BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0028.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAM75576.1| Bacterial extracellular solute-binding protein, ... 244 7e-63 ref|YP_004490093.1| ABC transporter periplasmic protein [Delftia... 237 1e-60 ref|YP_001562897.1| extracellular solute-binding protein [Delfti... 235 4e-60 ref|YP_004491125.1| ABC transporter periplasmic protein [Delftia... 230 2e-58 ref|YP_001561767.1| extracellular solute-binding protein [Delfti... 229 3e-58 >emb|CAM75576.1| Bacterial extracellular solute-binding protein, family 3 [Magnetospirillum gryphiswaldense MSR-1] Length = 269 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 123/258 (47%), Positives = 167/258 (64%), Gaps = 3/258 (1%) Query: 8 AFVCA-LFLSMTPAAAQ-QTQSRLYEITKSGVLRVCIWPMYYSISFRNPDSGQLEGIDID 65 A VC LF + AQ QT SRL I +G +RVCIWP YYSI++RN +G LEGIDI+ Sbjct: 9 ALVCTTLFCGTALSQAQAQTASRLDRIKSAGKVRVCIWPDYYSITYRNTRTGALEGIDIE 68 Query: 66 LSRELAKDMGVKLDYVETSFGSFIADLQANKCDLGMFGVGATMKRAQAVAFSDPYLTSGV 125 L+RELA D+GVK+++V++SF + IADL +KCD+ M G+G T R + + FS P+L SG+ Sbjct: 69 LARELAADLGVKVEFVDSSFKTLIADLTEDKCDVSMHGIGITPARQEKLDFSRPHLRSGI 128 Query: 126 YAVVRKGGP-ITSWADIDKPGVNAGVSLGSYVENFMRSYFKNAKTVAVAPPATTQAELMA 184 YA+ K P + +WADIDKPG+ G+Y+ + M++ K A VA P + E+M+ Sbjct: 129 YAITTKTNPAVATWADIDKPGIVVAAQAGTYMVDVMKAELKQASLNVVATPEAREQEVMS 188 Query: 185 QRVDVVMTDYPASIKMNAQFDWTTTVAPPENLSVTPYAYVMNQGDQIWLNYVNLFVRTIK 244 R D+ MTDYP S KM A+ DW +APP L+ T YAY + +GD++W + V+ FV K Sbjct: 189 GRADLFMTDYPYSRKMLARHDWAKLLAPPTPLAPTAYAYAVAKGDRLWRDTVDGFVERAK 248 Query: 245 LDGRLKAAAEKNKLGPIV 262 DGRL AA N L IV Sbjct: 249 KDGRLLKAATNNGLEAIV 266 >ref|YP_004490093.1| ABC transporter periplasmic protein [Delftia sp. Cs1-4] gb|AEF91738.1| ABC-type transporter, periplasmic subunit family 3 [Delftia sp. Cs1-4] Length = 306 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 155/251 (61%), Gaps = 2/251 (0%) Query: 15 LSMTPAAAQQTQSRLYEITKSGVLRVCIWPMYYSISFRNPDSGQLEGIDIDLSRELAKDM 74 L+M P AA+ + L + S L+VCIWP YY I++R+ +G+L GID +LS ELAKD+ Sbjct: 57 LAMGPGAARAGEV-LDRVASSHTLKVCIWPDYYGITYRDARTGRLTGIDAELSAELAKDL 115 Query: 75 GVKLDYVETSFGSFIADLQANKCDLGMFGVGATMKRAQAVAFSDPYLTSGVYAVVRKGGP 134 G +L +V++SF + DL ++CD+ MF VG +R Q + F+ PYL+S +Y + K P Sbjct: 116 GARLQHVDSSFSRLVPDLLESRCDVAMFAVGILPQRQQQLRFTQPYLSSDIYGITTKSNP 175 Query: 135 -ITSWADIDKPGVNAGVSLGSYVENFMRSYFKNAKTVAVAPPATTQAELMAQRVDVVMTD 193 + SWADID+PGV V G+++E MR ++A V V PP T + ELMA RVDV MTD Sbjct: 176 AVRSWADIDQPGVQVAVQRGTFMEPVMRESLRHAHLVLVEPPQTREKELMAGRVDVFMTD 235 Query: 194 YPASIKMNAQFDWTTTVAPPENLSVTPYAYVMNQGDQIWLNYVNLFVRTIKLDGRLKAAA 253 YP S K+ DW +APP+ V PY Y + D WL +N FV IK DGRL AA Sbjct: 236 YPYSRKLLDSSDWVQLIAPPQPFHVLPYGYAASPADAQWLARLNQFVSDIKRDGRLARAA 295 Query: 254 EKNKLGPIVAP 264 N L IVAP Sbjct: 296 RHNGLTAIVAP 306 >ref|YP_001562897.1| extracellular solute-binding protein [Delftia acidovorans SPH-1] gb|ABX34512.1| extracellular solute-binding protein family 3 [Delftia acidovorans SPH-1] Length = 306 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 155/251 (61%), Gaps = 2/251 (0%) Query: 15 LSMTPAAAQQTQSRLYEITKSGVLRVCIWPMYYSISFRNPDSGQLEGIDIDLSRELAKDM 74 L+M P AA+ + L + S L+VCIWP YY I++R+ +G+L GID +LS ELAKD+ Sbjct: 57 LAMGPGAARAGEV-LDRVASSHTLKVCIWPDYYGITYRDARTGRLTGIDAELSAELAKDL 115 Query: 75 GVKLDYVETSFGSFIADLQANKCDLGMFGVGATMKRAQAVAFSDPYLTSGVYAVVRKGGP 134 G +L +V++SF + DL ++CD+ MF VG +R Q + F+ PYL+S +Y + K P Sbjct: 116 GARLQHVDSSFSRLVPDLLESRCDVAMFAVGILPQRQQQLRFTQPYLSSDIYGITTKSNP 175 Query: 135 -ITSWADIDKPGVNAGVSLGSYVENFMRSYFKNAKTVAVAPPATTQAELMAQRVDVVMTD 193 + SWA+ID+PGV V G+++E MR ++A V V PP T + ELMA RVDV MTD Sbjct: 176 AVRSWAEIDQPGVQVAVQRGTFMEPVMRESLRHAHLVLVEPPQTREKELMAGRVDVFMTD 235 Query: 194 YPASIKMNAQFDWTTTVAPPENLSVTPYAYVMNQGDQIWLNYVNLFVRTIKLDGRLKAAA 253 YP S K+ DW +APP+ V PY Y + D WL +N FV IK DGRL AA Sbjct: 236 YPYSRKLLDSSDWVQLIAPPKPFHVLPYGYAASPADAQWLARLNQFVSDIKRDGRLARAA 295 Query: 254 EKNKLGPIVAP 264 N L IVAP Sbjct: 296 RHNGLTAIVAP 306 >ref|YP_004491125.1| ABC transporter periplasmic protein [Delftia sp. Cs1-4] gb|AEF92770.1| ABC-type transporter, periplasmic subunit family 3 [Delftia sp. Cs1-4] Length = 279 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 149/237 (62%), Gaps = 1/237 (0%) Query: 29 LYEITKSGVLRVCIWPMYYSISFRNPDSGQLEGIDIDLSRELAKDMGVKLDYVETSFGSF 88 L I +G LRVCIWP YY I+FR+ +G+L GID +LS ELAKD+GV++ YV++SF Sbjct: 43 LERIASTGALRVCIWPDYYGITFRDARTGRLTGIDAELSVELAKDLGVRVQYVDSSFPRL 102 Query: 89 IADLQANKCDLGMFGVGATMKRAQAVAFSDPYLTSGVYAVVRKGGP-ITSWADIDKPGVN 147 I DL ++CD+ MF VG +R + + F+ PYL+S +Y V K + SWADID+PGV Sbjct: 103 IPDLLESRCDVAMFAVGIFAQRQKQLRFTQPYLSSDIYGVTTKSNQTVQSWADIDQPGVQ 162 Query: 148 AGVSLGSYVENFMRSYFKNAKTVAVAPPATTQAELMAQRVDVVMTDYPASIKMNAQFDWT 207 V G+++E MR ++A+ V + PP + + ELMA RVDV MTDYP S ++ DW Sbjct: 163 VAVQRGTFMEPVMRETLRHARLVPIEPPQSREKELMAGRVDVFMTDYPYSRRLLDSSDWA 222 Query: 208 TTVAPPENLSVTPYAYVMNQGDQIWLNYVNLFVRTIKLDGRLKAAAEKNKLGPIVAP 264 +APP+ V PY Y + D WL ++ FV I+ DGRL AA N L IVAP Sbjct: 223 RLIAPPKPFHVIPYGYATSPADTQWLARLDQFVSDIRRDGRLARAARNNGLTAIVAP 279 >ref|YP_001561767.1| extracellular solute-binding protein [Delftia acidovorans SPH-1] gb|ABX33382.1| extracellular solute-binding protein family 3 [Delftia acidovorans SPH-1] Length = 279 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 149/237 (62%), Gaps = 1/237 (0%) Query: 29 LYEITKSGVLRVCIWPMYYSISFRNPDSGQLEGIDIDLSRELAKDMGVKLDYVETSFGSF 88 L I +G LRVCIWP YY I+FR+ +G+L GID +LS ELAKD+GV++ YV++SF Sbjct: 43 LDRIAATGALRVCIWPDYYGITFRDARTGRLTGIDAELSVELAKDLGVRVQYVDSSFPRL 102 Query: 89 IADLQANKCDLGMFGVGATMKRAQAVAFSDPYLTSGVYAVVRKGGP-ITSWADIDKPGVN 147 I DL ++CD+ MF VG +R + + F+ PYL+S +Y V K + SWADID+PGV Sbjct: 103 IPDLLESRCDVAMFAVGILAQRQKQLRFTQPYLSSDIYGVTTKSNQTVQSWADIDQPGVQ 162 Query: 148 AGVSLGSYVENFMRSYFKNAKTVAVAPPATTQAELMAQRVDVVMTDYPASIKMNAQFDWT 207 V G+++E MR ++A+ V + PP + + ELMA RVDV MTDYP S ++ DW Sbjct: 163 VAVQRGTFMEPVMRETLRHARLVPIEPPQSREKELMAGRVDVFMTDYPYSRRLLDSSDWA 222 Query: 208 TTVAPPENLSVTPYAYVMNQGDQIWLNYVNLFVRTIKLDGRLKAAAEKNKLGPIVAP 264 +APP+ V PY Y + D WL ++ FV I+ DGRL AA N L IVAP Sbjct: 223 RLIAPPKPFHVLPYGYATSPADTQWLARLDQFVSDIRRDGRLARAARNNGLTEIVAP 279