BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0083.p (504 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00054995.1| COG1961: Site-specific recombinases, DNA inve... 654 0.0 ref|ZP_08862685.1| recombinase [Ruegeria sp. TW15] 653 0.0 ref|ZP_01749681.1| Site-specific recombinase [Roseobacter sp. CC... 651 0.0 ref|YP_420560.1| site-specific recombinase [Magnetospirillum mag... 644 0.0 ref|YP_001355150.1| recombinase [Janthinobacterium sp. Marseille... 636 e-180 >ref|ZP_00054995.1| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Magnetospirillum magnetotacticum MS-1] Length = 519 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/489 (64%), Positives = 385/489 (78%) Query: 1 MSTDHQQYSTANQSQAIREYAARHGFRIEKTYEDSGKSGLNLDDRDALKRLIEEVQNGTA 60 MST+HQ+YST NQ+ I +YAAR G I +TY D GKSGL++D RDALK LI +V+ G Sbjct: 31 MSTEHQRYSTENQADIIAQYAARRGIAIVRTYADEGKSGLSIDGRDALKLLIHDVEAGNT 90 Query: 61 EFSTILVYDVSRWGRFQDADESAYYEYICKRAGISVRYCAEQFENDGSPVSTIVKGVKRA 120 +F+TILVYD+SRWGRFQDADESAYYE++CKRAGI+V++CAEQFENDGS +TI+KG+KRA Sbjct: 91 DFTTILVYDISRWGRFQDADESAYYEHVCKRAGITVQFCAEQFENDGSLSATIIKGMKRA 150 Query: 121 MAGEYSRELSVKVFAGQRRLIELGYRQGGPAGYGLRRQLIDVNGSVKAELIRGEHKSIQT 180 MAGEYSRELSVKVF GQ RLIELGYRQGG AG+GLRR L+D GS K L RGEHKS+QT Sbjct: 151 MAGEYSRELSVKVFTGQCRLIELGYRQGGAAGFGLRRMLLDERGSPKGILTRGEHKSLQT 210 Query: 181 DRIVLVPGPDDEIDTIRFIYDAFVGQGKSEAEIAERLNGKGIVTDLGRPWSRALVHQILI 240 DR+VLVPGP DE++ ++ IY FV K+E EIA LN +G+ TD GRPW+R +HQ+L Sbjct: 211 DRVVLVPGPPDEVEIVQRIYSMFVDGKKTEGEIAAILNAEGLSTDYGRPWTRGTIHQVLS 270 Query: 241 NEKYIGNNVWNKCSCKLKGRRIYNPPERWVRHDQAFEPIVDEDRFRAAQHIICERCKRYS 300 NEKY+GNNV+N+ S KLK +R++N + W+R D AF IV + FR A II R RYS Sbjct: 271 NEKYVGNNVFNRMSFKLKKKRVHNGADIWIRRDGAFPAIVPIEMFRTAGDIIVARSVRYS 330 Query: 301 DEELLDVLRGLLEQHGYLSGMIIDELECGPSSSAYRTRFGSLIRAYELIGFTPDRDFRYI 360 D E+LD L GLL G LSG+IIDE++ PSSSAYR+RFGSL+RAY+L+G+ P RD+RY+ Sbjct: 331 DGEMLDRLAGLLADRGELSGLIIDEMDGMPSSSAYRSRFGSLLRAYQLVGYAPGRDYRYV 390 Query: 361 EINRALRRMYPDLIMIAIRGIQEIGGLVRQDLFTDLLTVNDEFTASLCLVRAQETMAGSF 420 EINR LRRM+PD++ AI I+++GG VR+DL TDLL +N EFTAS+ +VR QET AG+ Sbjct: 391 EINRFLRRMHPDIVERAITAIEDLGGTVRRDLETDLLAINGEFTASIVIVRCQETQAGAL 450 Query: 421 RWKVRFDAGLRPDITVAIRMNQMNSAILDYYLLPRFEMESARLALAENNGIALDAYRFDS 480 RWK+RFDAGLRPDITVAIRM N ILDYYLLPR EM A L L E+NGI LDA+RFD+ Sbjct: 451 RWKIRFDAGLRPDITVAIRMAAGNQEILDYYLLPRTEMMGADLRLKEDNGIFLDAFRFDT 510 Query: 481 LDMLFELAA 489 LD F+L A Sbjct: 511 LDRFFKLTA 519 >ref|ZP_08862685.1| recombinase [Ruegeria sp. TW15] Length = 497 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/497 (63%), Positives = 383/497 (77%) Query: 1 MSTDHQQYSTANQSQAIREYAARHGFRIEKTYEDSGKSGLNLDDRDALKRLIEEVQNGTA 60 MST+HQ+YST NQS AI YA + G I +TY D GKSGL + RD LK+LI+++Q+G A Sbjct: 1 MSTEHQRYSTENQSDAIAHYAEQRGIEIVRTYSDEGKSGLRIQGRDGLKQLIDDIQSGKA 60 Query: 61 EFSTILVYDVSRWGRFQDADESAYYEYICKRAGISVRYCAEQFENDGSPVSTIVKGVKRA 120 F +LVYD+SRWGRFQDADESAYYEYICKRAGISV YCAEQFENDGSPVSTIVKGVKRA Sbjct: 61 NFEAVLVYDISRWGRFQDADESAYYEYICKRAGISVIYCAEQFENDGSPVSTIVKGVKRA 120 Query: 121 MAGEYSRELSVKVFAGQRRLIELGYRQGGPAGYGLRRQLIDVNGSVKAELIRGEHKSIQT 180 MAGEYSRELS KVF GQ RLIELGYRQGGP G+GLRR LID +G K L RGEHKSIQT Sbjct: 121 MAGEYSRELSQKVFTGQCRLIELGYRQGGPPGFGLRRMLIDEHGITKGILERGEHKSIQT 180 Query: 181 DRIVLVPGPDDEIDTIRFIYDAFVGQGKSEAEIAERLNGKGIVTDLGRPWSRALVHQILI 240 DR+ LVPGP +EI ++ I+ AFV KSE EIAE LN +GI+TDL R W+R VHQILI Sbjct: 181 DRVTLVPGPAEEIAIVKEIFQAFVEDLKSETEIAESLNARGILTDLERAWTRGTVHQILI 240 Query: 241 NEKYIGNNVWNKCSCKLKGRRIYNPPERWVRHDQAFEPIVDEDRFRAAQHIICERCKRYS 300 NEKYIGNNVWN+ S KLK RR+ N P+ WVR + AFE IVD D F AA II R + + Sbjct: 241 NEKYIGNNVWNRNSFKLKKRRVQNDPKIWVRAEGAFEGIVDPDLFAAANAIISARSSKLT 300 Query: 301 DEELLDVLRGLLEQHGYLSGMIIDELECGPSSSAYRTRFGSLIRAYELIGFTPDRDFRYI 360 D+E+L+ L+ + E G+LSG++IDE E PSSSAYR+RFGSL+RAY L+GF PDRD+RYI Sbjct: 301 DDEMLEGLKEVFEAEGFLSGLVIDEAEALPSSSAYRSRFGSLLRAYRLVGFKPDRDYRYI 360 Query: 361 EINRALRRMYPDLIMIAIRGIQEIGGLVRQDLFTDLLTVNDEFTASLCLVRAQETMAGSF 420 EINR LR ++PD++ I GI+ GG V + TDLLT+N EFTASL +VR ET AGS Sbjct: 361 EINRRLRELHPDIVGETIAGIEASGGSVERHPKTDLLTINGEFTASLVIVRCSETNAGSL 420 Query: 421 RWKVRFDAGLRPDITVAIRMNQMNSAILDYYLLPRFEMESARLALAENNGIALDAYRFDS 480 RW +RFD L+PDIT+A+RM++ N LDYYLLP +M R+ LAE+NG++LDAYRF++ Sbjct: 421 RWNIRFDMSLKPDITIAVRMDRPNQRPLDYYLLPSLDMTLPRIRLAEHNGLSLDAYRFET 480 Query: 481 LDMLFELAARSQLMEVS 497 LD LF++A + EV+ Sbjct: 481 LDPLFDMAVHVPVPEVA 497 >ref|ZP_01749681.1| Site-specific recombinase [Roseobacter sp. CCS2] gb|EBA13664.1| Site-specific recombinase [Roseobacter sp. CCS2] Length = 497 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/497 (61%), Positives = 384/497 (77%) Query: 1 MSTDHQQYSTANQSQAIREYAARHGFRIEKTYEDSGKSGLNLDDRDALKRLIEEVQNGTA 60 MST+HQ+YST NQS AI YA + G+RI KTY D+GKSGL ++ RD L +L+ ++Q G Sbjct: 1 MSTEHQRYSTENQSDAISIYAEQRGYRIVKTYSDAGKSGLRIEGRDGLTQLLNDIQAGKT 60 Query: 61 EFSTILVYDVSRWGRFQDADESAYYEYICKRAGISVRYCAEQFENDGSPVSTIVKGVKRA 120 +F+T+LVYD+SRWGRFQDADE AYYE++CKRAGISV YCAEQFENDG+PVSTIVKGVKRA Sbjct: 61 DFNTVLVYDISRWGRFQDADEGAYYEFVCKRAGISVEYCAEQFENDGTPVSTIVKGVKRA 120 Query: 121 MAGEYSRELSVKVFAGQRRLIELGYRQGGPAGYGLRRQLIDVNGSVKAELIRGEHKSIQT 180 MAGEYSRELS KVFAGQ RLIE+GYRQGGP GYGLRR LID G+ K L+RGEHKSIQT Sbjct: 121 MAGEYSRELSQKVFAGQSRLIEMGYRQGGPPGYGLRRMLIDETGNQKGILVRGEHKSIQT 180 Query: 181 DRIVLVPGPDDEIDTIRFIYDAFVGQGKSEAEIAERLNGKGIVTDLGRPWSRALVHQILI 240 DR+ LVPGPDDEI + I+ FV +SEA IA LN KGI TDL R W+ A+V Q+L Sbjct: 181 DRVTLVPGPDDEIAIVNQIFRNFVDDNQSEAMIAADLNSKGIKTDLDRDWTPAVVRQLLS 240 Query: 241 NEKYIGNNVWNKCSCKLKGRRIYNPPERWVRHDQAFEPIVDEDRFRAAQHIICERCKRYS 300 NEKYIGNN+WN+ S KLK R ++N P+ WVR + AFE IVD F AA+ I + +RYS Sbjct: 241 NEKYIGNNIWNRSSFKLKKRHVHNSPDSWVRSEGAFEAIVDAGLFAAAKAIFATKAQRYS 300 Query: 301 DEELLDVLRGLLEQHGYLSGMIIDELECGPSSSAYRTRFGSLIRAYELIGFTPDRDFRYI 360 DEE+LD LR LE HG+LSG++I+E PSS AY++RFGSL+RAY+L+GFTPDRD+RYI Sbjct: 301 DEEMLDGLRDALEMHGFLSGIVINEASALPSSGAYQSRFGSLLRAYKLVGFTPDRDYRYI 360 Query: 361 EINRALRRMYPDLIMIAIRGIQEIGGLVRQDLFTDLLTVNDEFTASLCLVRAQETMAGSF 420 EIN+ LR+M+ ++I + GI+++GGLV+ T LLT+NDEF+AS+ + R +T AG++ Sbjct: 361 EINKRLRKMHAEIIHETVGGIEQVGGLVKHGTKTSLLTMNDEFSASVVIARCTQTGAGAY 420 Query: 421 RWKVRFDAGLRPDITVAIRMNQMNSAILDYYLLPRFEMESARLALAENNGIALDAYRFDS 480 RW +R D GL PDITV +RM+Q N LDYYLLP +M ++L L+E+NG++LDAYR D Sbjct: 421 RWNIRLDTGLLPDITVVVRMDQANETPLDYYLLPTVDMTRSKLRLSESNGLSLDAYRLDD 480 Query: 481 LDMLFELAARSQLMEVS 497 L F + R+ ++EV+ Sbjct: 481 LTKFFTMCERTSVLEVA 497 >ref|YP_420560.1| site-specific recombinase [Magnetospirillum magneticum AMB-1] dbj|BAE50001.1| Site-specific recombinase [Magnetospirillum magneticum AMB-1] Length = 524 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/497 (64%), Positives = 389/497 (78%) Query: 1 MSTDHQQYSTANQSQAIREYAARHGFRIEKTYEDSGKSGLNLDDRDALKRLIEEVQNGTA 60 MST+HQQYST NQ+ AIR+YA HGF I +TY D GKSGL LD R AL+ L+++VQ+G A Sbjct: 28 MSTEHQQYSTENQADAIRQYADDHGFEIVRTYRDDGKSGLRLDGRKALQNLLDDVQSGRA 87 Query: 61 EFSTILVYDVSRWGRFQDADESAYYEYICKRAGISVRYCAEQFENDGSPVSTIVKGVKRA 120 +FS +LVYDVSRWGRFQ+ DE AYYE C AGI+V YCAEQF+NDGSP S I+K +KR Sbjct: 88 DFSIVLVYDVSRWGRFQNPDEGAYYELCCDLAGIAVHYCAEQFDNDGSPFSHIIKALKRT 147 Query: 121 MAGEYSRELSVKVFAGQRRLIELGYRQGGPAGYGLRRQLIDVNGSVKAELIRGEHKSIQT 180 MAGEY RELSVKVF GQRRLI LGYRQGGPAG+GLRRQLID G+ K L RGE KSIQT Sbjct: 148 MAGEYCRELSVKVFTGQRRLITLGYRQGGPAGFGLRRQLIDHTGTQKNVLDRGEQKSIQT 207 Query: 181 DRIVLVPGPDDEIDTIRFIYDAFVGQGKSEAEIAERLNGKGIVTDLGRPWSRALVHQILI 240 DR++L+PGP +EI+ +R IY AFV GKSE EIA LNG+GI TDLGRPW+R VHQ+LI Sbjct: 208 DRVILIPGPPEEIEVVRSIYRAFVVDGKSEREIALALNGRGIATDLGRPWTRGTVHQVLI 267 Query: 241 NEKYIGNNVWNKCSCKLKGRRIYNPPERWVRHDQAFEPIVDEDRFRAAQHIICERCKRYS 300 NEKYIGNNVWN+ S KLK +R+ N P+ WVR D F PI+D F AAQ II R +R S Sbjct: 268 NEKYIGNNVWNRRSFKLKKKRVENAPDDWVRADAVFSPIIDHALFDAAQTIIRGRSQRLS 327 Query: 301 DEELLDVLRGLLEQHGYLSGMIIDELECGPSSSAYRTRFGSLIRAYELIGFTPDRDFRYI 360 EE+L++LR LLE+ G+LSG++IDE + PSSSAY++RFGSL+RAYEL+GFTPDRD+RYI Sbjct: 328 SEEMLELLRELLERRGFLSGIMIDEADHCPSSSAYQSRFGSLLRAYELVGFTPDRDYRYI 387 Query: 361 EINRALRRMYPDLIMIAIRGIQEIGGLVRQDLFTDLLTVNDEFTASLCLVRAQETMAGSF 420 EINR LRRM+P ++ + GI++ GG V QD TDLLT+N EFTASL +VR QET AGS Sbjct: 388 EINRLLRRMHPQVLADTVAGIEQTGGRVEQDPVTDLLTINREFTASLVIVRCQETPAGSL 447 Query: 421 RWKVRFDAGLRPDITVAIRMNQMNSAILDYYLLPRFEMESARLALAENNGIALDAYRFDS 480 RW +R D GL PDIT+A+RM+ N+ DYYLLP +M RL L E+NGIALD++RFD+ Sbjct: 448 RWHIRLDTGLCPDITIAVRMDPANAQARDYYLLPNRDMTGPRLRLGEHNGIALDSFRFDT 507 Query: 481 LDMLFELAARSQLMEVS 497 L+ LF +AAR L+EV+ Sbjct: 508 LEPLFGMAARIGLLEVA 524 >ref|YP_001355150.1| recombinase [Janthinobacterium sp. Marseille] gb|ABR90458.1| recombinase [Janthinobacterium sp. Marseille] Length = 521 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 307/497 (61%), Positives = 384/497 (77%) Query: 1 MSTDHQQYSTANQSQAIREYAARHGFRIEKTYEDSGKSGLNLDDRDALKRLIEEVQNGTA 60 MST+HQQYST NQ+ IREYAA G I +TY D+GKSGL +D R +L++LI++V++GTA Sbjct: 25 MSTEHQQYSTENQADKIREYAAHRGIEIVRTYTDAGKSGLRIDGRTSLQQLIKDVESGTA 84 Query: 61 EFSTILVYDVSRWGRFQDADESAYYEYICKRAGISVRYCAEQFENDGSPVSTIVKGVKRA 120 +F+ ILVYDVSRWGRFQDADESAYYEY C+RAGI V YCAEQFENDGSPVSTIVKGVKRA Sbjct: 85 DFTIILVYDVSRWGRFQDADESAYYEYRCRRAGIQVAYCAEQFENDGSPVSTIVKGVKRA 144 Query: 121 MAGEYSRELSVKVFAGQRRLIELGYRQGGPAGYGLRRQLIDVNGSVKAELIRGEHKSIQT 180 MAGEYSRELS KVFAGQ RLIELGYRQGGPAGYGLRR LID NGS+K EL RGEHKS+QT Sbjct: 145 MAGEYSRELSAKVFAGQCRLIELGYRQGGPAGYGLRRVLIDQNGSIKTELRRGEHKSLQT 204 Query: 181 DRIVLVPGPDDEIDTIRFIYDAFVGQGKSEAEIAERLNGKGIVTDLGRPWSRALVHQILI 240 DR++L+PGP++EI + IY F+ G E+EIA RLNG ++TDL R W+RA VHQ+LI Sbjct: 205 DRVILMPGPEEEIRIVSQIYRWFIDDGLVESEIAVRLNGMNMLTDLDRAWTRATVHQVLI 264 Query: 241 NEKYIGNNVWNKCSCKLKGRRIYNPPERWVRHDQAFEPIVDEDRFRAAQHIICERCKRYS 300 NEKY+GNNV+N+ S KLK R+ N P+ W++ D AFEPIV D F AQ II R +RY+ Sbjct: 265 NEKYVGNNVYNRISFKLKKLRVINTPDMWIKKDGAFEPIVPPDIFYTAQGIIRARTRRYT 324 Query: 301 DEELLDVLRGLLEQHGYLSGMIIDELECGPSSSAYRTRFGSLIRAYELIGFTPDRDFRYI 360 +EEL+D LR L ++ G LSG+II+E + PSSS Y RFGSL++AY+++GFTPDRD+RY+ Sbjct: 325 NEELVDRLRSLYKKRGLLSGLIINETDGMPSSSVYAFRFGSLVKAYQMVGFTPDRDYRYL 384 Query: 361 EINRALRRMYPDLIMIAIRGIQEIGGLVRQDLFTDLLTVNDEFTASLCLVRAQETMAGSF 420 E+NR LR ++P ++ + I E+GGLV +D TD+L VN EF SL L R Q +G Sbjct: 385 EVNRFLRSLHPGIVAQTEQQIAELGGLVVRDPGTDILWVNGEFNVSLVLARCQTHDSGRH 444 Query: 421 RWKVRFDAGLRPDITVAIRMNQMNSAILDYYLLPRFEMESARLALAENNGIALDAYRFDS 480 WK+R D L PDITVA+R++ N + LDYYLLPR + RL+LAE N + L++YRFD+ Sbjct: 445 HWKIRLDTSLLPDITVAVRLDHDNQSALDYYLLPRLDFGQPRLSLAEQNAVELESYRFDT 504 Query: 481 LDMLFELAARSQLMEVS 497 LD LF +A R++L V+ Sbjct: 505 LDYLFGMAERTRLRRVA 521