BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0078.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001863615.1| ABC-type branched-chain amino acid transport... 363 4e-98 ref|YP_001893419.1| branched-chain amino acid ABC transporter, p... 249 5e-64 ref|ZP_07674069.1| branched-chain amino acid ABC transporter, pe... 248 1e-63 ref|YP_004237184.1| extracellular ligand-binding receptor [Acido... 247 2e-63 ref|YP_001567036.1| branched chain amino acid ABC transporter pe... 246 4e-63 >ref|YP_001863615.1| ABC-type branched-chain amino acid transport systems periplasmic component-like protein [Burkholderia phymatum STM815] gb|ACC76565.1| ABC-type branched-chain amino acid transport systems periplasmic component-like protein [Burkholderia phymatum STM815] Length = 289 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 169/280 (60%), Positives = 217/280 (77%), Gaps = 3/280 (1%) Query: 2 PIATTRRHLMLSS--AALAVAAPRMAWGQKA-GTVTMGVITPTTGTFAYAGDLVVRGANL 58 P+ +R +L + A ++W Q T+ +GVI+ TG FAYAGDLV++GA L Sbjct: 3 PLFNFKRRTVLKAGLAGFGSTVAGVSWAQGGDSTLNLGVISQQTGVFAYAGDLVLKGAKL 62 Query: 59 AIEMHGGKVAGHEIKLLTRDDEGKPASGVRRVQEAATSDGMRYFIGAYSSAVGLAESEVA 118 A+ H G VAG +I L+ RDDEGKPA GVRR+ EA TSD + F+G +SSAVGLAE EVA Sbjct: 63 AVNEHNGIVAGKKINLVVRDDEGKPAVGVRRLTEAVTSDKVTCFVGNFSSAVGLAELEVA 122 Query: 119 QREKLLQFAAGGSEDFTGSRCGRYTFQWSAHPYTAVRSTLEHVRKAVPQKKTIYTLTADY 178 +++K+LQFAAGGSEDF G RCG YTFQWSAHPYTA+R+TL++V+K++P+KK IYT+TADY Sbjct: 123 RQQKILQFAAGGSEDFAGQRCGSYTFQWSAHPYTALRATLKYVKKSLPEKKRIYTITADY 182 Query: 179 VFGHALLKYTKIAAAELGFELVGNDNHPFGERQYTQYLTKVVATKPDILLLNTAGADAVT 238 FG +LL Y ++ A ELG EL+GNDNHP GERQ+TQY TK ++T+PD++ TAGADAV+ Sbjct: 183 AFGQSLLHYAQVTAKELGLELLGNDNHPLGERQFTQYFTKALSTRPDMICFLTAGADAVS 242 Query: 239 AIRQFASFGAANIAVVGPWTLEVDQLPELAPEMRSGMILG 278 AIRQF SFGA N+ +VGPWTLEV+Q+ EL+P MRSG+ILG Sbjct: 243 AIRQFNSFGAKNVQLVGPWTLEVEQMRELSPAMRSGLILG 282 >ref|YP_001893419.1| branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Ralstonia pickettii 12J] ref|YP_002983762.1| extracellular ligand-binding receptor [Ralstonia pickettii 12D] gb|ACD29992.1| branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Ralstonia pickettii 12J] gb|ACS65090.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12D] Length = 399 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 211/399 (52%), Gaps = 8/399 (2%) Query: 6 TRRHLMLSSAALAVAAP----RMAWGQKAGTVTMGVITPTTGTFAYAGDLVVRGANLAIE 61 RR L+ +A AV A R AW A + +G P +G FA G G LA+E Sbjct: 2 NRRDLLKLAALSAVPASLLQARSAWA--ADAIELGCPVPMSGPFAANGKFADLGMKLAVE 59 Query: 62 MHGGKVAGHEIKLLTRDDEGKPASGVRRVQEAATSDGMRYFIGAYSSAVGLAESEVAQRE 121 +G KV G + D EGKPA+ VR+VQE A RYF G S+ LA + A++ Sbjct: 60 QYG-KVLGRPLAYSVLDTEGKPATAVRKVQELAQQKNARYFAGGILSSESLAMGKEAEKF 118 Query: 122 KLLQFAAGGSEDFTGSRCGRYTFQWSAHPYTAVRSTLEHVRKAVPQKKTIYTLTADYVFG 181 + G+++ TG C R TF+WS Y A+ T+ + +++P+ K YT+T YVFG Sbjct: 119 GGVFITTAGADEITGKDCNRATFRWSVPTYGAIERTVRPLIESMPKAKRWYTITPQYVFG 178 Query: 182 HALLKYTKIAAAELGFELVGNDNHPFGERQYTQYLTKVVATKPDILLLNTAGADAVTAIR 241 LL K E G E VGN H E++++ YLT +A KPD+LL+ G+ + +R Sbjct: 179 DGLLSAAKNIFKEKGIEHVGNSYHALTEKEFSGYLTNAMAAKPDVLLILNFGSQSSDTLR 238 Query: 242 QFASFG-AANIAVVGPWTLEVDQLPELAPEMRSGMILGQNYYPDIDTPANKAFVARYSKK 300 Q SFG N ++ W ++Q L ++ G+ G Y+ D+DTPAN V R Sbjct: 239 QAVSFGMKKNTTILVAWASGLEQFESLGADLCDGVYFGAQYWHDVDTPANHDLVKRTQAA 298 Query: 301 FSALPGYSSAYGYDAFRTVLMAMEQARSVEVADVVRTIEGMSWDGVLGRMSIDPKTHQLV 360 F + P YS A Y + +L AM +A SV+ V+ ++GM +DG+ G I HQ++ Sbjct: 299 FKSNPNYSLAGSYTCTKILLDAMVKAGSVDPKAVIAALQGMKYDGLTGPEEIRAADHQVL 358 Query: 361 RPYFVVRCKAQAEMKSPADFAEIVALGDKQQPADQNQCK 399 + Y++++ K + MK DFAE+V++G P +Q QCK Sbjct: 359 KNYYLLKGKPKNRMKDKDDFAEVVSVGKAFLPVEQTQCK 397 >ref|ZP_07674069.1| branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67500.1| branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Ralstonia sp. 5_7_47FAA] Length = 399 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 210/399 (52%), Gaps = 8/399 (2%) Query: 6 TRRHLMLSSAALAVAAP----RMAWGQKAGTVTMGVITPTTGTFAYAGDLVVRGANLAIE 61 RR L+ +A AV A R AW A + +G P +G FA G G LA+E Sbjct: 2 NRRDLLKLAALSAVPASLLQARSAWA--ADAIELGCPVPMSGPFAANGKFADLGMKLAVE 59 Query: 62 MHGGKVAGHEIKLLTRDDEGKPASGVRRVQEAATSDGMRYFIGAYSSAVGLAESEVAQRE 121 +G KV G + D EGKPA+ VR+VQE A RYF G S+ LA + A++ Sbjct: 60 QYG-KVLGRPLAYSVLDTEGKPATAVRKVQELAQQKNARYFAGGILSSESLAMGKEAEKF 118 Query: 122 KLLQFAAGGSEDFTGSRCGRYTFQWSAHPYTAVRSTLEHVRKAVPQKKTIYTLTADYVFG 181 + G+++ TG C R TF+WS Y A+ T+ + +++P+ K YT+T YVFG Sbjct: 119 GGVFITTAGADEITGKDCNRATFRWSVPTYGAIERTVRPLIESMPKAKRWYTITPQYVFG 178 Query: 182 HALLKYTKIAAAELGFELVGNDNHPFGERQYTQYLTKVVATKPDILLLNTAGADAVTAIR 241 LL K E G E VGN H E++++ YLT +A KPD+LL+ G+ + +R Sbjct: 179 DGLLSAAKNIFKEKGIEHVGNSYHALTEKEFSGYLTNAMAAKPDVLLILNFGSQSSDTLR 238 Query: 242 QFASFG-AANIAVVGPWTLEVDQLPELAPEMRSGMILGQNYYPDIDTPANKAFVARYSKK 300 Q SFG N ++ W ++Q L ++ G+ G Y+ D+DTPAN+ V R Sbjct: 239 QAVSFGMKKNTTILVAWASGLEQFESLGADLCDGVYFGAQYWHDVDTPANRDLVKRTQAA 298 Query: 301 FSALPGYSSAYGYDAFRTVLMAMEQARSVEVADVVRTIEGMSWDGVLGRMSIDPKTHQLV 360 F P YS A Y + +L AM +A S + V+ ++GM +DG+ G I HQ++ Sbjct: 299 FKTNPNYSLAGSYTCTKILLDAMAKAGSADPKAVIAALQGMKYDGLTGPEEIRAADHQVL 358 Query: 361 RPYFVVRCKAQAEMKSPADFAEIVALGDKQQPADQNQCK 399 + Y++++ K ++ MK DFAE+VA+G P +Q CK Sbjct: 359 KNYYLLKGKPKSRMKDKDDFAEVVAVGKAFLPVEQTHCK 397 >ref|YP_004237184.1| extracellular ligand-binding receptor [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48617.1| Extracellular ligand-binding receptor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 401 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 209/398 (52%), Gaps = 6/398 (1%) Query: 7 RRHLMLSSAALAVAAP----RMAWGQKAGTVTMGVITPTTGTFAYAGDLVVRGANLAIEM 62 RRHL+ SA A+ A R AW Q G + G P +G FA G G LAIE Sbjct: 3 RRHLLQLSALGALPASLGLAREAWAQSTGAIQFGCPVPMSGAFAANGKFADLGMKLAIEQ 62 Query: 63 HGGKVAGHEIKLLTRDDEGKPASGVRRVQEAATSDGMRYFIGAYSSAVGLAESEVAQREK 122 +G K G + D EGKPA+ VR+VQEA+ G R+F G S+ LA + A++ Sbjct: 63 YG-KALGRPLAYTVLDTEGKPATAVRKVQEASQQQGTRFFAGGILSSESLAMGKEAEKAG 121 Query: 123 LLQFAAGGSEDFTGSRCGRYTFQWSAHPYTAVRSTLEHVRKAVPQKKTIYTLTADYVFGH 182 + G+++ TG C TF+WS + A+ T+ + A+P+ K YT+T YVFG Sbjct: 122 GIFITTAGADEITGKDCNSATFRWSVPTFGAIEQTVRPLADALPKAKRWYTITPQYVFGD 181 Query: 183 ALLKYTKIAAAELGFELVGNDNHPFGERQYTQYLTKVVATKPDILLLNTAGADAVTAIRQ 242 LL K E G E VGN H E++++ YLT +A KPD+LLL G+ + A+RQ Sbjct: 182 GLLSAAKNVFKEKGLEHVGNSYHSLTEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDALRQ 241 Query: 243 FASFGA-ANIAVVGPWTLEVDQLPELAPEMRSGMILGQNYYPDIDTPANKAFVARYSKKF 301 SFG N+ ++ W ++Q L ++ G+ G Y+ +D P N V R +KF Sbjct: 242 AVSFGMHKNMTILIAWASGLEQFESLGADLCDGIYFGAQYWHTVDAPLNLELVKRSQEKF 301 Query: 302 SALPGYSSAYGYDAFRTVLMAMEQARSVEVADVVRTIEGMSWDGVLGRMSIDPKTHQLVR 361 + P YS A Y + ++ + +A +VE VV +EGM + G+ G + HQ+++ Sbjct: 302 KSNPNYSLAGSYICTKLLIDGIIKAGTVEPKAVVAALEGMKYAGLTGEEEVRKGDHQVLK 361 Query: 362 PYFVVRCKAQAEMKSPADFAEIVALGDKQQPADQNQCK 399 Y++++ K +A+M + D+ ++V+ G P DQ CK Sbjct: 362 NYYLLKGKPKAKMANKDDYVDVVSSGKSFLPLDQTGCK 399 >ref|YP_001567036.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Delftia acidovorans SPH-1] gb|ABX38651.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Delftia acidovorans SPH-1] Length = 401 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 212/398 (53%), Gaps = 6/398 (1%) Query: 7 RRHLMLSSAALAVAAP----RMAWGQKAGTVTMGVITPTTGTFAYAGDLVVRGANLAIEM 62 RRHL+ SA A+ A R W Q ++ P +G FA G G LAIE Sbjct: 3 RRHLLQLSALGALPASLGLGRSVWAQSKDSIQFACPVPMSGAFAANGKYADLGMKLAIEQ 62 Query: 63 HGGKVAGHEIKLLTRDDEGKPASGVRRVQEAATSDGMRYFIGAYSSAVGLAESEVAQREK 122 +G K G + D EGKPA+ VR++QE++ G R+F G S+ LA + A++ Sbjct: 63 YG-KALGRPLAYTVLDTEGKPATAVRKLQESSQQQGTRFFAGGILSSEALAMGKEAEKTG 121 Query: 123 LLQFAAGGSEDFTGSRCGRYTFQWSAHPYTAVRSTLEHVRKAVPQKKTIYTLTADYVFGH 182 + G+++ TG C TF+WSA + A+ T+ + +A+P+ K YT+T YVFG Sbjct: 122 GIFITTAGADEITGKDCNSATFRWSAPTFGAIEQTVRPLVEALPKAKRWYTITPQYVFGD 181 Query: 183 ALLKYTKIAAAELGFELVGNDNHPFGERQYTQYLTKVVATKPDILLLNTAGADAVTAIRQ 242 LL K E G E VGN H E++++ YLT VA KPD+LLL GA + +RQ Sbjct: 182 GLLTAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAVAAKPDVLLLLNFGAQSSDTLRQ 241 Query: 243 FASFGA-ANIAVVGPWTLEVDQLPELAPEMRSGMILGQNYYPDIDTPANKAFVARYSKKF 301 SFG N+ ++ W ++Q L ++ G+ G Y+ +DTP N+ V R + KF Sbjct: 242 AISFGMNKNMTILIAWASGLEQFESLGADLCDGVYFGAQYWHTVDTPLNRDLVQRCNDKF 301 Query: 302 SALPGYSSAYGYDAFRTVLMAMEQARSVEVADVVRTIEGMSWDGVLGRMSIDPKTHQLVR 361 A P YS A Y + ++ A+ +A + + VV +EGM + G+ G + HQ+++ Sbjct: 302 KANPNYSLAGHYICTKLMIDAIIKAGTADPKAVVAALEGMKYQGLTGEEEVRKADHQVLK 361 Query: 362 PYFVVRCKAQAEMKSPADFAEIVALGDKQQPADQNQCK 399 Y++++ KA+++MK+ D+ ++V+ G P DQ CK Sbjct: 362 SYYLLKGKAKSKMKNKDDYVDVVSSGKSFLPVDQTGCK 399