BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0027.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_555932.1| polar amino acid ABC transporter inner membrane... 197 1e-48 ref|ZP_08731626.1| ABC-type amino acid transport system permease... 160 2e-37 ref|YP_051060.1| ABC transporter permease [Pectobacterium atrose... 160 2e-37 ref|ZP_05091344.1| ABC-type glutamine transport system, permease... 157 1e-36 ref|YP_004119293.1| polar amino acid ABC transporter, inner memb... 156 2e-36 >ref|YP_555932.1| polar amino acid ABC transporter inner membrane protein [Burkholderia xenovorans LB400] gb|ABE36582.1| amino acid ABC transporter membrane protein, PAAT family [Burkholderia xenovorans LB400] Length = 221 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 148/216 (68%) Query: 3 SYSFRWDVIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVG 62 +Y F W ++ NLG+L G+ +TL ++ V+L VA ++GLVI IM++S + +A Sbjct: 2 NYHFHWGIVGQNLGYLLHGIWLTLAVTAVSLAVAIVIGLVIGIMRISSKGVLKRVAGVYV 61 Query: 63 EIVRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGH 122 E+ RNTP LVQL+WVYY LP++ + + ++ I LS+ SA +++E+FRAGIQ VP G Sbjct: 62 EVFRNTPTLVQLIWVYYCLPVLTGINLSPTSSCIFALSINSAAYVAEIFRAGIQAVPSGQ 121 Query: 123 REAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMEL 182 EAA+ +G++ +++ +I+ PQA+R ++P FV L+KYSSL SV+ V ++T + L Sbjct: 122 LEAARSIGMSYSKAMRKIILPQAVRQMIPPFVNEFVSLLKYSSLVSVLGVADLTYQAQTL 181 Query: 183 SSSTFRPLEIFTFIAVVYFAICWPLTHSIRIWEARL 218 S++TFRP+EIFTFI VVYF +CW ++ + + E ++ Sbjct: 182 STTTFRPIEIFTFIGVVYFLLCWAISAAAHVLEQKI 217 >ref|ZP_08731626.1| ABC-type amino acid transport system permease component [Vibrio nigripulchritudo ATCC 27043] gb|EGU60818.1| ABC-type amino acid transport system permease component [Vibrio nigripulchritudo ATCC 27043] Length = 247 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 135/225 (60%), Gaps = 7/225 (3%) Query: 2 QSYSFRWDVIP-------NNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFA 54 Y + W V+ NL FL +G E T++IS++++ +A LLGL++A+ +S + Sbjct: 19 NDYQWGWYVLDPTTEQGLTNLKFLIAGFEDTIYISLISMFLAMLLGLIVALPALSEKKAL 78 Query: 55 RIIALSVGEIVRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAG 114 R + E VR+ P+LV LLWVYY LP + +V +D AA ++ L++ + F++EVFR G Sbjct: 79 RAVNRVYVESVRSIPVLVLLLWVYYGLPTLLDVSLDYFAAGVIALTIAESAFMAEVFRGG 138 Query: 115 IQTVPVGHREAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGE 174 IQ + G EAA+ LGL Q ++ PQA R +LP L FV ++K SSL SV+ + + Sbjct: 139 IQAIARGQHEAAESLGLNYWQKMRLVILPQAFRQILPPLGNQFVYILKMSSLVSVIGLSD 198 Query: 175 VTRRGMELSSSTFRPLEIFTFIAVVYFAICWPLTHSIRIWEARLA 219 +TRR EL + + PLEI+TF+ + Y + ++ +R E R+A Sbjct: 199 LTRRANELVVNEYLPLEIYTFLVIEYLILILFVSQCVRWLEKRIA 243 >ref|YP_051060.1| ABC transporter permease [Pectobacterium atrosepticum SCRI1043] emb|CAG75869.1| ABC transporter permease protein [Pectobacterium atrosepticum SCRI1043] Length = 221 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 139/219 (63%), Gaps = 6/219 (2%) Query: 5 SFRWD--VIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVG 62 ++WD ++ +N+ L G+ +TL + ++ V+ T LGLV+ I ++ R+ + A Sbjct: 2 HYQWDFSLVWDNIPVLLKGLGVTLELWLIAGVLGTALGLVLGIFRVFGKRWLSLPARFFV 61 Query: 63 EIVRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGH 122 EI RNTP+L+QL+W YY P++ V+ AA++L L+LYSA + +E+FRAG+Q++ G Sbjct: 62 EIFRNTPVLIQLIWFYYAFPVLVGVQFSTFAAAVLALTLYSAAYCTEIFRAGLQSIDHGQ 121 Query: 123 REAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMEL 182 E A+ LG+ R+V PQ +R++LP L ++L K +SLAS+++V E+ +G L Sbjct: 122 WEGAKALGMRHTVILRRVVLPQVLRNMLPALTNRMIELAKVTSLASILAVNELMYQGRLL 181 Query: 183 SSSTFRPLEIFTFIAVVYFAICWPLTHSIRIWEARLARR 221 SS+ +RPLEI T +A++YF + WP ++ ARL RR Sbjct: 182 SSTYYRPLEILTVVALLYFVLIWPGSYL----AARLERR 216 >ref|ZP_05091344.1| ABC-type glutamine transport system, permease component [Ruegeria sp. R11] gb|EEB69380.1| ABC-type glutamine transport system, permease component [Ruegeria sp. R11] Length = 254 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 134/212 (63%), Gaps = 5/212 (2%) Query: 13 NNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVGEIVRNTPILV 72 N+ FL SGM T+ IS++ V++ +LGL++A+ +S R RI+ E++R P+L Sbjct: 38 TNIKFLISGMGDTILISVIAAVISIVLGLLVALPGLSEKRGWRIVNRVYVELIRAIPLLP 97 Query: 73 QLLWVYYVLPIVF-----NVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGHREAAQ 127 L WV+Y LPI+F NV ID +I+ L+L + F +E++RAGIQ++ G REAAQ Sbjct: 98 MLFWVFYGLPIIFRSMGLNVPIDPFWGAIITLALSDSAFTAEIYRAGIQSIAKGQREAAQ 157 Query: 128 VLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMELSSSTF 187 +GL+ AQ+ ++ PQAIR +LP LA F+ ++K S+ ASV+ + E+TRR EL + + Sbjct: 158 TVGLSYAQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGMQELTRRANELVVTEY 217 Query: 188 RPLEIFTFIAVVYFAICWPLTHSIRIWEARLA 219 RPLEI+T + + Y + ++ +R E R+ Sbjct: 218 RPLEIYTLLILEYLILVLLISAGVRWLERRMG 249 >ref|YP_004119293.1| polar amino acid ABC transporter, inner membrane subunit [Pantoea sp. At-9b] gb|ADU72737.1| polar amino acid ABC transporter, inner membrane subunit [Pantoea sp. At-9b] Length = 221 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 133/207 (64%), Gaps = 2/207 (0%) Query: 5 SFRWD--VIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVG 62 +++WD +I N L G+ +TL + +V + T++GL++ + + + R+ +I SV Sbjct: 2 NYQWDFSIIAQNFPVLLKGLGVTLELWLVAGLSGTIIGLILGMARTNSRRWIMVITRSVV 61 Query: 63 EIVRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGH 122 E+ RNTP+L+QL+W YY P++ ++ A+ L L+LY+A + SE+FRAG+Q++ G Sbjct: 62 EVFRNTPVLIQLIWFYYAFPVLVGIQFSTFGAAALALTLYTAAYSSEIFRAGLQSIERGQ 121 Query: 123 REAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMEL 182 E A+ LG++ + RI+ PQ R +LP L ++L K +SLAS+++V E+ +G L Sbjct: 122 WEGAKALGMSRPVALRRIILPQVFRRMLPALTNRMIELAKVTSLASILTVNELMYQGRLL 181 Query: 183 SSSTFRPLEIFTFIAVVYFAICWPLTH 209 SS+ +RP+EI T +A++YF + WP ++ Sbjct: 182 SSTYYRPVEILTVVALLYFVLIWPGSY 208