BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0063.p         (303 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002363635.1| LysR family transcriptional regulator [Methy...   557   e-157
ref|YP_002978345.1| LysR family transcriptional regulator [Rhizo...   557   e-157
ref|NP_770632.1| transcriptional regulator [Bradyrhizobium japon...   556   e-156
ref|YP_002360722.1| LysR family transcriptional regulator [Methy...   555   e-156
ref|YP_004140407.1| LysR family transcriptional regulator [Mesor...   551   e-155

>ref|YP_002363635.1| LysR family transcriptional regulator [Methylocella silvestris BL2]
 gb|ACK52273.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 298

 Score =  557 bits (1435), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/298 (90%), Positives = 283/298 (94%)

Query: 6   MIDWDDVRYFLAVARGGSVRAAAERLGVNHSTVLRRVAQLEERLGAQMFERLPSGYRLTA 65
           MIDWDDVRYFLA ARGGSVRAAA RLGVNHSTVLRR+AQLEERLGAQMFE+LPSGYRLTA
Sbjct: 1   MIDWDDVRYFLAAARGGSVRAAAGRLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTA 60

Query: 66  AGEEVLELAEQMEASSHQLETRVFGRDQGVRGRLRVTLAPPLATHLLMPDFADFARLHPD 125
           AGEEVLELA QMEASSHQLETRVFGRDQ VRG LRVTLAPPLATHLLMPDFADF RLHPD
Sbjct: 61  AGEEVLELANQMEASSHQLETRVFGRDQSVRGLLRVTLAPPLATHLLMPDFADFTRLHPD 120

Query: 126 IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGGIYISRDRLAAWRA 185
           IEMEILSSGELANLTNREADVA+RVVYDRKTLPLNLHGLKGPELFGG+YISRDRLAAWR 
Sbjct: 121 IEMEILSSGELANLTNREADVALRVVYDRKTLPLNLHGLKGPELFGGVYISRDRLAAWRE 180

Query: 186 GAPDPVRWIVISIHGIPDWAHEGEVRTAEVPFRATDAEAQIVAVRQGLGMTTLPCFVGDA 245
           GAPDP+RWIVIS+HGIPDWA EGEVR   VPFR TDAEAQIVAVRQG+GMTTLPCF+GDA
Sbjct: 181 GAPDPIRWIVISMHGIPDWASEGEVRATGVPFRTTDAEAQIVAVRQGIGMTTLPCFIGDA 240

Query: 246 DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTKFVSRRLTAYAPLLAGLSVSRD 303
           DPLLVR PG DLHMYGT+WLLTQGETRKTKRVR+FT+FVSRRL AYAPLLAGLS+SR+
Sbjct: 241 DPLLVRTPGADLHMYGTVWLLTQGETRKTKRVRIFTEFVSRRLAAYAPLLAGLSISRN 298


>ref|YP_002978345.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gb|ACS58806.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  557 bits (1435), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/298 (90%), Positives = 287/298 (96%)

Query: 6   MIDWDDVRYFLAVARGGSVRAAAERLGVNHSTVLRRVAQLEERLGAQMFERLPSGYRLTA 65
           MIDWDD+RYFLAVARGGSVRAAA+ LGVNH+TVLRR+AQLEERLGAQMFE+LPSGYRLTA
Sbjct: 1   MIDWDDIRYFLAVARGGSVRAAAKGLGVNHATVLRRIAQLEERLGAQMFEKLPSGYRLTA 60

Query: 66  AGEEVLELAEQMEASSHQLETRVFGRDQGVRGRLRVTLAPPLATHLLMPDFADFARLHPD 125
           AGEEVLELA QMEASSH+LETRVFGRDQ VRG LRVTLAPPLATHLLMPDFADFARLHPD
Sbjct: 61  AGEEVLELANQMEASSHELETRVFGRDQSVRGLLRVTLAPPLATHLLMPDFADFARLHPD 120

Query: 126 IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGGIYISRDRLAAWRA 185
           IEMEI+SSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGP++FGG+Y+S DRLAAWRA
Sbjct: 121 IEMEIVSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPDIFGGVYMSCDRLAAWRA 180

Query: 186 GAPDPVRWIVISIHGIPDWAHEGEVRTAEVPFRATDAEAQIVAVRQGLGMTTLPCFVGDA 245
           GAPDP+RWIVISIHGIPDWA EGE+RT  VPFR TD EAQIVAVRQGLG+TTLPCFVGDA
Sbjct: 181 GAPDPIRWIVISIHGIPDWASEGEIRTTGVPFRTTDGEAQIVAVRQGLGITTLPCFVGDA 240

Query: 246 DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTKFVSRRLTAYAPLLAGLSVSRD 303
           DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFT+FVSRRL+AYAPLLAGL +SRD
Sbjct: 241 DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTEFVSRRLSAYAPLLAGLPISRD 298


>ref|NP_770632.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49257.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 367

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/302 (90%), Positives = 285/302 (94%)

Query: 1   VPECTMIDWDDVRYFLAVARGGSVRAAAERLGVNHSTVLRRVAQLEERLGAQMFERLPSG 60
           V +CTMIDWDDVRYFLAVARGGSVRAAAERLGVNH+TVLRR+AQLEERLG  MFE+LPSG
Sbjct: 65  VRDCTMIDWDDVRYFLAVARGGSVRAAAERLGVNHATVLRRIAQLEERLGVHMFEKLPSG 124

Query: 61  YRLTAAGEEVLELAEQMEASSHQLETRVFGRDQGVRGRLRVTLAPPLATHLLMPDFADFA 120
           YRLTAAGEEVLE A+QME SSH LETRVFGRDQ VRG LRVTLAPPLATHLLMPDFADFA
Sbjct: 125 YRLTAAGEEVLEFADQMETSSHLLETRVFGRDQSVRGLLRVTLAPPLATHLLMPDFADFA 184

Query: 121 RLHPDIEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGGIYISRDRL 180
           RLHPDIEMEILS GELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFG +Y+SRDRL
Sbjct: 185 RLHPDIEMEILSFGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGAVYMSRDRL 244

Query: 181 AAWRAGAPDPVRWIVISIHGIPDWAHEGEVRTAEVPFRATDAEAQIVAVRQGLGMTTLPC 240
           AAWRAGAPDPVRWIVIS+HGIPDWA EGEVRT   PFR TDA AQI AVRQGLG+TTLPC
Sbjct: 245 AAWRAGAPDPVRWIVISMHGIPDWASEGEVRTTGGPFRVTDAGAQIAAVRQGLGITTLPC 304

Query: 241 FVGDADPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTKFVSRRLTAYAPLLAGLSV 300
           FVGDADPLLVRVPGTDLHMYGT+WLLTQGETRKTKRVRLFT+FVSRRLTAYAPLLAGLSV
Sbjct: 305 FVGDADPLLVRVPGTDLHMYGTVWLLTQGETRKTKRVRLFTEFVSRRLTAYAPLLAGLSV 364

Query: 301 SR 302
           SR
Sbjct: 365 SR 366


>ref|YP_002360722.1| LysR family transcriptional regulator [Methylocella silvestris BL2]
 gb|ACK49360.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 298

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/298 (90%), Positives = 283/298 (94%)

Query: 6   MIDWDDVRYFLAVARGGSVRAAAERLGVNHSTVLRRVAQLEERLGAQMFERLPSGYRLTA 65
           MIDWDDVRYFLAVARGGSVRAAA RLGVNHSTVLRR+AQLEERLGAQMFE+LPSGYRLTA
Sbjct: 1   MIDWDDVRYFLAVARGGSVRAAAGRLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTA 60

Query: 66  AGEEVLELAEQMEASSHQLETRVFGRDQGVRGRLRVTLAPPLATHLLMPDFADFARLHPD 125
           AGEEVLELA QMEASSHQLETRVFGRDQ VRG LRVTLAPPLATHLLMPDFADF RLHPD
Sbjct: 61  AGEEVLELANQMEASSHQLETRVFGRDQSVRGLLRVTLAPPLATHLLMPDFADFTRLHPD 120

Query: 126 IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGGIYISRDRLAAWRA 185
           IEMEILSSGELANLTNREADVA+RVVYDRKTLPLNLHGLKGPELFGG+YISRDRLAAWRA
Sbjct: 121 IEMEILSSGELANLTNREADVALRVVYDRKTLPLNLHGLKGPELFGGVYISRDRLAAWRA 180

Query: 186 GAPDPVRWIVISIHGIPDWAHEGEVRTAEVPFRATDAEAQIVAVRQGLGMTTLPCFVGDA 245
           GAPDP+RWIVISIHGIPDWA EGEV    VPFR TDAEAQIVAVRQG+GMTTLPCF+GDA
Sbjct: 181 GAPDPIRWIVISIHGIPDWASEGEVGATGVPFRTTDAEAQIVAVRQGIGMTTLPCFIGDA 240

Query: 246 DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTKFVSRRLTAYAPLLAGLSVSRD 303
           DPLLVR P  DLHMYGT+WLLTQGETRKT+RVR+FT+FVSRRL AYAPLLAGLS+SRD
Sbjct: 241 DPLLVRAPRADLHMYGTVWLLTQGETRKTERVRIFTEFVSRRLAAYAPLLAGLSISRD 298


>ref|YP_004140407.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gb|ADV10357.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/298 (90%), Positives = 282/298 (94%)

Query: 6   MIDWDDVRYFLAVARGGSVRAAAERLGVNHSTVLRRVAQLEERLGAQMFERLPSGYRLTA 65
           MIDWDDVRYFLAVARGGSVRAA  +LGVNHSTVLRR+AQLEERLGAQMFE+LPSGYRLTA
Sbjct: 1   MIDWDDVRYFLAVARGGSVRAAGAQLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTA 60

Query: 66  AGEEVLELAEQMEASSHQLETRVFGRDQGVRGRLRVTLAPPLATHLLMPDFADFARLHPD 125
           AGEEVLELA QMEASSHQLETRVFGRDQ VRG LRVTLAPPLATHLLMPDFADFA LHPD
Sbjct: 61  AGEEVLELANQMEASSHQLETRVFGRDQSVRGLLRVTLAPPLATHLLMPDFADFAHLHPD 120

Query: 126 IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGPELFGGIYISRDRLAAWRA 185
           IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKG E+FGG+Y+SRDRLAAWRA
Sbjct: 121 IEMEILSSGELANLTNREADVAIRVVYDRKTLPLNLHGLKGAEVFGGVYMSRDRLAAWRA 180

Query: 186 GAPDPVRWIVISIHGIPDWAHEGEVRTAEVPFRATDAEAQIVAVRQGLGMTTLPCFVGDA 245
           GAPDP+RWIVIS+HGIP+WA  GEV T  VPFR TDAEAQIVAVRQGLG+TTLPCFVGDA
Sbjct: 181 GAPDPIRWIVISVHGIPEWASAGEVGTTGVPFRITDAEAQIVAVRQGLGITTLPCFVGDA 240

Query: 246 DPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRLFTKFVSRRLTAYAPLLAGLSVSRD 303
           DPLLVRVPGTDLH+YGTLWLLT GETRKTKRVRLFT+FVSRRL AYAPLLAGLS SRD
Sbjct: 241 DPLLVRVPGTDLHLYGTLWLLTHGETRKTKRVRLFTEFVSRRLAAYAPLLAGLSTSRD 298