLEAIRAESLT 180 Query: 181 DPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVA 240 DPLTGLGNRKYFDR I MAVQ+ALASGEPLSLL+FDIDHFKSFNDSYGHLTGDQVLRLV Sbjct: 181 DPLTGLGNRKYFDRMIGMAVQSALASGEPLSLLLFDIDHFKSFNDSYGHLTGDQVLRLVG 240 Query: 241 QSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR 300 S+KQ IKGQDITARYGGEEFAV+LPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR Sbjct: 241 LSMKQTIKGQDITARYGGEEFAVLLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR 300 Query: 301 VTISVGVSMLKPSDDTDSLIERADACLYAAKRAGRNRVICEADPEYSAEIQTRVA 355 VTISVGVSMLKP DDTD+LIERADACLYAAKR GRNRVICEADPE++ E +RVA Sbjct: 301 VTISVGVSMLKPGDDTDALIERADACLYAAKRNGRNRVICEADPEFAVETHSRVA 355 >ref|YP_577574.1| diguanylate cyclase [Nitrobacter hamburgensis X14] gb|ABE63114.1| diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 354 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/351 (78%), Positives = 314/351 (89%) Query: 5 LDEHERTLAFAEVALGQIRSLRQTAVPRNYEIWYVYATGYNAPLNKVINETLARSGKLSE 64 LDEHERT+AFAEVALGQIRSLRQTA+PRNYEIWYVYA GYN LN+ INETLAR+GKL+E Sbjct: 4 LDEHERTMAFAEVALGQIRSLRQTAIPRNYEIWYVYAAGYNCSLNRAINETLARNGKLTE 63 Query: 65 SDLEQIYETCLSHIKTSDRIDKVGARVIGEIDAVMKLITDALGVSATYDASLVGASDKLA 124 SDLEQIYET LS I+T+DRIDK+GARVI EID VM LITD LG++A++ SL GA++ L+ Sbjct: 64 SDLEQIYETYLSPIRTTDRIDKLGARVINEIDDVMTLITDLLGMTASFGDSLKGATENLS 123 Query: 125 SATTRDHIKAIVDSLVKSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLTDPLT 184 +A R+ +KA+V +L+ STREM+ETN+ALE+RLA+SK EI++LQHSLEAIRAES+TDPLT Sbjct: 124 AADNREQVKAVVGALMTSTREMQETNKALEDRLAISKVEINNLQHSLEAIRAESMTDPLT 183 Query: 185 GLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVAQSLK 244 GLGNRKYFDR+++ AV A+ G PLSLL+FDIDHFKSFND+YGHLTGDQVLRLVA SLK Sbjct: 184 GLGNRKYFDRAVEDAVALAIGEGGPLSLLLFDIDHFKSFNDNYGHLTGDQVLRLVAMSLK 243 Query: 245 QNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGRVTIS 304 Q IKGQDITARYGGEEFAVVLPNTAL QALTVADHIRRAVMAKELKKKSTGEILGRVTIS Sbjct: 244 QTIKGQDITARYGGEEFAVVLPNTALSQALTVADHIRRAVMAKELKKKSTGEILGRVTIS 303 Query: 305 VGVSMLKPSDDTDSLIERADACLYAAKRAGRNRVICEADPEYSAEIQTRVA 355 VGVS+L+ D DSLIERAD+CLYAAKR GRNRVICEADPE S + QTRVA Sbjct: 304 VGVSLLRHGDTPDSLIERADSCLYAAKRNGRNRVICEADPECSTDFQTRVA 354 >ref|ZP_08630048.1| hypothetical protein CSIRO_3150 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07417.1| hypothetical protein CSIRO_3150 [Bradyrhizobiaceae bacterium SG-6C] Length = 355 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 270/355 (76%), Positives = 311/355 (87%) Query: 1 VVKLLDEHERTLAFAEVALGQIRSLRQTAVPRNYEIWYVYATGYNAPLNKVINETLARSG 60 ++ LL+E+ERTLAFAEVALGQIRSLRQ AVPRNYEIWY+YATGYNA LNK+INETL+R+G Sbjct: 1 MIGLLEEYERTLAFAEVALGQIRSLRQNAVPRNYEIWYIYATGYNAALNKIINETLSRNG 60 Query: 61 KLSESDLEQIYETCLSHIKTSDRIDKVGARVIGEIDAVMKLITDALGVSATYDASLVGAS 120 KL+E+DLEQIYET LS +T++RID VG RVI EID VM LITDALG+++T+ +L GA+ Sbjct: 61 KLTEADLEQIYETYLSQTRTTERIDTVGTRVINEIDDVMNLITDALGMTSTFGRNLEGAT 120 Query: 121 DKLASATTRDHIKAIVDSLVKSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLT 180 KL+ A R+ +KA+V++LV +TREM+ETN+ALE RLA SK +IS LQHSLEAIR ESLT Sbjct: 121 QKLSGARDREQVKAVVEALVATTREMQETNRALETRLATSKQQISSLQHSLEAIRNESLT 180 Query: 181 DPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVA 240 DPLT LGNRK+FDR+I+ AV A GEPLSLLM DID+FKSFND+YGHLTGDQVLRLVA Sbjct: 181 DPLTSLGNRKFFDRAIENAVAHAAKCGEPLSLLMLDIDYFKSFNDNYGHLTGDQVLRLVA 240 Query: 241 QSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR 300 SLKQ KGQDITARYGGEEFAVVLPNTALRQALTVAD+IRRAVM+K+LKKKSTGEILGR Sbjct: 241 MSLKQTTKGQDITARYGGEEFAVVLPNTALRQALTVADNIRRAVMSKQLKKKSTGEILGR 300 Query: 301 VTISVGVSMLKPSDDTDSLIERADACLYAAKRAGRNRVICEADPEYSAEIQTRVA 355 VTISVGVSML+P DD D LIERADACLYAAKR GRNRVICEADPE+S + +VA Sbjct: 301 VTISVGVSMLQPGDDRDRLIERADACLYAAKRNGRNRVICEADPEFSPTERIQVA 355 >ref|YP_001239949.1| hypothetical protein BBta_3973 [Bradyrhizobium sp. BTAi1] gb|ABQ36043.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 355 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/355 (74%), Positives = 310/355 (87%) Query: 1 VVKLLDEHERTLAFAEVALGQIRSLRQTAVPRNYEIWYVYATGYNAPLNKVINETLARSG 60 +V LDEHERT+ F E ALGQIR+LR +A PRNYEIWYVYATGYN LN+++NET+AR+G Sbjct: 1 MVNALDEHERTIGFGEFALGQIRALRHSANPRNYEIWYVYATGYNTQLNEILNETIARNG 60 Query: 61 KLSESDLEQIYETCLSHIKTSDRIDKVGARVIGEIDAVMKLITDALGVSATYDASLVGAS 120 +LS+++L+Q+YE+ L+H+KTSDRIDKVGARV+GEID ++ I+DALG +A+YDASL GA Sbjct: 61 ELSQAELDQLYESYLTHLKTSDRIDKVGARVVGEIDDLVGTISDALGRTASYDASLAGAD 120 Query: 121 DKLASATTRDHIKAIVDSLVKSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLT 180 KLASAT+R+ + I+++L ST++MRETN+ LE RL LSK EIS LQ SLEAIRAESLT Sbjct: 121 QKLASATSREQLVDIIEALAHSTKQMRETNRMLEQRLTLSKDEISGLQQSLEAIRAESLT 180 Query: 181 DPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVA 240 DPLTGLGNRKYFDR I+MAV+ L S +PLSLLMFDIDHFKSFNDS+GHLTGDQVLRLV Sbjct: 181 DPLTGLGNRKYFDRMIEMAVEGGLTSNQPLSLLMFDIDHFKSFNDSFGHLTGDQVLRLVG 240 Query: 241 QSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR 300 SLK IKGQDI ARYGGEEFAVVLPNT LRQALTVAD IRRAV A+ELKKKSTGEILGR Sbjct: 241 MSLKNAIKGQDIAARYGGEEFAVVLPNTPLRQALTVADQIRRAVTARELKKKSTGEILGR 300 Query: 301 VTISVGVSMLKPSDDTDSLIERADACLYAAKRAGRNRVICEADPEYSAEIQTRVA 355 VTISVGVSML+P DDTD+LIERADACLYAAKR+GRNRVICE+DPE++A + +VA Sbjct: 301 VTISVGVSMLRPGDDTDALIERADACLYAAKRSGRNRVICESDPEFAAATRGQVA 355 >ref|YP_001205554.1| hypothetical protein BRADO3548 [Bradyrhizobium sp. ORS 278] emb|CAL77328.1| conserved hypothetical protein; putative Diguanylate-cyclase (DGC) or GGDEF domain [Bradyrhizobium sp. ORS 278] Length = 355 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/355 (74%), Positives = 309/355 (87%) Query: 1 VVKLLDEHERTLAFAEVALGQIRSLRQTAVPRNYEIWYVYATGYNAPLNKVINETLARSG 60 +V LDEHERT+AFAEVAL QI++LR +A PRNYEIWYVYATGYNA LN++IN TLAR+G Sbjct: 1 MVNALDEHERTMAFAEVALSQIKTLRHSANPRNYEIWYVYATGYNAQLNEIINGTLARNG 60 Query: 61 KLSESDLEQIYETCLSHIKTSDRIDKVGARVIGEIDAVMKLITDALGVSATYDASLVGAS 120 +LS+S+L+Q+YE+ L+H+K SDRIDKVGARV+GEID +M ++TDALG +A+YDASL GA Sbjct: 61 RLSQSELDQLYESYLAHLKASDRIDKVGARVVGEIDDLMGMLTDALGRTASYDASLAGAD 120 Query: 121 DKLASATTRDHIKAIVDSLVKSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLT 180 LASAT+R+ + I+++L ST++MRETN+ LE RL+LSK EIS LQHSLEAIRAESLT Sbjct: 121 RMLASATSREQLVDIIEALAHSTKQMRETNRILEERLSLSKDEISGLQHSLEAIRAESLT 180 Query: 181 DPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVA 240 DPLTGLGNRKYFDR I+ AV LA+ +PLSLLMFDIDHFKSFNDSYGHLTGDQVLRLV Sbjct: 181 DPLTGLGNRKYFDRMIETAVLTGLATNQPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVG 240 Query: 241 QSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGR 300 +LK +KGQDI ARYGGEEFAVVLPNTALRQAL VAD IRRAV AKELKKKSTGEILGR Sbjct: 241 LTLKHAVKGQDIAARYGGEEFAVVLPNTALRQALAVADQIRRAVTAKELKKKSTGEILGR 300 Query: 301 VTISVGVSMLKPSDDTDSLIERADACLYAAKRAGRNRVICEADPEYSAEIQTRVA 355 VTISVGVSML+P DDTD+LIERADACLYAAK GRNRV+CE+DPEY+ + +VA Sbjct: 301 VTISVGVSMLRPGDDTDALIERADACLYAAKHNGRNRVVCESDPEYATATRGQVA 355