BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0075.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002873535.1| putative ABC transporter membrane protein [P... 201 1e-49 ref|NP_742779.1| inner-membrane translocator [Pseudomonas putida... 193 3e-47 ref|YP_586611.1| Branched-chain amino acid inner-membrane transl... 185 9e-45 gb|ADR58358.1| Inner-membrane translocator [Pseudomonas putida B... 179 5e-43 ref|ZP_08139570.1| inner-membrane translocator [Pseudomonas sp. ... 177 1e-42 >ref|YP_002873535.1| putative ABC transporter membrane protein [Pseudomonas fluorescens SBW25] emb|CAY50384.1| putative ABC transport system, membrane protein [Pseudomonas fluorescens SBW25] Length = 336 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 179/302 (59%), Gaps = 8/302 (2%) Query: 25 LPLVIP-VNIATEVLIYGIFAMATNLLVGTAGLYSFGQAAFFGAGGYVAGYFLTQGFVSL 83 LPL +P +ATE+LI+ + A+A NLL+G GL SFGQ FFGAG Y A + + L Sbjct: 28 LPLTLPSATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGAGAYCAALLMIHLQLGL 87 Query: 84 PLALLLAGTGGGVLAALIGALSIRRTGIYFMMLTFAFNQLVFYVIYSWQS----VXGLAG 139 ALL A GG LA L+GAL+IRRTGIYF+MLT AF+Q+ ++V Y+ GL Sbjct: 88 FTALLGAAIAGGFLALLVGALAIRRTGIYFVMLTLAFSQMAYFVAYTLSDWTGGDNGLLS 147 Query: 140 IRRGTIELPLLGTLKFDDNRAFYALAAVLFLASMAILIRMTRSPFGLVLAAARQNARRTT 199 + R I L L D RAFY AVLFL R+ SPFG L A R+N R + Sbjct: 148 VPRPEIRLGDTVLLSLADARAFYGFVAVLFLLIFIGARRVIASPFGSTLMAIRENETRAS 207 Query: 200 SLGYSVQALQLAAFVIAGVISGIAGALFGMLYRIMPIDAVHWTGSAYVVFMVLIGGPRSM 259 ++GY + ++ FV++G ++GIAGAL+ ML +P+ + S ++ M ++GG S+ Sbjct: 208 AIGYDTRHFKILVFVLSGAVTGIAGALYAMLLHFVPLSNIDLAMSENILIMTIVGGTGSL 267 Query: 260 LGPVLGAAIFIWLQGLFSLVWTRWPLLLGLFVIVVMIYLPGGLLDFFDRVSALRSRLREQ 319 G +LGA + L S +W RW +LLG+ +I+V+I++ GGL + +++L ++R Sbjct: 268 FGSLLGAGSIVLLGDFLSDLWPRWLMLLGVILILVVIFMRGGL---WGGLASLFEKVRGS 324 Query: 320 RQ 321 R+ Sbjct: 325 RK 326 >ref|NP_742779.1| inner-membrane translocator [Pseudomonas putida KT2440] ref|YP_001266009.1| inner-membrane translocator [Pseudomonas putida F1] gb|AAN66243.1|AE016252_11 branched-chain amino acid ABC transporter, permease protein [Pseudomonas putida KT2440] gb|ABQ76825.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Pseudomonas putida F1] Length = 339 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%) Query: 25 LPLVIP-VNIATEVLIYGIFAMATNLLVGTAGLYSFGQAAFFGAGGYVAGYFLTQGFVSL 83 LPL++P +ATE+LI+ + A+A NLL+G GL SFGQ FFG G Y A + + Sbjct: 28 LPLLLPSATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGVGAYGAALLMIHLQWGM 87 Query: 84 PLALLLAGTGGGVLAALIGALSIRRTGIYFMMLTFAFNQLVFYVIYS---WQS-VXGLAG 139 ALL A G LA L+GAL+IRRTGIYF+MLT AF+Q+ +++ Y+ W GL Sbjct: 88 FAALLGAAVFGAFLALLVGALAIRRTGIYFVMLTLAFSQMAYFLAYTLSGWTGGDNGLLD 147 Query: 140 IRRGTIELPLLGTLKFDDNRAFYALAAVLFLASMAILIRMTRSPFGLVLAAARQNARRTT 199 + R IE+ + D R FY AVLFL A +R+ RSPFG L A R+N R Sbjct: 148 VPRPNIEIAGHVLVDLADPRHFYVFVAVLFLLIFAAALRVIRSPFGSTLLAIRENETRAA 207 Query: 200 SLGYSVQALQLAAFVIAGVISGIAGALFGMLYRIMPIDAVHWTGSAYVVFMVLIGGPRSM 259 ++GY + ++ F+++G I+GIAGAL+ ML P+ + S ++ M ++GG S+ Sbjct: 208 AIGYDTRHFKILVFMLSGAITGIAGALYAMLLHFAPLSNIDLMMSENILIMTIVGGTGSL 267 Query: 260 LGPVLGAAIFIWLQGLFSLVWTRWPLLLGLFVIVVMIYLPGGLLDFFDRVSALRSRLREQ 319 G +LGA + L + S +W RW +LLG+ +I+V++++ GGL + ++ L RL Sbjct: 268 FGSLLGAGAIVLLGDVLSELWPRWLMLLGVILILVVVFMRGGL---WGGLTELGKRLLAT 324 Query: 320 RQ 321 R Sbjct: 325 RN 326 >ref|YP_586611.1| Branched-chain amino acid inner-membrane translocator (inner-membrane translocator) [Cupriavidus metallidurans CH34] gb|ABF11342.1| Branched-chain amino acid inner-membrane translocator (inner-membrane translocator) [Cupriavidus metallidurans CH34] Length = 332 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 173/299 (57%), Gaps = 9/299 (3%) Query: 25 LPLVIPV-NIATEVLIYGIFAMATNLLVGTAGLYSFGQAAFFGAGGYVAGYFLTQ-GFVS 82 LPL + +ATEVLIYG+ AMA NLL+G GL SFGQ FFG G Y G LT+ G + Sbjct: 24 LPLTMRSGTLATEVLIYGMAAMACNLLLGYTGLLSFGQGIFFGLGSYAVGLALTRAGGLP 83 Query: 83 LPLALLLAGTGGGVLAALIGALSIRRTGIYFMMLTFAFNQLVFYVIYSWQSVXG----LA 138 +P+ALL A G AAL+G SIR+ G YF+MLT AF Q+ +++ Y+ + G L Sbjct: 84 MPVALLGAVVIGAATAALVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTAPGITGGDNGLL 143 Query: 139 GIRRGTIELPLLGTLKFDDNRAFYALAAVLFLASMAILIRMTRSPFGLVLAAARQNARRT 198 I R I + + + FY AVLFL A+++R+T S G L A R N R Sbjct: 144 DIPRPPISIGGHALIDLTSSWGFYGFVAVLFLIVFALVLRVTESVLGRTLLAIRDNEERA 203 Query: 199 TSLGYSVQALQLAAFVIAGVISGIAGALFGMLYRIMPIDAVHWTGSAYVVFMVLIGGPRS 258 ++GY+ +A +L AFVI+G ++G+AGAL ML I P+ + + S ++ M +IGG + Sbjct: 204 LAVGYNTRAFKLLAFVISGAVTGLAGALHAMLTGIAPLANIDYHASEMILIMTVIGGTSN 263 Query: 259 MLGPVLGAAIFIWLQGLFSLVWTRWPLLLGLFVIVVMIYLPGGLLDFFDRVSALRSRLR 317 + VLGAA ++ L S +W RW +LLG +I V +++ GL ++A RLR Sbjct: 264 IFASVLGAAFYVLLADWLSTLWPRWLMLLGFLLIAVSLFMQRGLWGLGSTIAA---RLR 319 >gb|ADR58358.1| Inner-membrane translocator [Pseudomonas putida BIRD-1] Length = 339 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 175/315 (55%), Gaps = 34/315 (10%) Query: 25 LPLVIP-VNIATEVLIYGIFAMATNLLVGTAGLYSFGQAAFFGAGGYVAGYFLTQGFVSL 83 LPL++P +ATE+LI+ + A+A NLL+G GL SFGQ FFG G Y A Sbjct: 28 LPLLLPSATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGVGAYGA----------- 76 Query: 84 PLALLLAGTGGGVLAALIGA-------------LSIRRTGIYFMMLTFAFNQLVFYVIYS 130 ALL+ G+ AAL+GA L+IRRTGIYF+MLT AF+Q+ +++ Y+ Sbjct: 77 --ALLMIHLQWGMFAALLGAAVFGALLALLVGALAIRRTGIYFVMLTLAFSQMAYFLAYT 134 Query: 131 WQS----VXGLAGIRRGTIELPLLGTLKFDDNRAFYALAAVLFLASMAILIRMTRSPFGL 186 GL + R IE+ + D R FY AVLFL A +R+ RSPFG Sbjct: 135 LSDWTGGDNGLLDVPRPNIEIAGHVLVDLADPRHFYVFVAVLFLLIFAAALRVIRSPFGS 194 Query: 187 VLAAARQNARRTTSLGYSVQALQLAAFVIAGVISGIAGALFGMLYRIMPIDAVHWTGSAY 246 L A R+N R ++GY + ++ F+++G I+GIAGAL+ ML P+ + S Sbjct: 195 TLLAIRENETRAAAIGYDTRHFKILVFMLSGAITGIAGALYAMLLHFAPLSNIDLMMSEN 254 Query: 247 VVFMVLIGGPRSMLGPVLGAAIFIWLQGLFSLVWTRWPLLLGLFVIVVMIYLPGGLLDFF 306 ++ M ++GG S+ G +LGA + L + S +W RW +LLG+ +I+V++++ GGL + Sbjct: 255 ILIMTIVGGTGSLFGSLLGAGAIVLLGDVLSELWPRWLMLLGVILILVVVFMRGGL---W 311 Query: 307 DRVSALRSRLREQRQ 321 ++ L RL R Sbjct: 312 GGLTELGKRLLATRN 326 >ref|ZP_08139570.1| inner-membrane translocator [Pseudomonas sp. TJI-51] gb|EGB99147.1| inner-membrane translocator [Pseudomonas sp. TJI-51] Length = 339 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 115/282 (40%), Positives = 169/282 (59%), Gaps = 5/282 (1%) Query: 26 PLVIP-VNIATEVLIYGIFAMATNLLVGTAGLYSFGQAAFFGAGGYVAGYFLTQGFVSLP 84 PL++P +ATE+LI+ + A+A NLL+G GL SFGQ FFG G Y A + + Sbjct: 29 PLLLPSATLATEILIFALAALACNLLLGYTGLLSFGQGIFFGVGAYGAALLMIHLQWGMF 88 Query: 85 LALLLAGTGGGVLAALIGALSIRRTGIYFMMLTFAFNQLVFYVIYS---WQS-VXGLAGI 140 ALL A G LA L+GAL+IRRTGIYF+MLT AF+Q+ +++ Y+ W GL + Sbjct: 89 AALLGAAVFGAFLALLVGALAIRRTGIYFVMLTLAFSQMAYFLAYTLSGWTGGDNGLLDV 148 Query: 141 RRGTIELPLLGTLKFDDNRAFYALAAVLFLASMAILIRMTRSPFGLVLAAARQNARRTTS 200 R IE+ + D R FY AVLFL A +R+ RSPFG L A R+N R + Sbjct: 149 PRPNIEIAGHMLVDLADPRHFYVFVAVLFLLIFAGALRVIRSPFGSTLLAIRENETRAAA 208 Query: 201 LGYSVQALQLAAFVIAGVISGIAGALFGMLYRIMPIDAVHWTGSAYVVFMVLIGGPRSML 260 +GY + ++ F+++G I+GIAGAL+ ML P+ + S ++ M ++GG S+ Sbjct: 209 IGYDTRHFKILVFMLSGAITGIAGALYAMLLHFAPLSNIDLMMSENILIMTIVGGTGSLF 268 Query: 261 GPVLGAAIFIWLQGLFSLVWTRWPLLLGLFVIVVMIYLPGGL 302 G +LGA + L + S +W RW +LLG+ +I+V++++ GGL Sbjct: 269 GSLLGAGAIVLLGDVLSELWPRWLMLLGVILILVVVFMRGGL 310