BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0242.0015.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771228.1| hypothetical protein blr4588 [Bradyrhizobium ja...   222   1e-56
ref|ZP_08629809.1| hypothetical protein CSIRO_2904 [Bradyrhizobi...   222   1e-56
ref|YP_001205773.1| hypothetical protein BRADO3778 [Bradyrhizobi...   221   2e-56
ref|YP_001240118.1| hypothetical protein BBta_4151 [Bradyrhizobi...   220   5e-56
ref|YP_532484.1| hemimethylated DNA-binding region [Rhodopseudom...   219   1e-55

>ref|NP_771228.1| hypothetical protein blr4588 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49853.1| blr4588 [Bradyrhizobium japonicum USDA 110]
          Length = 110

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/110 (94%), Positives = 109/110 (99%)

Query: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEDMRPHKDQPFYHLLA 60
           MIKARTAKFQIGQ+VRHR+FSFRGVIFDIDPEFNNTEEWWLSIPE++RPHKDQPFYHLLA
Sbjct: 1   MIKARTAKFQIGQVVRHRIFSFRGVIFDIDPEFNNTEEWWLSIPEEVRPHKDQPFYHLLA 60

Query: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110
           EN+ESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDK GGYRPRNPSLN
Sbjct: 61  ENAESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKGGGYRPRNPSLN 110


>ref|ZP_08629809.1| hypothetical protein CSIRO_2904 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07452.1| hypothetical protein CSIRO_2904 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 110

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/110 (95%), Positives = 109/110 (99%)

Query: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEDMRPHKDQPFYHLLA 60
           MI+ARTAKFQIGQIVRHR+FSFRGVI+DIDP FNNTEEWWLSIPE+MRPHKDQPFYHLLA
Sbjct: 1   MIQARTAKFQIGQIVRHRIFSFRGVIYDIDPVFNNTEEWWLSIPEEMRPHKDQPFYHLLA 60

Query: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110
           ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN
Sbjct: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110


>ref|YP_001205773.1| hypothetical protein BRADO3778 [Bradyrhizobium sp. ORS 278]
 emb|CAL77548.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 110

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/110 (95%), Positives = 109/110 (99%)

Query: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEDMRPHKDQPFYHLLA 60
           MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPE++RPHKDQPFYHLLA
Sbjct: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEEVRPHKDQPFYHLLA 60

Query: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110
           EN+ESEYVAYVSEQNL+PDESGEPIRHSQVAEIFIKDKSGGYRPRNP LN
Sbjct: 61  ENAESEYVAYVSEQNLVPDESGEPIRHSQVAEIFIKDKSGGYRPRNPLLN 110


>ref|YP_001240118.1| hypothetical protein BBta_4151 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36212.1| hypothetical protein BBta_4151 [Bradyrhizobium sp. BTAi1]
          Length = 110

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/110 (94%), Positives = 109/110 (99%)

Query: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEDMRPHKDQPFYHLLA 60
           MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPE++RPHKDQPFYHLLA
Sbjct: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEEVRPHKDQPFYHLLA 60

Query: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110
           EN+ESEYVAYVSEQNL+PD+SGEPIRHSQVAEIFIKDKSGGYRPRNP LN
Sbjct: 61  ENAESEYVAYVSEQNLVPDDSGEPIRHSQVAEIFIKDKSGGYRPRNPLLN 110


>ref|YP_532484.1| hemimethylated DNA-binding region [Rhodopseudomonas palustris
           BisB18]
 gb|ABD88165.1| Hemimethylated DNA-binding region [Rhodopseudomonas palustris
           BisB18]
          Length = 110

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 108/110 (98%)

Query: 1   MIKARTAKFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEDMRPHKDQPFYHLLA 60
           MIK RTA+FQIGQIVRHR+FSFRGVIFDIDPEFNNTEEWWLSIPE++RPHKDQPFYHLLA
Sbjct: 1   MIKTRTARFQIGQIVRHRIFSFRGVIFDIDPEFNNTEEWWLSIPEEVRPHKDQPFYHLLA 60

Query: 61  ENSESEYVAYVSEQNLLPDESGEPIRHSQVAEIFIKDKSGGYRPRNPSLN 110
           ENS+SEYVAYVSEQNLLPDESGEPIRHSQVAEIF+KDKSG YRPRNPSLN
Sbjct: 61  ENSDSEYVAYVSEQNLLPDESGEPIRHSQVAEIFVKDKSGSYRPRNPSLN 110