BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0023.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771232.1| hypothetical protein blr4592 [Bradyrhizobium ja... 449 e-124 ref|YP_532480.1| hypothetical protein RPC_2611 [Rhodopseudomonas... 439 e-121 ref|YP_001240122.1| hypothetical protein BBta_4155 [Bradyrhizobi... 437 e-120 ref|YP_001205769.1| putative signal peptide [Bradyrhizobium sp. ... 435 e-120 ref|YP_569753.1| hypothetical protein RPD_2623 [Rhodopseudomonas... 431 e-118 >ref|NP_771232.1| hypothetical protein blr4592 [Bradyrhizobium japonicum USDA 110] dbj|BAC49857.1| blr4592 [Bradyrhizobium japonicum USDA 110] Length = 406 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 242/408 (59%), Positives = 297/408 (72%), Gaps = 2/408 (0%) Query: 1 MSQQGPVLIVSASTKPSFAAVLDETKLFPVVVSDWNEAGRAIEQVKPAAIIAAAEGVDFV 60 MSQ GP+L VS + +P+F A LDE +LFPVV +DW A RA+EQV+PAA++AA Sbjct: 1 MSQAGPILFVSNAERPAFVAALDEARLFPVVDTDWASAVRAVEQVQPAAVLAAMNSGYEP 60 Query: 61 TLSGLAKRAAARAPYLPVIAVDPATTLPDTVIAFFQSKGLPDRLVARLNASLRVRGLHAT 120 L+ LA++ A ++PYLP +A+D A TLP + F S+G DRL ARL A+ RVR LHAT Sbjct: 61 YLALLARKIADQSPYLPFVALDAAGTLPHNALPF-SSRGNSDRLSARLRAAQRVRTLHAT 119 Query: 121 VMRRLVPPVPIALSDIDPIGEATALLIGRGGAYPTLSVALGERAGVVGALSIEAAAKHLS 180 V+RRL P +AL + DP +AT LLIGRG AYP LSVALGER GV+GALSIEAAAKHL+ Sbjct: 120 VLRRL-PEAKVALPESDPSRDATVLLIGRGAAYPALSVALGERVGVIGALSIEAAAKHLN 178 Query: 181 SRDIDGIVLAEGFTPRVMDAFLTVLTEDVRFRPLPVIVASGELTPRYELPNLEIVTAGPT 240 +RDIDG+VLAEGFT RV DAFLTVL ED RFR LPV+V + +L Y+LPNLE++ P Sbjct: 179 TRDIDGVVLAEGFTARVTDAFLTVLAEDTRFRSLPVVVTAHQLVQTYDLPNLELIPGEPA 238 Query: 241 RIADMALPMIRQHAFEARLGRMLKAIDAKGLIDARTGLLTKAAFERDFATAVYQTAERGG 300 ++A ALP+IRQHA EA+L R L++IDA G +D R+GLLT AF RDF+ AV QT RGG Sbjct: 239 KVAANALPLIRQHAMEAQLSRTLRSIDAGGWLDPRSGLLTTEAFARDFSRAVEQTLARGG 298 Query: 301 ALSVARFTFDDTQPRAQFDGARIISRLMRQADFGAVHDDRSLVVAFAGTDLRNAQAITRR 360 LSVARF FD + PRAQ D ARI+SRLMRQ DFGA D S++V FA TD R A I RR Sbjct: 299 GLSVARFAFDPSNPRAQLDAARILSRLMRQMDFGAAQKDGSVIVVFAETDFRTAHMIARR 358 Query: 361 LASVMRHTQNGRRDTRAEPAVSVATLMPGDSAISLLGRLFGMPERAAS 408 L++VMRHT NG+ + R++P VSV +L D+A SLL RL RAAS Sbjct: 359 LSAVMRHTSNGKHEMRSDPVVSVDSLSSSDTARSLLARLSADASRAAS 406 >ref|YP_532480.1| hypothetical protein RPC_2611 [Rhodopseudomonas palustris BisB18] gb|ABD88161.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 410 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/411 (55%), Positives = 299/411 (72%), Gaps = 4/411 (0%) Query: 1 MSQQGPVLIVSASTKPSFAAVLDETKLFPVVVSDWNEAGRAIEQVKPAAIIAAAEGVDFV 60 MS QGP+++VS+ T + A L + LFPV+ + W+E A+E+++PAA++ + + + Sbjct: 1 MSHQGPIILVSSPTPAALTAALSDANLFPVIDAAWSEVAEAVERLQPAAVVVSGD-YEER 59 Query: 61 TLSGLAKRAAARAPYLPVIAVDPATTLPDTVIAFFQSKGLPDRLVARLNASLRVRGLHAT 120 ++ LA + +A+ PY+P+I DP+ LP I+F +G DRLV RL A+LRVR LHAT Sbjct: 60 AMAALAGQISAKQPYIPLIVTDPSGPLPRNAISFASLEGQFDRLVPRLRAALRVRTLHAT 119 Query: 121 VMRRLV--PPVPIALSDIDPIGEATALLIGRGGAYPTLSVALGERAGVVGALSIEAAAKH 178 V+RR+ P + +L+ DP+ EAT LLIGRG YP LSVALGER GVVG LSIE AA+H Sbjct: 120 VLRRIAADPELRGSLARTDPLDEATVLLIGRGSGYPALSVALGERLGVVGTLSIEGAARH 179 Query: 179 LSSRDIDGIVLAEGFTPRVMDAFLTVLTEDVRFRPLPVIVASGELTPRYELPNLEIVTAG 238 L++RD++GI+L EGF+PRV+DAFLTVL+ED RFR P++V +T Y+LPNLE+ + Sbjct: 180 LNARDLNGIILGEGFSPRVVDAFLTVLSEDARFRNFPILVTVPGVTAGYDLPNLELASGD 239 Query: 239 PTRIADMALPMIRQHAFEARLGRMLKAIDAKGLIDARTGLLTKAAFERDFATAVYQTAER 298 P R D ALP+IRQHAFEARLGR L++IDA GL+D RTGLLT AAF+RDFATAVY + +R Sbjct: 240 PLRAVDDALPLIRQHAFEARLGRTLQSIDAGGLLDPRTGLLTVAAFDRDFATAVYHSHDR 299 Query: 299 GGALSVARFTFDDTQPRAQFDGARIISRLMRQADFGAVHDDRSLVVAFAGTDLRNAQAIT 358 G LSVA+F FD R D ARI+SRLMR+ DFG + DD S++V FA TDLRNA AI Sbjct: 300 GSGLSVAKFAFDQNDDRVLMDAARIVSRLMRKMDFGTLQDDGSIIVVFAETDLRNAHAIA 359 Query: 359 RRLASVMRHT-QNGRRDTRAEPAVSVATLMPGDSAISLLGRLFGMPERAAS 408 RRL+SVMR T + RR++R +P V+VATL+P DSA ++LGRL RAAS Sbjct: 360 RRLSSVMRQTSHSARRESRIDPTVTVATLLPNDSARAVLGRLSQDGRRAAS 410 >ref|YP_001240122.1| hypothetical protein BBta_4155 [Bradyrhizobium sp. BTAi1] gb|ABQ36216.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 410 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 239/411 (58%), Positives = 299/411 (72%), Gaps = 4/411 (0%) Query: 1 MSQQGPVLIVSASTKPSFAAVLDETKLFPVVVSDWNEAGRAIEQVKPAAIIAAAEGVDFV 60 MSQ GP+LIVS S++PS A LD ++ P + + W+ A I +V+PAA++A E D Sbjct: 1 MSQHGPLLIVSRSSRPSLTAALDAAQILPTMEARWDAAAGIISRVQPAAVLAVMEDADAS 60 Query: 61 TLSGLAKRAAARAPYLPVIAVDPA-TTLPDTVIAFFQSKGLPDRLVARLNASLRVRGLHA 119 + +++ AR PY+P+IA+ P TTLPD I S DRL+ARL A+LRVR LH Sbjct: 61 EMRAVSQHLDARKPYVPLIAIAPGETTLPDNAIPLHGSDNT-DRLLARLRAALRVRTLHT 119 Query: 120 TVMRRL-VPPVPIA-LSDIDPIGEATALLIGRGGAYPTLSVALGERAGVVGALSIEAAAK 177 TV+RRL P A + D DP+ +AT LL+GRGG+ P LSVALGER VVGALSIEAAAK Sbjct: 120 TVLRRLDEKKAPDATMPDTDPLSDATVLLLGRGGSLPGLSVALGERMAVVGALSIEAAAK 179 Query: 178 HLSSRDIDGIVLAEGFTPRVMDAFLTVLTEDVRFRPLPVIVASGELTPRYELPNLEIVTA 237 HLSSRDIDGIVL EGF+PRV+DAFL VL ED RFR L V+V + + P EL NLEI+ Sbjct: 180 HLSSRDIDGIVLGEGFSPRVVDAFLAVLAEDTRFRNLAVVVTANQPAPLQELANLEIIAG 239 Query: 238 GPTRIADMALPMIRQHAFEARLGRMLKAIDAKGLIDARTGLLTKAAFERDFATAVYQTAE 297 P IA ALP+IRQHAFEARL R L+AI+A G++D +TGLLT+ AF RDFATAV QT + Sbjct: 240 APAHIAASALPLIRQHAFEARLNRTLRAIEAGGMLDPQTGLLTRTAFARDFATAVSQTQK 299 Query: 298 RGGALSVARFTFDDTQPRAQFDGARIISRLMRQADFGAVHDDRSLVVAFAGTDLRNAQAI 357 GG+L+VARF FD PRAQ+DGARIISRLMR+ DFG D+ S++V FA TDLR+A AI Sbjct: 300 SGGSLAVARFAFDPVSPRAQYDGARIISRLMRRMDFGTHEDNGSVIVVFAETDLRSAHAI 359 Query: 358 TRRLASVMRHTQNGRRDTRAEPAVSVATLMPGDSAISLLGRLFGMPERAAS 408 RRL+SVMRHT +G+RD R EPA+++A L PGD+A +LL R++ +RAAS Sbjct: 360 ARRLSSVMRHTSHGKRDARTEPAITIAALQPGDTARTLLARVYNEAQRAAS 410 >ref|YP_001205769.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL77544.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 410 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 240/411 (58%), Positives = 299/411 (72%), Gaps = 4/411 (0%) Query: 1 MSQQGPVLIVSASTKPSFAAVLDETKLFPVVVSDWNEAGRAIEQVKPAAIIAAAEGVDFV 60 MSQQGP+LIVS ST+PS A L ++ P + W +A AI +V+PAA++A +G D Sbjct: 1 MSQQGPLLIVSPSTRPSLTAALAAAQILPTTEARWADAASAISRVQPAAVLAVMDGADAS 60 Query: 61 TLSGLAKRAAARAPYLPVIAVDPA-TTLPDTVIAFFQSKGLPDRLVARLNASLRVRGLHA 119 ++ L++ AR PY+P+IA+ P LPD I S +RL+ARL A+LRVR LH Sbjct: 61 DIAALSRHVGARKPYIPMIAIAPGDAALPDNAIPLHGSDN-HERLLARLRAALRVRTLHT 119 Query: 120 TVMRRL-VPPVPIA-LSDIDPIGEATALLIGRGGAYPTLSVALGERAGVVGALSIEAAAK 177 TV+RRL P A L D DP+ +AT LL+GRG + P LSVALGER VVGAL IEAAAK Sbjct: 120 TVLRRLDEKKTPDAVLPDTDPLNDATVLLLGRGASMPGLSVALGERMAVVGALRIEAAAK 179 Query: 178 HLSSRDIDGIVLAEGFTPRVMDAFLTVLTEDVRFRPLPVIVASGELTPRYELPNLEIVTA 237 HLSSRDIDGIVL EGF+PRV+DAFL VL ED RFR L V+V + + P EL NLEI+ Sbjct: 180 HLSSRDIDGIVLGEGFSPRVVDAFLAVLAEDTRFRNLGVVVTANQPAPFQELANLEIIAG 239 Query: 238 GPTRIADMALPMIRQHAFEARLGRMLKAIDAKGLIDARTGLLTKAAFERDFATAVYQTAE 297 P RIA ALP+IRQHAFE RL R L+AI+A G++D TGLLT++AF RDFATAV QT + Sbjct: 240 DPQRIAAHALPLIRQHAFETRLNRTLRAIEAGGMLDPLTGLLTRSAFARDFATAVSQTQK 299 Query: 298 RGGALSVARFTFDDTQPRAQFDGARIISRLMRQADFGAVHDDRSLVVAFAGTDLRNAQAI 357 GG+L+VARF FD PRAQ+DGARIISRLMR+ DFG D+ S+VV FA TDLR+A AI Sbjct: 300 SGGSLAVARFAFDPVNPRAQYDGARIISRLMRRMDFGTHEDNGSVVVVFAETDLRSAHAI 359 Query: 358 TRRLASVMRHTQNGRRDTRAEPAVSVATLMPGDSAISLLGRLFGMPERAAS 408 RRL+SVMRHT +G+RDTR+EP+++VA L P D+A +LL R++G +RAAS Sbjct: 360 ARRLSSVMRHTSHGKRDTRSEPSITVAALQPNDTARTLLARVYGEAQRAAS 410 >ref|YP_569753.1| hypothetical protein RPD_2623 [Rhodopseudomonas palustris BisB5] gb|ABE39852.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 407 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 238/415 (57%), Positives = 295/415 (71%), Gaps = 16/415 (3%) Query: 1 MSQQGPVLIVSASTKPSFAAVLDETKLFPVVVSDWNEAGRAIEQVKPAAIIAA-AEGVDF 59 MS P+L+VS A L +LFP V + W+EAG A+ +++P+A+IA A G Sbjct: 1 MSYHAPILVVSDDENSPILAALSAARLFPAVNAGWSEAGDAVARLQPSAVIATEAAGS-- 58 Query: 60 VTLSGLAKRAAARAPYLPVIAVDPATTLPDTVIAFFQSKGLPDRLVARLNASLRVRGLHA 119 +L+ LAK+ AA PY+P+IA+DP LPD I F G DRL+ARL+A+LRVR LHA Sbjct: 59 -SLATLAKQVAAIEPYVPLIALDPRCALPDNAIGF--EGGDLDRLIARLSAALRVRSLHA 115 Query: 120 TVMRRLV-----PPVPIALSDIDPIGEATALLIGRGGAYPTLSVALGERAGVVGALSIEA 174 T +RRL+ P P D DPI +AT LLIGRG AYP LSVALGER GVVGALSIEA Sbjct: 116 TTLRRLLDAGDLPRTP----DSDPIQDATVLLIGRGAAYPALSVALGERVGVVGALSIEA 171 Query: 175 AAKHLSSRDIDGIVLAEGFTPRVMDAFLTVLTEDVRFRPLPVIVASGELTPRYELPNLEI 234 AAKHL++RD+DGI+LAEGF+PRV+DAFLTVL+ED RFR LPV+V R++LPNL+ Sbjct: 172 AAKHLNARDLDGIILAEGFSPRVVDAFLTVLSEDARFRSLPVVVTVPAPERRFDLPNLDF 231 Query: 235 VTAGPTRIADMALPMIRQHAFEARLGRMLKAIDAKGLIDARTGLLTKAAFERDFATAVYQ 294 P RI ALP+IRQHAFEARLGR L+++DA GLID R+GLLT AAFERDFATAVY Sbjct: 232 TQGDPARIVGDALPLIRQHAFEARLGRTLRSLDAGGLIDPRSGLLTPAAFERDFATAVYH 291 Query: 295 TAERGGALSVARFTFDDTQPRAQFDGARIISRLMRQADFGAVHDDRSLVVAFAGTDLRNA 354 RG LSVA+FT + RA FD ARI+SRLMR+ DFG + D S+VV FA TDLR+A Sbjct: 292 AQSRGDGLSVAKFTLNRADHRALFDTARIVSRLMRKMDFGVLQADSSIVVVFAETDLRSA 351 Query: 355 QAITRRLASVMRHT-QNGRRDTRAEPAVSVATLMPGDSAISLLGRLFGMPERAAS 408 QAI RRL +VM+ T + RR+ R +P V++ATLMPGDSA ++L RL + R A+ Sbjct: 352 QAIARRLTAVMKQTSHSSRREGRIDPDVALATLMPGDSARAILARLTKLDTRRAA 406