BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0080.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_263011.1| transcriptional repressor PhlF [Pseudomonas flu... 111 5e-23 gb|AEB62066.1| putative transcriptional regulator (TetR/AcrR fam... 111 5e-23 gb|AAF20928.1|AF207529_2 PhlF [Pseudomonas fluorescens] 111 6e-23 ref|YP_001307880.1| TetR family transcriptional regulator [Clost... 110 8e-23 ref|YP_003919081.1| TetR family transcriptional regulator [Bacil... 110 1e-22 >ref|YP_263011.1| transcriptional repressor PhlF [Pseudomonas fluorescens Pf-5] gb|AAY95143.1| transcriptional repressor PhlF [Pseudomonas fluorescens Pf-5] gb|AEB78105.1| PhlF [Pseudomonas sp. K94.41] gb|AEB78108.1| PhlF [Pseudomonas protegens] gb|AEB78114.1| PhlF [Pseudomonas sp. S8-62] dbj|BAK39612.1| TerR family regulatory protein [Pseudomonas sp. YGJ3] Length = 200 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 3/171 (1%) Query: 4 RTPARA--GRPRDENVHRAILDAARDLISEAGYVAFSIEGVAARAGVAKQSIYRRWSSKG 61 RTP+R+ G R + H+AIL + +++ E GY SIE VA RAG +K +IYR W++K Sbjct: 3 RTPSRSSIGSLRSPHTHKAILTSTIEILKECGYSGLSIESVARRAGASKPTIYRWWTNKA 62 Query: 62 ALLVDLYMDGLELPGSSVSQG-FKDDLLALLLQTTKRVQDPAFANILKSVMVEAQAEPEM 120 AL+ ++Y + E G FK DL LL K ++ + V+ EAQ +P Sbjct: 63 ALIAEVYENESEQVRKFPDLGSFKADLDFLLRNLWKVWRETICGEAFRCVIAEAQLDPAT 122 Query: 121 RELVLLKIVEPRREAARHVIERGIQSGEVPEEVDVEMMLDFVFGAVWFNLL 171 + + +E RRE + ++E I +GE+P++ + E++LD +FG W+ LL Sbjct: 123 LTQLKDQFMERRREMPKKLVENAISNGELPKDTNRELLLDMIFGFCWYRLL 173 >gb|AEB62066.1| putative transcriptional regulator (TetR/AcrR family) [Bacillus amyloliquefaciens LL3] Length = 195 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 12/186 (6%) Query: 7 ARAGRPRDENVHRAILDAARDLISEAGYVAFSIEGVAARAGVAKQSIYRRWSSKGALLVD 66 ++ GRPRDE H+AIL AA DL+ E G+ A +++ +A RA V+K +IY+ WS+K A+++D Sbjct: 6 SKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKVSKATIYKWWSNKAAVIMD 65 Query: 67 LYM----DGLELP--GSSVSQGFKDDLLALLLQTTKRVQDPAFANILKSVMVEAQAEPEM 120 ++ D L +P GS+V D+L T R ++K ++ Q + ++ Sbjct: 66 SFLSTATDRLPVPDTGSTVQ-----DILT-HATTLARFLTSREGTVIKELIGAGQLDAKL 119 Query: 121 RELVLLKIVEPRREAARHVIERGIQSGEVPEEVDVEMMLDFVFGAVWFNLLFGASGLTNK 180 E + +PRR A+ ++E+GIQ GE+ E +D+E+ +D ++G +++ LL + + Sbjct: 120 AEEYRTRFFQPRRLQAKGLLEKGIQQGELRENLDIEVSIDLIYGPIFYRLLITGDEVNDS 179 Query: 181 FAHRAV 186 + H V Sbjct: 180 YVHDLV 185 >gb|AAF20928.1|AF207529_2 PhlF [Pseudomonas fluorescens] Length = 200 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 3/171 (1%) Query: 4 RTPARA--GRPRDENVHRAILDAARDLISEAGYVAFSIEGVAARAGVAKQSIYRRWSSKG 61 RTP+R+ G R + H+AIL + +++ E GY SIE VA RAG +K +IYR W++K Sbjct: 3 RTPSRSSIGSLRSPHTHKAILTSTIEILKECGYSGLSIESVARRAGASKPTIYRWWTNKA 62 Query: 62 ALLVDLYMDGLELPGSSVSQG-FKDDLLALLLQTTKRVQDPAFANILKSVMVEAQAEPEM 120 AL+ ++Y + E G FK DL LL K ++ + V+ EAQ +P Sbjct: 63 ALIAEVYENESEQVRKFPDLGSFKADLDFLLRNLWKVWRETICGEAFRCVIAEAQLDPAT 122 Query: 121 RELVLLKIVEPRREAARHVIERGIQSGEVPEEVDVEMMLDFVFGAVWFNLL 171 + + +E RRE + ++E I +GE+P++ + E++LD +FG W+ LL Sbjct: 123 LTQLKDQFMERRREMPKKLVENAISNGELPKDTNRELLLDMIFGFCWYRLL 173 >ref|YP_001307880.1| TetR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gb|ABR32924.1| transcriptional regulator, TetR family [Clostridium beijerinckii NCIMB 8052] Length = 192 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 24/191 (12%) Query: 8 RAGRPRDENVHRAILDAARDLISEAGYVAFSIEGVAARAGVAKQSIYRRWSSKGALLVDL 67 + GRPR E AIL AA DL+ E+G+ + +IE +A +AGV+K +IY+ WS+K A+++D Sbjct: 4 KLGRPRSEKTKNAILSAAYDLLLESGFGSVTIEKIAEKAGVSKATIYKWWSNKAAVVMDA 63 Query: 68 YMDG----LELPGSSVSQGFKDDLLALLLQTTKRVQDPAFANILKS--------VMVEAQ 115 + D L +P + + DD++ +Q AN L S ++ E Q Sbjct: 64 FFDAAVVRLPVPDTGSTM---DDII---------IQVNNLANFLTSREGKVINEIIAEGQ 111 Query: 116 AEPEMRELVLLKIVEPRREAARHVIERGIQSGEVPEEVDVEMMLDFVFGAVWFNLLFGAS 175 ++ ++ E +PRR +R+++ERGI GE+ E++D+E+++D VFG +++ LL Sbjct: 112 SDQKLAETYRTVYFKPRRLDSRYILERGISRGELKEDLDIELVMDLVFGPLFYRLLITGD 171 Query: 176 GLTNKFAHRAV 186 + F V Sbjct: 172 IVDENFIRNMV 182 >ref|YP_003919081.1| TetR family transcriptional regulator [Bacillus amyloliquefaciens DSM 7] emb|CBI41611.1| putative transcriptional regulator (TetR/AcrR family) [Bacillus amyloliquefaciens DSM 7] Length = 195 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 107/188 (56%), Gaps = 16/188 (8%) Query: 7 ARAGRPRDENVHRAILDAARDLISEAGYVAFSIEGVAARAGVAKQSIYRRWSSKGALLVD 66 ++ GRPRDE H+AIL AA DL+ E G+ A +++ +A RA V+K +IY+ WS+K A+++D Sbjct: 6 SKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKVSKATIYKWWSNKAAVIMD 65 Query: 67 LYM----DGLELP--GSSVSQGFKDDLLALLLQTTK--RVQDPAFANILKSVMVEAQAEP 118 ++ D L +P GS+V +L T R ++K ++ Q + Sbjct: 66 SFLSTATDRLPVPDTGSTVQD--------ILTHATNLARFLTSREGTVIKELIGAGQLDA 117 Query: 119 EMRELVLLKIVEPRREAARHVIERGIQSGEVPEEVDVEMMLDFVFGAVWFNLLFGASGLT 178 ++ E + +PRR A+ ++E+GIQ GE+ E +D+E+ +D ++G +++ LL + Sbjct: 118 KLAEEYRTRFFQPRRLQAKGLLEKGIQQGELRENLDIEVSIDLIYGPIFYRLLITGDEVN 177 Query: 179 NKFAHRAV 186 + + H V Sbjct: 178 DSYVHDLV 185