BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0001.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771215.1| ribosomal protein S12 methylthiotransferase [Br... 841 0.0 ref|ZP_08629817.1| ribosomal protein S12p [Bradyrhizobiaceae bac... 833 0.0 ref|YP_532489.1| ribosomal protein S12 methylthiotransferase [Rh... 824 0.0 ref|YP_001205784.1| ribosomal protein S12 methylthiotransferase ... 824 0.0 ref|YP_001240108.1| ribosomal protein S12 methylthiotransferase ... 821 0.0 >ref|NP_771215.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium japonicum USDA 110] sp|Q89LG9.1|RIMO_BRAJA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO dbj|BAC49840.1| blr4575 [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/436 (91%), Positives = 425/436 (97%) Query: 6 APKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLAA 65 AP++SF SLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESL+A Sbjct: 4 APRISFTSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLSA 63 Query: 66 IGEAMAENGKVIVTGCMGAEPEQIESAYPGVLSITGPQQYESVLDAVHRALPPAHNPHID 125 IGEAMAENGKVIVTGCMGAEPEQIE AYPGVLSITGPQQYESVLDAVHRALPPAHNPH+D Sbjct: 64 IGEAMAENGKVIVTGCMGAEPEQIEQAYPGVLSITGPQQYESVLDAVHRALPPAHNPHLD 123 Query: 126 LVPPQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPANDVLREAEKLVKAGVK 185 LVPPQG+KLTPRHYAYLKISEGCNNRC+FCIIPKLRGDLVSRPANDVLREAE+LV AGVK Sbjct: 124 LVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPANDVLREAERLVGAGVK 183 Query: 186 ELLVISQDTSAYGVDLKYAESPWQDRGVRAKFFDLAKELGELGAWVRLQYVYPYPHVDEV 245 ELLVISQDTSAYGVDLKYAESPW+DR VRAKF DLA+ELGELGAWVRLQYVYPYPHVDEV Sbjct: 184 ELLVISQDTSAYGVDLKYAESPWKDRQVRAKFLDLARELGELGAWVRLQYVYPYPHVDEV 243 Query: 246 IGLMTEGKVLPYLDIPFQHASPDVLRAMKRPAAQEKTLARIQKWREQCPELTLRSTFIVG 305 I LMT+G VLPYLDIPFQHASP+VL+AMKRPAAQ+KTLARI++WRE+CP+L LRSTFIVG Sbjct: 244 IALMTQGTVLPYLDIPFQHASPEVLKAMKRPAAQDKTLARIKRWREECPDLALRSTFIVG 303 Query: 306 FPGETDSDFAYLLDWLDEAGIDRLGCFKYEPVAGATSNAIGNAVPDEVKQERWNALMARQ 365 FPGETD+DFAYLLDWLDEA IDRLGCFKYEPVAGATSNAI N VP+EVKQER+NALMARQ Sbjct: 304 FPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGATSNAIANPVPEEVKQERYNALMARQ 363 Query: 366 QKISARRLKRKVGTRQQVIIDEVGPTVAKGRSKADAPEIDGAVYLTSRRPLKIGEIVTAK 425 QKISARRLKRKVGTRQQ+IIDEVGPTVA+GRSKADAPEIDGAVYL+SRRPL++GEIVTAK Sbjct: 364 QKISARRLKRKVGTRQQIIIDEVGPTVARGRSKADAPEIDGAVYLSSRRPLRVGEIVTAK 423 Query: 426 IERSDQYDLHGSVAGF 441 IER+DQYDLHGSVAGF Sbjct: 424 IERADQYDLHGSVAGF 439 >ref|ZP_08629817.1| ribosomal protein S12p [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07460.1| ribosomal protein S12p [Bradyrhizobiaceae bacterium SG-6C] Length = 441 Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/441 (89%), Positives = 422/441 (95%) Query: 1 MQEAAAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQ 60 M++ APKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGAD+VIVNTCGFLDSAKQ Sbjct: 1 MEQGVAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAKQ 60 Query: 61 ESLAAIGEAMAENGKVIVTGCMGAEPEQIESAYPGVLSITGPQQYESVLDAVHRALPPAH 120 ESL AIGEAMAENGKVIVTGCMGAEPEQIE AYP VLSITGPQQYESVLDAVHRALPP H Sbjct: 61 ESLGAIGEAMAENGKVIVTGCMGAEPEQIEKAYPNVLSITGPQQYESVLDAVHRALPPLH 120 Query: 121 NPHIDLVPPQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPANDVLREAEKLV 180 NPHIDLVPPQG+KLTPRHYAYLKISEGCNNRC+FCIIPKLRGDLVSRPANDVLREAEKLV Sbjct: 121 NPHIDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPANDVLREAEKLV 180 Query: 181 KAGVKELLVISQDTSAYGVDLKYAESPWQDRGVRAKFFDLAKELGELGAWVRLQYVYPYP 240 AGVKELLV+SQDTSAYG+DLKYA S W+DR VRAKF+DL+KELGELGAWVRLQYVYPYP Sbjct: 181 AAGVKELLVVSQDTSAYGIDLKYATSLWKDREVRAKFYDLSKELGELGAWVRLQYVYPYP 240 Query: 241 HVDEVIGLMTEGKVLPYLDIPFQHASPDVLRAMKRPAAQEKTLARIQKWREQCPELTLRS 300 HVDEVIGLMTEGKVLPYLDIPFQHASPDVL+ M+RPA+Q+KTL RI+KWRE+CP+LTLRS Sbjct: 241 HVDEVIGLMTEGKVLPYLDIPFQHASPDVLKQMRRPASQDKTLGRIKKWREECPDLTLRS 300 Query: 301 TFIVGFPGETDSDFAYLLDWLDEAGIDRLGCFKYEPVAGATSNAIGNAVPDEVKQERWNA 360 TFIVGFPGETDSDF YLLDWLDEA IDRLGCFKYEPVAGATSN I N VPDE+K RWNA Sbjct: 301 TFIVGFPGETDSDFQYLLDWLDEAQIDRLGCFKYEPVAGATSNTIENPVPDEIKTARWNA 360 Query: 361 LMARQQKISARRLKRKVGTRQQVIIDEVGPTVAKGRSKADAPEIDGAVYLTSRRPLKIGE 420 LMARQQKISA+RLKRKVGTRQQ+IIDEVGPTV+KGRSKADAP+IDG+VY++SRRPLK+GE Sbjct: 361 LMARQQKISAQRLKRKVGTRQQIIIDEVGPTVSKGRSKADAPQIDGSVYVSSRRPLKVGE 420 Query: 421 IVTAKIERSDQYDLHGSVAGF 441 IVTAKI+R+DQYDLHG+VAGF Sbjct: 421 IVTAKIDRADQYDLHGTVAGF 441 >ref|YP_532489.1| ribosomal protein S12 methylthiotransferase [Rhodopseudomonas palustris BisB18] sp|Q214L6.1|RIMO_RHOPB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gb|ABD88170.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 441 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/441 (89%), Positives = 421/441 (95%) Query: 1 MQEAAAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQ 60 M +AAAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGAD+VIVNTCGFLDSAK+ Sbjct: 1 MNQAAAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADLVIVNTCGFLDSAKK 60 Query: 61 ESLAAIGEAMAENGKVIVTGCMGAEPEQIESAYPGVLSITGPQQYESVLDAVHRALPPAH 120 ESL AIGEAMA NGKVIVTGCMGAEPEQIE+AYP +LSITGPQQYESVLDAVHRALPP H Sbjct: 61 ESLGAIGEAMAANGKVIVTGCMGAEPEQIEAAYPNLLSITGPQQYESVLDAVHRALPPLH 120 Query: 121 NPHIDLVPPQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPANDVLREAEKLV 180 NPH+DLVP QG+KLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPA +VLREAEKLV Sbjct: 121 NPHLDLVPAQGIKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPAGEVLREAEKLV 180 Query: 181 KAGVKELLVISQDTSAYGVDLKYAESPWQDRGVRAKFFDLAKELGELGAWVRLQYVYPYP 240 KAGVKELLV+SQDTSAYGVDLKYAESPWQDR VRA+F+DLAKELGELGAWVRLQYVYPYP Sbjct: 181 KAGVKELLVVSQDTSAYGVDLKYAESPWQDRNVRARFYDLAKELGELGAWVRLQYVYPYP 240 Query: 241 HVDEVIGLMTEGKVLPYLDIPFQHASPDVLRAMKRPAAQEKTLARIQKWREQCPELTLRS 300 HVDEVIGLM +GKVLPYLDIPFQHASP+VL+ MKRPAAQ+KTLARI++WRE CPELTLRS Sbjct: 241 HVDEVIGLMAQGKVLPYLDIPFQHASPEVLKQMKRPAAQDKTLARIKQWREICPELTLRS 300 Query: 301 TFIVGFPGETDSDFAYLLDWLDEAGIDRLGCFKYEPVAGATSNAIGNAVPDEVKQERWNA 360 TFIVGFPGETDSDFAYLLDWL++A IDR+G FKYE V GATSNA+ + V DEVK ERWNA Sbjct: 301 TFIVGFPGETDSDFAYLLDWLEQAEIDRVGAFKYEAVRGATSNALPDQVSDEVKTERWNA 360 Query: 361 LMARQQKISARRLKRKVGTRQQVIIDEVGPTVAKGRSKADAPEIDGAVYLTSRRPLKIGE 420 LMARQQKISARRLKRKVGTRQQVIIDEVGPTV+KGRSKADAP+IDG+VYLTSRRPL++GE Sbjct: 361 LMARQQKISARRLKRKVGTRQQVIIDEVGPTVSKGRSKADAPQIDGSVYLTSRRPLRVGE 420 Query: 421 IVTAKIERSDQYDLHGSVAGF 441 IVTAKIER+D YDLHGSVAGF Sbjct: 421 IVTAKIERADAYDLHGSVAGF 441 >ref|YP_001205784.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp. ORS 278] sp|A4YUI3.1|RIMO_BRASO RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO emb|CAL77559.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 445 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/437 (89%), Positives = 417/437 (95%) Query: 5 AAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQESLA 64 +APK+SFVSLGCPKALVDSERIITRLRAEGYELARKHDGAD+VIVNTCGFLDSAKQESLA Sbjct: 9 SAPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAKQESLA 68 Query: 65 AIGEAMAENGKVIVTGCMGAEPEQIESAYPGVLSITGPQQYESVLDAVHRALPPAHNPHI 124 AIG AMAENGKVIVTGCMGAEPEQIE AYPGVLSITGPQQYESVLDAVHRA PP HNPH+ Sbjct: 69 AIGSAMAENGKVIVTGCMGAEPEQIEQAYPGVLSITGPQQYESVLDAVHRASPPVHNPHL 128 Query: 125 DLVPPQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPANDVLREAEKLVKAGV 184 DLVPPQG+KLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPA DVLREAE+LV AGV Sbjct: 129 DLVPPQGIKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPAADVLREAERLVAAGV 188 Query: 185 KELLVISQDTSAYGVDLKYAESPWQDRGVRAKFFDLAKELGELGAWVRLQYVYPYPHVDE 244 KELLVISQDTSAYG+D+KYAESPW+DR VRA+F DLA+ELGELGAWVRL YVYPYPHVDE Sbjct: 189 KELLVISQDTSAYGLDIKYAESPWKDRSVRARFLDLARELGELGAWVRLHYVYPYPHVDE 248 Query: 245 VIGLMTEGKVLPYLDIPFQHASPDVLRAMKRPAAQEKTLARIQKWREQCPELTLRSTFIV 304 VIGLMT+GKVLPYLDIPFQHASP+VL+AM+RPAAQ+KTL RI+ WR CP+L LRSTFIV Sbjct: 249 VIGLMTDGKVLPYLDIPFQHASPNVLKAMRRPAAQDKTLDRIKAWRGACPDLALRSTFIV 308 Query: 305 GFPGETDSDFAYLLDWLDEAGIDRLGCFKYEPVAGATSNAIGNAVPDEVKQERWNALMAR 364 GFPGETD DFAYLLDWLDEA IDRLGCFKYEPVAGATSNA+ VPDEVKQERWNALMAR Sbjct: 309 GFPGETDEDFAYLLDWLDEAEIDRLGCFKYEPVAGATSNALPGQVPDEVKQERWNALMAR 368 Query: 365 QQKISARRLKRKVGTRQQVIIDEVGPTVAKGRSKADAPEIDGAVYLTSRRPLKIGEIVTA 424 QQKISARRLKRKVGTRQQ+IIDEVGPTVAKGRSKADAPEIDGAVYL+SRRPL+ GEIVTA Sbjct: 369 QQKISARRLKRKVGTRQQIIIDEVGPTVAKGRSKADAPEIDGAVYLSSRRPLRAGEIVTA 428 Query: 425 KIERSDQYDLHGSVAGF 441 KIER+D+YDLHG+VAGF Sbjct: 429 KIERADEYDLHGTVAGF 445 >ref|YP_001240108.1| ribosomal protein S12 methylthiotransferase [Bradyrhizobium sp. BTAi1] sp|A5EJ58.1|RIMO_BRASB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gb|ABQ36202.1| SSU ribosomal protein S12P methylthiotransferase [Bradyrhizobium sp. BTAi1] Length = 441 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/441 (87%), Positives = 421/441 (95%) Query: 1 MQEAAAPKVSFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQ 60 MQ+ +APK+SFVSLGCPKALVDSERIITRLRAEGYELARKHDGAD+VIVNTCGFLDSAKQ Sbjct: 1 MQQGSAPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADVVIVNTCGFLDSAKQ 60 Query: 61 ESLAAIGEAMAENGKVIVTGCMGAEPEQIESAYPGVLSITGPQQYESVLDAVHRALPPAH 120 ESL+AIG AMAENGKVIVTGCMGAEPEQIE AYPGVLSITGPQQYESVL+AVHRA PP H Sbjct: 61 ESLSAIGSAMAENGKVIVTGCMGAEPEQIEQAYPGVLSITGPQQYESVLEAVHRASPPIH 120 Query: 121 NPHIDLVPPQGVKLTPRHYAYLKISEGCNNRCSFCIIPKLRGDLVSRPANDVLREAEKLV 180 NPH+DLVPPQG+KLTPRHYAYLKISEGCNNRC+FCIIPKLRGDLVSRPA DVLREAE+LV Sbjct: 121 NPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPAADVLREAERLV 180 Query: 181 KAGVKELLVISQDTSAYGVDLKYAESPWQDRGVRAKFFDLAKELGELGAWVRLQYVYPYP 240 AGVKELLVISQDTSAYG+DLKYAES W+DR VRA+F DLA+ELGELGAWVRL YVYPYP Sbjct: 181 AAGVKELLVISQDTSAYGLDLKYAESSWKDRSVRARFLDLARELGELGAWVRLHYVYPYP 240 Query: 241 HVDEVIGLMTEGKVLPYLDIPFQHASPDVLRAMKRPAAQEKTLARIQKWREQCPELTLRS 300 HVDEV+GLM EG+VLPYLDIPFQHASP+VL+AM+RPAAQ+KTL RI+ WR CP+L LRS Sbjct: 241 HVDEVVGLMAEGRVLPYLDIPFQHASPNVLKAMRRPAAQDKTLDRIKSWRAACPDLALRS 300 Query: 301 TFIVGFPGETDSDFAYLLDWLDEAGIDRLGCFKYEPVAGATSNAIGNAVPDEVKQERWNA 360 TFIVGFPGETD+DFAYLLDWLDEA IDRLGCFKYEPVAGATSNA+ + VPDEVKQERWNA Sbjct: 301 TFIVGFPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGATSNALPDQVPDEVKQERWNA 360 Query: 361 LMARQQKISARRLKRKVGTRQQVIIDEVGPTVAKGRSKADAPEIDGAVYLTSRRPLKIGE 420 LMARQQKISARRLKRKVGTRQQ+IIDEVGPTVAKGRSKADAPEIDG+VY++SRRPL++GE Sbjct: 361 LMARQQKISARRLKRKVGTRQQIIIDEVGPTVAKGRSKADAPEIDGSVYVSSRRPLRVGE 420 Query: 421 IVTAKIERSDQYDLHGSVAGF 441 IVTA+IER+D+YDLHG+VAGF Sbjct: 421 IVTARIERADEYDLHGTVAGF 441