BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0076.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001770336.1| inner-membrane translocator [Methylobacteriu...   115   3e-24
ref|ZP_01165315.1| probable transmembrane ABC transporter protei...   113   7e-24
ref|ZP_01166347.1| probable transmembrane ABC transporter protei...   112   1e-23
ref|YP_004304257.1| branched-chain amino acid ABC transporter pe...   112   2e-23
ref|NP_888031.1| high-affinity branched-chain amino acid transpo...   112   2e-23

>ref|YP_001770336.1| inner-membrane translocator [Methylobacterium sp. 4-46]
 gb|ACA17902.1| inner-membrane translocator [Methylobacterium sp. 4-46]
          Length = 301

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 85/127 (66%)

Query: 12  IEWTRFGAWVRAGIERPEMTQSLGINVDLLLIAGMMLGAGLAGLAGGLALPLMGATSTMG 71
            E TR GA++RAG E P + Q+ GINV L++      G  LAGLAG LA P+M  T  MG
Sbjct: 174 FERTRLGAYLRAGTENPRLLQAFGINVPLMITLAYGFGVALAGLAGVLAAPIMQVTPLMG 233

Query: 72  GDMMAIAFVVLVIGGLGSLYGAIAAGLMVGVVQSLMTVAAPAASTAIIYLVMIVILLVRP 131
           G ++ I F V+VIGGLGS+ GA+  GL +G+V+ +  V  P AST +I+++M ++LL+RP
Sbjct: 234 GSILNIVFAVVVIGGLGSILGAMVTGLGLGLVEGVTKVVYPEASTVVIFVIMALVLLLRP 293

Query: 132 QGLFGER 138
            GLFG  
Sbjct: 294 AGLFGRE 300


>ref|ZP_01165315.1| probable transmembrane ABC transporter protein [Oceanospirillum sp.
           MED92]
 gb|EAR62667.1| probable transmembrane ABC transporter protein [Oceanospirillum sp.
           MED92]
          Length = 295

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 86/128 (67%)

Query: 11  LIEWTRFGAWVRAGIERPEMTQSLGINVDLLLIAGMMLGAGLAGLAGGLALPLMGATSTM 70
           +IE T+ GA++RAG E P++ Q+ GINV L++      G GLAG AG +A P+   +  M
Sbjct: 167 MIEKTKLGAYLRAGTENPQLMQAFGINVPLIVTLTFGFGVGLAGFAGVMAAPVYSVSPDM 226

Query: 71  GGDMMAIAFVVLVIGGLGSLYGAIAAGLMVGVVQSLMTVAAPAASTAIIYLVMIVILLVR 130
           G +M+ + F ++VIGG+GS+ GAI  GL +GVV+ L     P AST +I+ VM+++LL +
Sbjct: 227 GSNMLIVVFAIVVIGGMGSIGGAILTGLGMGVVEGLTKYFYPEASTTVIFAVMVIVLLTK 286

Query: 131 PQGLFGER 138
           P GLFG+ 
Sbjct: 287 PAGLFGKE 294


>ref|ZP_01166347.1| probable transmembrane ABC transporter protein [Oceanospirillum sp.
           MED92]
 gb|EAR61600.1| probable transmembrane ABC transporter protein [Oceanospirillum sp.
           MED92]
          Length = 292

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 87/128 (67%)

Query: 11  LIEWTRFGAWVRAGIERPEMTQSLGINVDLLLIAGMMLGAGLAGLAGGLALPLMGATSTM 70
           +IE T+ GA++RAG E P++ Q+ GINV L++      G  LAG AG +A P+   +  M
Sbjct: 164 MIEKTKLGAYLRAGTENPQLMQAFGINVPLIVTLTFGFGVALAGFAGVMAAPVYSVSPDM 223

Query: 71  GGDMMAIAFVVLVIGGLGSLYGAIAAGLMVGVVQSLMTVAAPAASTAIIYLVMIVILLVR 130
           G +++ + F ++VIGG+GS+ GAI  GL +GVV+ L     P AST +I+LVM+++LL++
Sbjct: 224 GSNILIVVFAIVVIGGMGSIGGAILTGLGMGVVEGLTKYFYPEASTTVIFLVMVIVLLLK 283

Query: 131 PQGLFGER 138
           P GLFG+ 
Sbjct: 284 PAGLFGKE 291


>ref|YP_004304257.1| branched-chain amino acid ABC transporter permease [Polymorphum
           gilvum SL003B-26A1]
 gb|ADZ70954.1| Branched-chain amino acid ABC transporter, permease protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 291

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 87/129 (67%)

Query: 10  LLIEWTRFGAWVRAGIERPEMTQSLGINVDLLLIAGMMLGAGLAGLAGGLALPLMGATST 69
            L+  T FG  VRAGI++P+M  +LGI +   + A ++LG GLA L G L  P+      
Sbjct: 158 FLLNKTAFGRVVRAGIQKPDMVAALGIRLQPYMTAVIVLGVGLAALGGALFAPITIVHPA 217

Query: 70  MGGDMMAIAFVVLVIGGLGSLYGAIAAGLMVGVVQSLMTVAAPAASTAIIYLVMIVILLV 129
           MG +++ +AFVV+VIGGLGS +G I A LMVGVV+ +     PAA  A +YL+M ++L++
Sbjct: 218 MGAEILTVAFVVVVIGGLGSFWGVIVAALMVGVVRGVTIHFVPAAGAASMYLLMFLVLML 277

Query: 130 RPQGLFGER 138
           RP+GLFGER
Sbjct: 278 RPRGLFGER 286


>ref|NP_888031.1| high-affinity branched-chain amino acid transporter membrane
           protein [Bordetella bronchiseptica RB50]
 emb|CAE31983.1| Putative high-affinity branched-chain amino acid transporter
           membrane protein [Bordetella bronchiseptica RB50]
          Length = 295

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 87/128 (67%)

Query: 10  LLIEWTRFGAWVRAGIERPEMTQSLGINVDLLLIAGMMLGAGLAGLAGGLALPLMGATST 69
           LLIE TR G+++RA  E P+M ++ GI V +LL      GAGLAGLAG +A P+   +  
Sbjct: 166 LLIEKTRLGSYLRAATENPDMVRAFGIKVPVLLTLTYAFGAGLAGLAGVMAAPIYQVSPL 225

Query: 70  MGGDMMAIAFVVLVIGGLGSLYGAIAAGLMVGVVQSLMTVAAPAASTAIIYLVMIVILLV 129
           MG +++ + F V+VIGG+GS+ G+I  G  +G ++ L  +  P AS  +I+LVMI++LL+
Sbjct: 226 MGSNLVILVFAVVVIGGMGSILGSILTGFSLGAIEGLTKLFYPQASATVIFLVMIIVLLI 285

Query: 130 RPQGLFGE 137
           +P GLFG+
Sbjct: 286 KPTGLFGK 293