BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0022.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771231.1| hypothetical protein blr4591 [Bradyrhizobium ja... 392 e-107 ref|YP_001205770.1| putative acid-CoA ligase [Bradyrhizobium sp.... 381 e-103 ref|YP_001240121.1| putative acid-CoA ligase [Bradyrhizobium sp.... 379 e-103 ref|YP_532481.1| putative acid-CoA ligase [Rhodopseudomonas palu... 357 2e-96 ref|YP_004109157.1| AMP-dependent synthetase and ligase [Rhodops... 349 7e-94 >ref|NP_771231.1| hypothetical protein blr4591 [Bradyrhizobium japonicum USDA 110] dbj|BAC49856.1| blr4591 [Bradyrhizobium japonicum USDA 110] Length = 500 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/301 (65%), Positives = 232/301 (77%), Gaps = 7/301 (2%) Query: 15 VNQSITSPTLDTLFKRTLARQPEALALVDPLNKQRITGQTRKRLTYAQADRAISAIAAHF 74 +NQ SPTLDTLF+RTL RQP A AL+DPLNK R+TG +RL+YA+AD AI A++A+F Sbjct: 1 MNQQAVSPTLDTLFQRTLMRQPHATALLDPLNKARVTGHQPRRLSYAEADTAIEALSAYF 60 Query: 75 VQSGLPANTVIAVQLPGTVEFALTVLAAHRVGLVVVPLPLLWRQAELTSVLNRTAARAIV 134 V+SGLPAN+VIA+QLP TVEF LTVLAAHR GLVV LPLLWR AELT+ LNRTAARAIV Sbjct: 61 VESGLPANSVIAIQLPNTVEFVLTVLAAHRAGLVVAVLPLLWRHAELTAALNRTAARAIV 120 Query: 135 SRGRIDGVSYADIAMNAAAEAFSIRHVCGFGPDLPEGMASLDQAILEDSRASRPMIEDGR 194 + R+DGVSY+D+AM+AAAEAFSIRHVCGFG DLPEGMASLD+ + +R +I+DGR Sbjct: 121 TMSRVDGVSYSDLAMHAAAEAFSIRHVCGFGTDLPEGMASLDEVLARPPGTTRAVIQDGR 180 Query: 195 KPALISFDVTSGGLRPVPRAHFGLIA-GLAMSLESDLAPGATIMSAFAPMSFAGICASLV 253 K A+ISFDVT+ G RPVPR HF LIA GLAMSLE+D+ GAT+M+AF PMSFAG+ +SL Sbjct: 181 KAAMISFDVTAEGFRPVPRPHFSLIAGGLAMSLEADIKQGATVMAAFTPMSFAGLASSLA 240 Query: 254 TWLLSGGTLVLHHPFDEDAFETQFNDHACNTLIAPAAGASCLQCALDLAAGDHDRRLSVR 313 WLLSGG L LHHPF+ D E Q N+H C LIAPA Q AL L D R+ Sbjct: 241 VWLLSGGALALHHPFENDVLEQQINEHECEVLIAPA------QLALRLGDSDLAARMPTL 294 Query: 314 R 314 R Sbjct: 295 R 295 >ref|YP_001205770.1| putative acid-CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL77545.1| putative acid-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 514 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/299 (64%), Positives = 233/299 (77%), Gaps = 7/299 (2%) Query: 13 EPVNQSITSPTLDTLFKRTLARQPEALALVDPLNKQRITGQTRKRLTYAQADRAISAIAA 72 + VNQ+ TSPTLD LF+R LAR+P+A+ALVDP NKQR+TG+ RLTY++ADR ISA+AA Sbjct: 11 QKVNQANTSPTLDALFQRILARKPDAVALVDPSNKQRVTGRPPMRLTYSEADRVISALAA 70 Query: 73 HFVQSGLPANTVIAVQLPGTVEFALTVLAAHRVGLVVVPLPLLWRQAELTSVLNRTAARA 132 HF+ +GLPA++VIAVQLP T+EF LTVLAAHR GLVV PLLWRQ+EL + LNRT+ARA Sbjct: 71 HFIDAGLPAHSVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQSELVAALNRTSARA 130 Query: 133 IVSRGRIDGVSYADIAMNAAAEAFSIRHVCGFGPDLPEGMASLDQAILEDSRASRPMIED 192 IV+ +IDGV +AD+AMNAAAEAFSIRHVCGFG DLPEGM SLDQ+I + SR++R ++ D Sbjct: 131 IVTMSKIDGVIHADLAMNAAAEAFSIRHVCGFGSDLPEGMYSLDQSIAKPSRSTRGIMPD 190 Query: 193 GRKPALISFDVTSGGLRPVPRAHFGLIA-GLAMSLESDLAPGATIMSAFAPMSFAGICAS 251 GRK A++SFDVT+ G R VPR H LIA GLA+SLESDL G +MSAF P SFAG+ AS Sbjct: 191 GRKAAIVSFDVTADGFRAVPRTHLSLIAGGLAVSLESDLPQGVNMMSAFLPSSFAGLAAS 250 Query: 252 LVTWLLSGGTLVLHHPFDEDAFETQFNDHACNTLIAPAAGASCLQCALDLAAGDHDRRL 310 +VTWLLSGG+L LHHPFD DA E Q C+TLI PA Q A L G+ RL Sbjct: 251 VVTWLLSGGSLALHHPFDADALEQQLAQLGCDTLIVPA------QLAFRLDEGELAARL 303 >ref|YP_001240121.1| putative acid-CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ36215.1| putative acid-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 502 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/297 (65%), Positives = 234/297 (78%), Gaps = 7/297 (2%) Query: 15 VNQSITSPTLDTLFKRTLARQPEALALVDPLNKQRITGQTRKRLTYAQADRAISAIAAHF 74 +NQ+ TSPTLD LF+R LAR+P+A+ALVDP+NKQRITG+ RLTYA+ADR ISA+AAHF Sbjct: 1 MNQANTSPTLDALFQRILARKPDAIALVDPINKQRITGRAPMRLTYAEADRVISALAAHF 60 Query: 75 VQSGLPANTVIAVQLPGTVEFALTVLAAHRVGLVVVPLPLLWRQAELTSVLNRTAARAIV 134 + +GLP ++VIAVQLP T+EF LTVLAAHR GLVV PLLWRQAEL + LNRT+ARAIV Sbjct: 61 IDAGLPPHSVIAVQLPNTIEFVLTVLAAHRAGLVVAVFPLLWRQAELVAALNRTSARAIV 120 Query: 135 SRGRIDGVSYADIAMNAAAEAFSIRHVCGFGPDLPEGMASLDQAILEDSRASRPMIEDGR 194 + +IDGV +AD+AM+AAAEAFSIRHVCGFG DLPEGM SLDQ+I + SR++R ++ DGR Sbjct: 121 TMSKIDGVIHADLAMHAAAEAFSIRHVCGFGNDLPEGMFSLDQSIAKPSRSTRGVMPDGR 180 Query: 195 KPALISFDVTSGGLRPVPRAHFGLIA-GLAMSLESDLAPGATIMSAFAPMSFAGICASLV 253 K A++SFDVT+ G R VPR+H LIA GLA+SLESDL G +MSAF P SFAG+ AS+V Sbjct: 181 KAAIVSFDVTADGFRAVPRSHLSLIAGGLAISLESDLPQGVNMMSAFLPSSFAGLAASVV 240 Query: 254 TWLLSGGTLVLHHPFDEDAFETQFNDHACNTLIAPAAGASCLQCALDLAAGDHDRRL 310 TWLLSGG+L LHHPFD + E Q + AC+TLIAPA Q L L D RL Sbjct: 241 TWLLSGGSLALHHPFDAEVLEQQLAELACDTLIAPA------QLVLRLDGSDLAGRL 291 >ref|YP_532481.1| putative acid-CoA ligase [Rhodopseudomonas palustris BisB18] gb|ABD88162.1| putative acid-CoA ligase [Rhodopseudomonas palustris BisB18] Length = 509 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 182/276 (65%), Positives = 219/276 (79%), Gaps = 2/276 (0%) Query: 15 VNQSITSPTLDTLFKRTLARQPEALALVDPLNKQRITGQTRKRLTYAQADRAISAIAAHF 74 +NQS SPTLD LF+R LARQP A+AL+DP NK RITGQ +RLT+AQAD+AIS++AAHF Sbjct: 1 MNQSNASPTLDGLFRRILARQPHAVALIDPDNKLRITGQPPQRLTFAQADQAISSLAAHF 60 Query: 75 VQSGLPANTVIAVQLPGTVEFALTVLAAHRVGLVVVPLPLLWRQAELTSVLNRTAARAIV 134 + +GLPAN VIAVQ+P VEF LTVLAAHR GLVV LP LWRQAELT LNRT ARAIV Sbjct: 61 IAAGLPANAVIAVQMPNCVEFFLTVLAAHRAGLVVALLPQLWRQAELTVALNRTGARAIV 120 Query: 135 SRGRIDGVSYADIAMNAAAEAFSIRHVCGFGPDLPEGMASLDQAILEDSRASRPMIEDGR 194 + RIDGVS+A++AM+AAAEAFSIRHVCGFG DLPEGMASLD A+ + + + P+ +D R Sbjct: 121 TTSRIDGVSHANLAMDAAAEAFSIRHVCGFGSDLPEGMASLDAAMTQPAEPA-PVRQDAR 179 Query: 195 KPALISFDVTSGGLRPVPRAHFGLIA-GLAMSLESDLAPGATIMSAFAPMSFAGICASLV 253 + A+ISFDVT+ G RPVPR H LIA GL +SLES L GA+I+SA P SFAG+ +SLV Sbjct: 180 RAAIISFDVTANGFRPVPRTHLNLIAGGLVLSLESRLTQGASILSAMVPSSFAGLTSSLV 239 Query: 254 TWLLSGGTLVLHHPFDEDAFETQFNDHACNTLIAPA 289 WLL+GG+L LHHPFD ++FE Q + C+ L APA Sbjct: 240 VWLLTGGSLALHHPFDAESFEQQIVELECDALSAPA 275 >ref|YP_004109157.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU44424.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 511 Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 182/277 (65%), Positives = 218/277 (78%), Gaps = 2/277 (0%) Query: 15 VNQSITSPTLDTLFKRTLARQPEALALVDPLNKQRITGQTRKRLTYAQADRAISAIAAHF 74 ++Q TSPTLD LF+RTLARQP+A+AL+DP +KQRITGQ RLTYA+ADRAISA+AAHF Sbjct: 1 MSQPNTSPTLDGLFRRTLARQPDAVALIDPPDKQRITGQQPMRLTYAEADRAISALAAHF 60 Query: 75 VQSGLPANTVIAVQLPGTVEFALTVLAAHRVGLVVVPLPLLWRQAELTSVLNRTAARAIV 134 V +GLP+N+VIAVQLP TVEF LTVLAAHR GLVV LP LWR A+LT+ LNRT ARAIV Sbjct: 61 VTAGLPSNSVIAVQLPNTVEFVLTVLAAHRAGLVVALLPQLWRHADLTAALNRTGARAIV 120 Query: 135 SRGRIDGVSYADIAMNAAAEAFSIRHVCGFGPDLPEGMASLDQAILEDSRA-SRPMIEDG 193 S IDGVS+AD+AMNAAAEAFSIRHVCGFG DLPEGMASLD A+ +DS P +++ Sbjct: 121 STRWIDGVSHADLAMNAAAEAFSIRHVCGFGDDLPEGMASLDAAMADDSALPPPPGLQEA 180 Query: 194 RKPALISFDVTSGGLRPVPRAHFGLIA-GLAMSLESDLAPGATIMSAFAPMSFAGICASL 252 R+ A+ISFD TS G+R +PR+H LIA GL + LES + GA ++SA P SFAG+ +S+ Sbjct: 181 RRAAVISFDTTSDGVRAIPRSHLHLIAGGLVVFLESAIPQGAVMLSAQTPASFAGLASSM 240 Query: 253 VTWLLSGGTLVLHHPFDEDAFETQFNDHACNTLIAPA 289 VTWLLSGGTL LHHPFD+ E Q + C L+ PA Sbjct: 241 VTWLLSGGTLALHHPFDDAVLERQIVELGCQALVTPA 277